Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003098

Physical Location & Seq

Genomic Coordinates Forward (+)

30124039 .. 30128154

Gene Structure 4116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g29740.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCTGGCCGCTACGACAGTAACCCTTTTGCCGAAGAAGACGAAGTCAATCCCTTCTCGAATCCCGGAAGTGTTGCTCCTGCCAAAAACTCAAGACTTTCACCTCTTCCTCCTGAACGTGCTGGTTTCAACTACGGCCTTGGTGAAACCGTTGATATACCTATCGATGGAAATGCAGATTTGAAAAAGAGGGAGAGGGAACTCCAAGCTAAAGAAGCTGACTTGAGAAAGCGGGAGGAGATTGTAAAACGGAAAGAAGCAGCTGCCGCACGTGCTGGAATTGTTCTGGAGGATAAAAATTGGCCACCTTTCTTCCCAATTATCCATCATGATATTGCAAATGAAATACCAATTCATTTGCAGAGGCTGCAGTATGTTGCATTCACAACATGGTTAGGAATTGTTCTTTGCCTTTTCTGGAATATAATAGCCGTTACTACAGCATGGATTAAGGGGGATGGGGTAAAAATTTGGTTCCTTGCTATTATCTACTTCATAGCAGGGGCTCCTGGATCATATGTCCTGTGGTACCGTCCACTGTACCGAACTTTCAGGTCTGAGAGTGCTTTGAAGTATGGATGGTTTTTCATGTTTTATATGCTCCACATTGGGTTCTGCATCTTTGCTGCGGTGGCTCCTCCGATATTCTTCAAAGGGAAATCTCTCACTGGCATTCTGGCTGCAATTGATGTTCTGAGCGAACATGCTTTGGTTGGGATCTTTTACTTCATCGGATTTGGAATGTTCTGTCTAGAAGCAGTGCTTAGCGTCTGGGTTATTCAGCAAGTATACATGTACTTCCGAGGAAGCGGCAAAGCTGCTGAAATGAGGCGTGAAGGAGCGAGAGGAGTCATGAGGGCAGCACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0097708 GO:0098657 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

290

Amino Acids

32.66

Weight (kDa)

