Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003098

Physical Location & Seq

Genomic Coordinates Forward (+)

3745774 .. 3748557

Gene Structure 2784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G11180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGGTGGTCGTTACGATCGGAACACATTCGACGAACAAGACGAAGTCAATCCTTTTGCTAATCCTGGGAGTGTTCCTGCTGCTTCGAATTCCAGACTATCGCCTTTGCCTCCCGAACCTGCTGGTTTTGGTTATGGTCGTACTGTTGACATTCCTCTTGACAGACCAGGGTCTGGTGCACAGGATTTGAAAAAGAAAGAGAAGGAGCTCCAAGCCAAAGAAGCTGACCTAAGACGACGAGAGCAAGATCTTAAACGAAAACAGGATGCTGCTGCCCGAGCCGGAATTGTTATCGAGGCAAAAAACTGGCCTACCTTCTTCCCCCTTATCCACCATGACATTGCAAATGAAATTCTGGTTCGTCTCCAAAGGCTACAGTATATTGCATTTGCAACATATTTGGGGTTGGTTCTCGCACTTTTCTGGAATATCATCGCCGTTACTACCGCTTGGATCAAAGGAGAAGGAGTAACAATTTGGCTTCTCGCCGTTATTTACTTCATATCGGGTGTTCCAGGAGGCTATGTGTTATGGTATCGGCCTCTCTACCGTGCCTTCAGAAGTGATAGTGCATTCAACTTTGGATGGTTTTTCTTGTTCTACATGCTCCACATACTTTTCTGCCTCTTTGCTGCAGTTGCTCCTCCTATTGTCTTCAAAGGAAAATCACTTGCGGGCATATTACCTGCAATAGATGTGTTGAGCGCTCAGGCATTGGTCGGGATCTTCTACTTCATTGGGTTTGGGTTATTCTGTCTTGAATCAGTGGTTAGCATCTGGGTTATACAGCAAGTATACATGTACTTCAGAGGAAGCGGAAAAGCGGATGATATGAGACGGGATGCTGCAAGAGGAGCCATGAGAGCTGCCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0097708 GO:0098657 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

291

Amino Acids

32.63

Weight (kDa)