8.86

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11180 AT1G11180 AT1G11180 AT1G61250 AT1G61250 AT2G20840 AT2G20840 AT2G20840
fragaria_vesca	FvH4_3g04440
malus_domestica	MD05G1323100.v1.1 MD10G1300900.v1.1
prunus_persica	Prupe.4G039500_v2.0.a1 Prupe.4G039500_v2.0.a1
pyrus_communis	pycom05g29740 pycom10g25380
rosa_chinensis	RchiOBHm_Chr5g0006841 RchiOBHm_Chr5g0006891 RchiOBHm_Chr5g0007151 RchiOBHm_Chr5g0007321
rosa_laevigata	RLG00000031433 RLG00000031444
rosa_multiflora	Rmu_sc0001044.1_g000035 Rmu_sc0001838.1_g000001 Rmu_sc0003826.1_g000003
rosa_roxburghii	Rroxscaffold_1G00069210
rosa_rugosa	Rorug04G0424900
rosa_samantha	Rh5AG052600 Rh5AG053300 Rh5BG051500 Rh5BG052300 Rh5CG060200 Rh5CG060900 Rh5CG062300 Rh5DG050800
rosa_wichuraiana	Rw5G005140 Rw5G005200 Rw5G005510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	528
AccB1I	GGYRCC	1 cut(s)	528
AccI	GTMKAC	1 cut(s)	789
AciI	CCGC	5 cut(s)	10, 232, 267, 629, 810
AclWI	GGATC	2 cut(s)	520, 725
AcoI	YGGCCR	2 cut(s)	7, 302
AcsI	RAATTY	1 cut(s)	468
AcvI	CACGTG	1 cut(s)	272
AfaI	GTAC	3 cut(s)	530, 542, 797
AfiI	CCNNNNNNNGG	1 cut(s)	167
AflIII	ACRYGT	1 cut(s)	792
AgsI	TTSAA	4 cut(s)	130, 184, 571, 652
AjnI	CCWGG	1 cut(s)	508
AluBI	AGCT	4 cut(s)	209, 218, 263, 818
AluI	AGCT	4 cut(s)	209, 218, 263, 818
AlwI	GGATC	2 cut(s)	520, 725
AlwNI	CAGNNNCTG	1 cut(s)	367
AoxI	GGCC	3 cut(s)	7, 136, 302
ApeKI	GCWGC	7 cut(s)	260, 263, 367, 626, 680, 818, 860
ApoI	RAATTY	1 cut(s)	468
Asp718I	GGTACC	1 cut(s)	528
AsuC2I	CCSGG	1 cut(s)	66
AsuHPI	GGTGA	2 cut(s)	93, 155
BalI	TGGCCA	1 cut(s)	304
BanI	GGYRCC	1 cut(s)	528
BanII	GRGCYC	1 cut(s)	508
BbrPI	CACGTG	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	45
BbvI	GCAGC	6 cut(s)	250, 272, 354, 613, 667, 805
BccI	CCATC	4 cut(s)	161, 333, 452, 573
BceAI	ACGGC	2 cut(s)	151, 416
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BciT130I	CCWGG	1 cut(s)	510
BcnI	CCSGG	1 cut(s)	66
BfaI	CTAG	1 cut(s)	752
BfmI	CTRYAG	2 cut(s)	368, 438
BlpI	GCTNAGC	1 cut(s)	764
Bme1390I	CCNGG	2 cut(s)	66, 510
BmiI	GGNNCC	4 cut(s)	476, 507, 530, 636
BmrFI	CCNGG	2 cut(s)	66, 510
BmsI	GCATC	1 cut(s)	627
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	308
Bpu1102I	GCTNAGC	1 cut(s)	764
BpuEI	CTTGAG	2 cut(s)	76, 244
BpuMI	CCSGG	1 cut(s)	66
Bsa29I	ATCGAT	1 cut(s)	165
BsaAI	YACGTR	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	139, 802
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	673
BseBI	CCWGG	1 cut(s)	510
BseCI	ATCGAT	1 cut(s)	165
BseDI	CCNNGG	2 cut(s)	139, 802
BseGI	GGATG	2 cut(s)	463, 584
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMII	CTCAG	2 cut(s)	549, 686
BseNI	ACTGG	1 cut(s)	673
BseRI	GAGGAG	3 cut(s)	251, 627, 861
BseXI	GCAGC	6 cut(s)	250, 272, 354, 613, 667, 805
BshFI	GGCC	3 cut(s)	9, 138, 304
BshNI	GGYRCC	1 cut(s)	528
BshVI	ATCGAT	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmI	GAATGC	2 cut(s)	380, 672
BsnI	GGCC	3 cut(s)	9, 138, 304
Bsp1286I	GDGCHC	1 cut(s)	508
Bsp143I	GATC	2 cut(s)	512, 717
Bsp1720I	GCTNAGC	1 cut(s)	764