9.26

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCAMP	PF04144	101 - 271	5.5e-55	SCAMP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11180 AT1G11180 AT1G11180 AT1G61250 AT1G61250 AT2G20840 AT2G20840 AT2G20840
fragaria_vesca	FvH4_3g04440
malus_domestica	MD05G1323100.v1.1 MD10G1300900.v1.1
prunus_persica	Prupe.4G039500_v2.0.a1 Prupe.4G039500_v2.0.a1
pyrus_communis	pycom05g29740 pycom10g25380
rosa_chinensis	RchiOBHm_Chr5g0006841 RchiOBHm_Chr5g0006891 RchiOBHm_Chr5g0007151 RchiOBHm_Chr5g0007321
rosa_laevigata	RLG00000031433 RLG00000031444
rosa_multiflora	Rmu_sc0001044.1_g000035 Rmu_sc0001838.1_g000001 Rmu_sc0003826.1_g000003
rosa_roxburghii	Rroxscaffold_1G00069210
rosa_rugosa	Rorug04G0424900
rosa_samantha	Rh5AG052600 Rh5AG053300 Rh5BG051500 Rh5BG052300 Rh5CG060200 Rh5CG060900 Rh5CG062300 Rh5DG050800
rosa_wichuraiana	Rw5G005140 Rw5G005200 Rw5G005510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	127, 694
AccB7I	CCANNNNNTGG	1 cut(s)	173
AccI	GTMKAC	1 cut(s)	795
AciI	CCGC	4 cut(s)	447, 674, 816, 824
AclWI	GGATC	2 cut(s)	461, 731
AcsI	RAATTY	2 cut(s)	88, 351
AcuI	CTGAAG	2 cut(s)	541, 790
AfaI	GTAC	2 cut(s)	142, 803
AfeI	AGCGCT	1 cut(s)	706
AfiI	CCNNNNNNNGG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	798
AgsI	TTSAA	4 cut(s)	190, 577, 658, 761
AjnI	CCWGG	3 cut(s)	64, 166, 514
AluBI	AGCT	3 cut(s)	208, 224, 866
AluI	AGCT	3 cut(s)	208, 224, 866
Alw21I	GWGCWC	2 cut(s)	181, 210
Alw26I	GTCTC	2 cut(s)	368, 829
Alw44I	GTGCAC	1 cut(s)	177
AlwI	GGATC	2 cut(s)	461, 731
AlwNI	CAGNNNCTG	1 cut(s)	173
Ama87I	CYCGRG	1 cut(s)	276
Aor51HI	AGCGCT	1 cut(s)	706
AoxI	GGCC	2 cut(s)	308, 539
ApaLI	GTGCAC	1 cut(s)	177
ApeKI	GCWGC	6 cut(s)	80, 269, 272, 632, 845, 866
ApoI	RAATTY	2 cut(s)	88, 351
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	1 cut(s)	707
AsuII	TTCGAA	1 cut(s)	86
AvaI	CYCGRG	1 cut(s)	276
BaeGI	GKGCMC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	210
BbsI	GAAGAC	1 cut(s)	646
Bbv12I	GWGCWC	2 cut(s)	181, 210
BbvI	GCAGC	6 cut(s)	67, 256, 259, 619, 832, 853
BccI	CCATC	1 cut(s)	579
BceAI	ACGGC	2 cut(s)	422, 473
BciT130I	CCWGG	3 cut(s)	66, 168, 516
BcoDI	GTCTC	2 cut(s)	368, 829
BfmI	CTRYAG	2 cut(s)	374, 633
BfoI	RGCGCY	1 cut(s)	708
BfuAI	ACCTGC	2 cut(s)	127, 694
BglII	AGATCT	1 cut(s)	247
BisI	GCNGC	6 cut(s)	81, 270, 273, 633, 846, 867
BlsI	GCNGC	6 cut(s)	82, 271, 274, 634, 847, 868
Bme1390I	CCNGG	3 cut(s)	66, 168, 516
BmeT110I	CYCGRG	1 cut(s)	276
BmiI	GGNNCC	1 cut(s)	856
BmrFI	CCNGG	3 cut(s)	66, 168, 516
BmsI	GCATC	3 cut(s)	256, 783, 832
BoxI	GACNNNNGTC	1 cut(s)	169
BpiI	GAAGAC	1 cut(s)	646
Bpu10I	CCTNAGC	1 cut(s)	708
Bpu14I	TTCGAA	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	65, 167
BsaXI	ACNNNNNCTCC	4 cut(s)	453, 483, 510, 540
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse1I	ACTGG	1 cut(s)	311
Bse3DI	GCAATG	1 cut(s)	339
BseBI	CCWGG	3 cut(s)	66, 168, 516
BseDI	CCNNGG	2 cut(s)	65, 167
BseGI	GGATG	4 cut(s)	271, 590, 832, 847
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	1 cut(s)	722
BseNI	ACTGG	1 cut(s)	311
BseRI	GAGGAG	2 cut(s)	633, 867
BseSI	GKGCMC	1 cut(s)	181
BseXI	GCAGC	6 cut(s)	67, 256, 259, 619, 832, 853
Bsh1285I	CGRYCG	1 cut(s)	19
BshFI	GGCC	2 cut(s)	310, 541
BsiEI	CGRYCG	1 cut(s)	19
BsiHKAI	GWGCWC	2 cut(s)	181, 210
BsiHKCI	CYCGRG	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	282
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmAI	GTCTC	2 cut(s)	368, 829
BsmBI	CGTCTC	2 cut(s)	368, 829
BsmI	GAATGC	1 cut(s)	572
BsnI	GGCC	2 cut(s)	310, 541
BsoBI	CYCGRG	1 cut(s)	276
Bsp119I	TTCGAA	1 cut(s)	86
Bsp1286I	GDGCHC	2 cut(s)	181, 210
Bsp143I	GATC	4 cut(s)	16, 247, 453, 723
BspACI	CCGC	4 cut(s)	447, 674, 816, 824
BspANI	GGCC	2 cut(s)	310, 541
BspCNI	CTCAG	1 cut(s)	721
BspLI	GGNNCC	1 cut(s)	856
BspMAI	CTGCAG	1 cut(s)	637
BspMI	ACCTGC	2 cut(s)	127, 694
BspPI	GGATC	2 cut(s)	461, 731
BspT104I	TTCGAA	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	339
BsrI	ACTGG	1 cut(s)	311
BssECI	CCNNGG	2 cut(s)	65, 167
BssMI	GATC	4 cut(s)	16, 247, 453, 723
BssNAI	GTATAC	1 cut(s)	796
Bst1107I	GTATAC	1 cut(s)	796
Bst2UI	CCWGG	3 cut(s)	66, 168, 516
Bst4CI	ACNGT	3 cut(s)	145, 378, 551
BstBI	TTCGAA	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	676
BstDEI	CTNAG	2 cut(s)	230, 708
BstF5I	GGATG	4 cut(s)	271, 590, 832, 847
BstH2I	RGCGCY	1 cut(s)	708
BstHHI	GCGC	1 cut(s)	707
BstKTI	GATC	4 cut(s)	19, 250, 456, 726
BstMAI	GTCTC	2 cut(s)	368, 829
BstMBI	GATC	4 cut(s)	16, 247, 453, 723
BstMCI	CGRYCG	1 cut(s)	19
BstMWI	GCNNNNNNNGC	5 cut(s)	221, 278, 638, 854, 863
BstNI	CCWGG	3 cut(s)	66, 168, 516
BstNSI	RCATGY	2 cut(s)	607, 802
BstPAI	GACNNNNGTC	1 cut(s)	169
BstSCI	CCNGG	3 cut(s)	64, 166, 514
BstSFI	CTRYAG	2 cut(s)	374, 633
BstSLI	GKGCMC	1 cut(s)	181
BstV1I	GCAGC	6 cut(s)	67, 256, 259, 619, 832, 853
BstV2I	GAAGAC	1 cut(s)	646
BstX2I	RGATCY	2 cut(s)	247, 723
BstYI	RGATCY	2 cut(s)	247, 723
BstZ17I	GTATAC	1 cut(s)	796
BsuRI	GGCC	2 cut(s)	310, 541
BtgZI	GCGATG	1 cut(s)	418
BtsCI	GGATG	4 cut(s)	271, 590, 832, 847
BtsIMutI	CAGTG	1 cut(s)	771
BveI	ACCTGC	2 cut(s)	127, 694
Cac8I	GCNNGC	1 cut(s)	676
CaiI	CAGNNNCTG	1 cut(s)	173
CfoI	GCGC	1 cut(s)	707
Csp6I	GTAC	2 cut(s)	141, 802
CviAII	CATG	4 cut(s)	335, 604, 799, 859
CviQI	GTAC	2 cut(s)	141, 802
DdeI	CTNAG	2 cut(s)	230, 708
DpnI	GATC	4 cut(s)	18, 249, 455, 725
DpnII	GATC	4 cut(s)	16, 247, 453, 723
Ecl136II	GAGCTC	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	210
Eco47III	AGCGCT	1 cut(s)	706
Eco53kI	GAGCTC	1 cut(s)	208
Eco57I	CTGAAG	2 cut(s)	541, 790
Eco88I	CYCGRG	1 cut(s)	276
EcoICRI	GAGCTC	1 cut(s)	208
EcoRI	GAATTC	1 cut(s)	88
EcoRII	CCWGG	3 cut(s)	64, 166, 514
EcoT38I	GRGCYC	1 cut(s)	210
Esp3I	CGTCTC	2 cut(s)	368, 829
FaeI	CATG	4 cut(s)	338, 607, 802, 862
FatI	CATG	4 cut(s)	334, 603, 798, 858
FauI	CCCGC	1 cut(s)	667
FauNDI	CATATG	1 cut(s)	872
FblI	GTMKAC	1 cut(s)	795
Fnu4HI	GCNGC	6 cut(s)	81, 270, 273, 633, 846, 867
FokI	GGATG	4 cut(s)	278, 597, 839, 854
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	6 cut(s)	81, 270, 273, 633, 846, 867
GlaI	GCGC	1 cut(s)	706
GluI	GCNGC	6 cut(s)	81, 270, 273, 633, 846, 867
HaeII	RGCGCY	1 cut(s)	708
HaeIII	GGCC	2 cut(s)	310, 541
HapII	CCGG	1 cut(s)	282
HhaI	GCGC	1 cut(s)	707
Hin1II	CATG	4 cut(s)	338, 607, 802, 862
Hin6I	GCGC	1 cut(s)	705
HinP1I	GCGC	1 cut(s)	705
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	1 cut(s)	761