BspACI	CCGC	5 cut(s)	10, 232, 267, 629, 810
BspANI	GGCC	3 cut(s)	9, 138, 304
BspCNI	CTCAG	2 cut(s)	550, 687
BspDI	ATCGAT	1 cut(s)	165
BspHI	TCATGA	2 cut(s)	328, 852
BspLI	GGNNCC	4 cut(s)	476, 507, 530, 636
BspMAI	CTGCAG	1 cut(s)	372
BspPI	GGATC	2 cut(s)	520, 725
BspT107I	GGYRCC	1 cut(s)	528
BsrI	ACTGG	1 cut(s)	673
BssECI	CCNNGG	2 cut(s)	139, 802
BssMI	GATC	2 cut(s)	512, 717
BssNAI	GTATAC	1 cut(s)	790
BssT1I	CCWWGG	1 cut(s)	139
Bst1107I	GTATAC	1 cut(s)	790
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	4 cut(s)	20, 151, 533, 540
Bst6I	CTCTTC	1 cut(s)	111
BstAPI	GCANNNNNTGC	1 cut(s)	367
BstBAI	YACGTR	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	3 cut(s)	558, 695, 764
BstF5I	GGATG	2 cut(s)	463, 584
BstKTI	GATC	2 cut(s)	515, 720
BstMBI	GATC	2 cut(s)	512, 717
BstMWI	GCNNNNNNNGC	5 cut(s)	215, 266, 272, 367, 632
BstNI	CCWGG	1 cut(s)	510
BstNSI	RCATGY	2 cut(s)	707, 796
BstSCI	CCNGG	2 cut(s)	64, 508
BstSFI	CTRYAG	2 cut(s)	368, 438
BstV1I	GCAGC	6 cut(s)	250, 272, 354, 613, 667, 805
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	717
BstYI	RGATCY	1 cut(s)	717
BstZ17I	GTATAC	1 cut(s)	790
Bsu15I	ATCGAT	1 cut(s)	165
BsuRI	GGCC	3 cut(s)	9, 138, 304
BsuTUI	ATCGAT	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	463, 584
BtsI	GCAGTG	1 cut(s)	765
BtsIMutI	CAGTG	3 cut(s)	536, 666, 765
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	367
CciI	TCATGA	2 cut(s)	328, 852
ClaI	ATCGAT	1 cut(s)	165
CseI	GACGC	1 cut(s)	757
Csp6I	GTAC	3 cut(s)	529, 541, 796
CviAII	CATG	7 cut(s)	329, 390, 444, 589, 704, 793, 853
CviQI	GTAC	3 cut(s)	529, 541, 796
DdeI	CTNAG	3 cut(s)	558, 695, 764
DpnI	GATC	2 cut(s)	514, 719
DpnII	GATC	2 cut(s)	512, 717
EaeI	YGGCCR	2 cut(s)	7, 302
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco130I	CCWWGG	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	508
Eco72I	CACGTG	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	139
EcoT38I	GRGCYC	1 cut(s)	508
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	7 cut(s)	332, 393, 447, 592, 707, 796, 856
FalI	AAGNNNNNCTT	2 cut(s)	747, 779
FatI	CATG	7 cut(s)	328, 389, 443, 588, 703, 792, 852
FauI	CCCGC	1 cut(s)	225
FauNDI	CATATG	1 cut(s)	517
FblI	GTMKAC	1 cut(s)	789
FokI	GGATG	2 cut(s)	470, 591
FriOI	GRGCYC	1 cut(s)	508
FspBI	CTAG	1 cut(s)	752
GsuI	CTGGAG	1 cut(s)	308
HaeIII	GGCC	3 cut(s)	9, 138, 304
HapII	CCGG	1 cut(s)	66
HgaI	GACGC	1 cut(s)	757
Hin1II	CATG	7 cut(s)	332, 393, 447, 592, 707, 796, 856
HinfI	GANTC	2 cut(s)	61, 849
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	2 cut(s)	93, 155
Hpy166II	GTNNAC	2 cut(s)	536, 790
Hpy188I	TCNGA	6 cut(s)	559, 642, 696, 734, 803, 869
Hpy188III	TCNNGA	8 cut(s)	58, 93, 113, 287, 329, 418, 752, 853
Hpy8I	GTNNAC	2 cut(s)	536, 790
HpyAV	CCTTC	2 cut(s)	64, 830
HpyCH4III	ACNGT	4 cut(s)	20, 151, 533, 540
HpyCH4IV	ACGT	2 cut(s)	118, 271
HpyCH4V	TGCA	7 cut(s)	176, 338, 361, 370, 380, 618, 683
HpyF10VI	GCNNNNNNNGC	5 cut(s)	215, 266, 272, 367, 632
HpyF3I	CTNAG	3 cut(s)	558, 695, 764