HpaII	CCGG	1 cut(s)	282
Hpy166II	GTNNAC	3 cut(s)	148, 179, 796
Hpy188I	TCNGA	3 cut(s)	21, 560, 809
Hpy188III	TCNNGA	6 cut(s)	93, 113, 158, 424, 721, 758
Hpy8I	GTNNAC	3 cut(s)	148, 179, 796
Hpy99I	CGWCG	2 cut(s)	35, 240
HpyAV	CCTTC	4 cut(s)	196, 325, 458, 565
HpyCH4III	ACNGT	3 cut(s)	145, 378, 551
HpyCH4V	TGCA	8 cut(s)	179, 344, 386, 392, 572, 635, 689, 848
HpyF10VI	GCNNNNNNNGC	5 cut(s)	221, 278, 638, 854, 863
HpyF3I	CTNAG	2 cut(s)	230, 708
Hsp92II	CATG	4 cut(s)	338, 607, 802, 862
HspAI	GCGC	1 cut(s)	705
Kzo9I	GATC	4 cut(s)	16, 247, 453, 723
LmnI	GCTCC	5 cut(s)	205, 213, 612, 646, 854
Lsp1109I	GCAGC	6 cut(s)	67, 256, 259, 619, 832, 853
LweI	GCATC	3 cut(s)	256, 783, 832
MaeIII	GTNAC	3 cut(s)	11, 439, 469
MalI	GATC	4 cut(s)	18, 249, 455, 725
MboI	GATC	4 cut(s)	16, 247, 453, 723
MboII	GAAGA	3 cut(s)	310, 646, 718
MflI	RGATCY	2 cut(s)	247, 723
MhlI	GDGCHC	2 cut(s)	181, 210
MluCI	AATT	4 cut(s)	88, 285, 351, 474
MnlI	CCTC	9 cut(s)	120, 165, 289, 512, 552, 635, 654, 803, 845
MroXI	GAANNNNTTC	1 cut(s)	26
MseI	TTAA	1 cut(s)	252
MspI	CCGG	1 cut(s)	282
MspR9I	CCNGG	3 cut(s)	66, 168, 516
Mva1269I	GAATGC	1 cut(s)	572
MvaI	CCWGG	3 cut(s)	66, 168, 516
MwoI	GCNNNNNNNGC	5 cut(s)	221, 278, 638, 854, 863
NdeI	CATATG	1 cut(s)	872
NdeII	GATC	4 cut(s)	16, 247, 453, 723
NlaIII	CATG	4 cut(s)	338, 607, 802, 862
NlaIV	GGNNCC	1 cut(s)	856
NspI	RCATGY	2 cut(s)	607, 802
NspV	TTCGAA	1 cut(s)	86
PciI	ACATGT	1 cut(s)	798
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PctI	GAATGC	1 cut(s)	572
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	761
PflFI	GACNNNGTC	1 cut(s)	44
PflMI	CCANNNNNTGG	1 cut(s)	173
PfoI	TCCNGGA	1 cut(s)	514
PkrI	GCNGC	6 cut(s)	82, 271, 274, 634, 847, 868
Ple19I	CGATCG	1 cut(s)	19
PscI	ACATGT	1 cut(s)	798
PshAI	GACNNNNGTC	1 cut(s)	169
Psp124BI	GAGCTC	1 cut(s)	210
Psp6I	CCWGG	3 cut(s)	64, 166, 514
PspGI	CCWGG	3 cut(s)	64, 166, 514
PspN4I	GGNNCC	1 cut(s)	856
PstI	CTGCAG	1 cut(s)	637
PstNI	CAGNNNCTG	1 cut(s)	173
PsuI	RGATCY	2 cut(s)	247, 723
PsyI	GACNNNGTC	1 cut(s)	44
PvuI	CGATCG	1 cut(s)	19
RsaI	GTAC	2 cut(s)	142, 803
RsaNI	GTAC	2 cut(s)	141, 802
SacI	GAGCTC	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	6 cut(s)	81, 270, 273, 633, 846, 867
Sau3AI	GATC	4 cut(s)	16, 247, 453, 723
ScrFI	CCNGG	3 cut(s)	66, 168, 516
SduI	GDGCHC	2 cut(s)	181, 210
SetI	ASST	7 cut(s)	121, 210, 226, 231, 317, 688, 868
SfaNI	GCATC	3 cut(s)	256, 783, 832
SfcI	CTRYAG	2 cut(s)	374, 633
SfuI	TTCGAA	1 cut(s)	86
Sse9I	AATT	4 cut(s)	88, 285, 351, 474
SsiI	CCGC	4 cut(s)	447, 674, 816, 824
SstI	GAGCTC	1 cut(s)	210
StyD4I	CCNGG	3 cut(s)	64, 166, 514
TaaI	ACNGT	3 cut(s)	145, 378, 551
TaqI	TCGA	3 cut(s)	30, 86, 294
TasI	AATT	4 cut(s)	88, 285, 351, 474
TatI	WGTACW	1 cut(s)	801
TfiI	GAWTC	1 cut(s)	761
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	1 cut(s)	771
TseI	GCWGC	6 cut(s)	80, 269, 272, 632, 845, 866
TspDTI	ATGAA	3 cut(s)	363, 490, 724
TspRI	CASTG	1 cut(s)	771
Tth111I	GACNNNGTC	1 cut(s)	44
Van91I	CCANNNNNTGG	1 cut(s)	173
VneI	GTGCAC	1 cut(s)	177
XapI	RAATTY	2 cut(s)	88, 351
XceI	RCATGY	2 cut(s)	607, 802
XmiI	GTMKAC	1 cut(s)	795
XmnI	GAANNNNTTC	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.