HpySE526I	ACGT	2 cut(s)	118, 271
Hsp92II	CATG	7 cut(s)	332, 393, 447, 592, 707, 796, 856
KpnI	GGTACC	1 cut(s)	532
Kzo9I	GATC	2 cut(s)	512, 717
LmnI	GCTCC	5 cut(s)	82, 511, 606, 640, 839
Lsp1109I	GCAGC	6 cut(s)	250, 272, 354, 613, 667, 805
LweI	GCATC	1 cut(s)	627
MaeI	CTAG	1 cut(s)	752
MaeII	ACGT	2 cut(s)	118, 271
MaeIII	GTNAC	2 cut(s)	20, 433
MalI	GATC	2 cut(s)	514, 719
MboI	GATC	2 cut(s)	512, 717
MboII	GAAGA	5 cut(s)	47, 50, 98, 304, 640
MfeI	CAATTG	1 cut(s)	684
MflI	RGATCY	1 cut(s)	717
MhlI	GDGCHC	1 cut(s)	508
MlsI	TGGCCA	1 cut(s)	304
MluCI	AATT	7 cut(s)	279, 298, 318, 351, 399, 468, 684
MluNI	TGGCCA	1 cut(s)	304
MlyI	GAGTC	1 cut(s)	858
Mox20I	TGGCCA	1 cut(s)	304
MscI	TGGCCA	1 cut(s)	304
MseI	TTAA	1 cut(s)	450
Msp20I	TGGCCA	1 cut(s)	304
MspA1I	CMGCKG	1 cut(s)	263
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	2 cut(s)	66, 510
MunI	CAATTG	1 cut(s)	684
Mva1269I	GAATGC	2 cut(s)	380, 672
MvaI	CCWGG	1 cut(s)	510
MwoI	GCNNNNNNNGC	5 cut(s)	215, 266, 272, 367, 632
NciI	CCSGG	1 cut(s)	66
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	2 cut(s)	512, 717
NlaIII	CATG	7 cut(s)	332, 393, 447, 592, 707, 796, 856
NlaIV	GGNNCC	4 cut(s)	476, 507, 530, 636
NspI	RCATGY	2 cut(s)	707, 796
PagI	TCATGA	2 cut(s)	328, 852
PciI	ACATGT	1 cut(s)	792
PctI	GAATGC	2 cut(s)	380, 672
PfeI	GAWTC	1 cut(s)	61
PflFI	GACNNNGTC	1 cut(s)	44
PfoI	TCCNGGA	2 cut(s)	64, 508
PleI	GAGTC	1 cut(s)	857
PmaCI	CACGTG	1 cut(s)	272
PmlI	CACGTG	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	857
Ppu21I	YACGTR	1 cut(s)	272
PscI	ACATGT	1 cut(s)	792
Psp6I	CCWGG	1 cut(s)	508
PspCI	CACGTG	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	4 cut(s)	476, 507, 530, 636
PstI	CTGCAG	1 cut(s)	372
PstNI	CAGNNNCTG	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	717
PsyI	GACNNNGTC	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	3 cut(s)	530, 542, 797
RsaNI	GTAC	3 cut(s)	529, 541, 796
SaqAI	TTAA	1 cut(s)	450
Sau3AI	GATC	2 cut(s)	512, 717
SchI	GAGTC	1 cut(s)	858
ScrFI	CCNGG	2 cut(s)	66, 510
SduI	GDGCHC	1 cut(s)	508
SfaNI	GCATC	1 cut(s)	627
SfcI	CTRYAG	2 cut(s)	368, 438
SmlI	CTYRAG	2 cut(s)	91, 223
SmoI	CTYRAG	2 cut(s)	91, 223
Sse9I	AATT	7 cut(s)	279, 298, 318, 351, 399, 468, 684
SsiI	CCGC	5 cut(s)	10, 232, 267, 629, 810
SspMI	CTAG	1 cut(s)	752
StyD4I	CCNGG	2 cut(s)	64, 508
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	4 cut(s)	20, 151, 533, 540
TaiI	ACGT	2 cut(s)	121, 274
TaqI	TCGA	2 cut(s)	59, 165
TasI	AATT	7 cut(s)	279, 298, 318, 351, 399, 468, 684
TatI	WGTACW	1 cut(s)	795
TauI	GCSGC	3 cut(s)	12, 269, 813
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TscAI	CASTG	3 cut(s)	543, 673, 765
TseI	GCWGC	7 cut(s)	260, 263, 367, 626, 680, 818, 860
TspDTI	ATGAA	5 cut(s)	344, 357, 484, 577, 718
TspGWI	ACGGA	1 cut(s)	265
TspRI	CASTG	3 cut(s)	543, 673, 765
Tth111I	GACNNNGTC	1 cut(s)	44
XapI	RAATTY	1 cut(s)	468
XbaI	TCTAGA	1 cut(s)	751
XceI	RCATGY	2 cut(s)	707, 796
XmiI	GTMKAC	1 cut(s)	789
XspI	CTAG	1 cut(s)	752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.