Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003098

Physical Location & Seq

Genomic Coordinates Forward (+)

45035003 .. 45039735

Gene Structure 4733 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1323100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCTGGCCGCTACGACAGTAACCCATTTGCCGAAGAAGACGAAGTCAATCCCTTCTCGAATCCTGGAAGCGTTGCTCCTGCCAAAAACTCAAGACTTTCACCTCTTCCTCCTGAACGTGCTGGTTTCAACTACGGCCTTGGTGACACTGTTGATATACCTATTGACGGAAATGCAGATTTGAAAAAGAGGGAGAGGGAACTCCAAGCTAAAGAAGCTGAATTGAGAAAGCGGGAGGAGATTGTAAAACGGAAAGAAGCTGCCGCCGCACGTGCTGGAATTGTTCTGGAGGATAAAAATTGGCCACCTTTCTTCCCAATTATCCATCATGATATTGCAAATGAAATACCAATTCATTTACAGAGGCTGCAGTATGTTGCATTCACAACATGGTTAGGAATTATTCTTTGCCTTTTCTGGAATATAATAGCCGTTACTACAGCATGGATTAAGGGGGATGGGGTAAAAATTTGGTTCCTTGCTATTATCTACTTCATAGCAGGGGCTCCTGGATCCTATGTCCTGTGGTACCGTCCACTGTACCGAACTTTCAGAATGTCTGAGAGTGCTTTGAAGTATGGATGGTTTTTCATGTTTTATATGCTCCACATTGGCTTCTGCATCTTTGCTGCGGTGGCTCCTCCGATATTCTTCAATGGGAAATCTCTCACTGGCATTCTGGCTGCAATTGATGTTTTGAGCGACCATGCTTTGGTTGGGATCTTTTACTTCATCGGATTTGGAATGTTCTGTCTAGAAGCAGTGCTTAGCGTCTGGGTTATTCAGCAAGTATACATGTACTTCCGAGGAAGCGGTAAAGCTGCTGAAATGAGGCGCGAAGGAGCAAGAGGAGTCGTGAGGGCAGCACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0097708 GO:0098657 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

291

Amino Acids

32.74

Weight (kDa)

8.66

Isoelectric Point (pI)

43.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCAMP	PF04144	99 - 270	2e-58	SCAMP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11180 AT1G11180 AT1G11180 AT1G61250 AT1G61250 AT2G20840 AT2G20840 AT2G20840
fragaria_vesca	FvH4_3g04440
malus_domestica	MD05G1323100.v1.1 MD10G1300900.v1.1
prunus_persica	Prupe.4G039500_v2.0.a1 Prupe.4G039500_v2.0.a1
pyrus_communis	pycom05g29740 pycom10g25380
rosa_chinensis	RchiOBHm_Chr5g0006841 RchiOBHm_Chr5g0006891 RchiOBHm_Chr5g0007151 RchiOBHm_Chr5g0007321
rosa_laevigata	RLG00000031433 RLG00000031444
rosa_multiflora	Rmu_sc0001044.1_g000035 Rmu_sc0001838.1_g000001 Rmu_sc0003826.1_g000003
rosa_roxburghii	Rroxscaffold_1G00069210
rosa_rugosa	Rorug04G0424900
rosa_samantha	Rh5AG052600 Rh5AG053300 Rh5BG051500 Rh5BG052300 Rh5CG060200 Rh5CG060900 Rh5CG062300 Rh5DG050800
rosa_wichuraiana	Rw5G005140 Rw5G005200 Rw5G005510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	528
AccB1I	GGYRCC	1 cut(s)	528
AccB7I	CCANNNNNTGG	1 cut(s)	712
AccI	GTMKAC	1 cut(s)	792
AccII	CGCG	1 cut(s)	837
AciI	CCGC	6 cut(s)	10, 232, 264, 267, 632, 813
AclWI	GGATC	3 cut(s)	507, 520, 728
AcoI	YGGCCR	2 cut(s)	7, 302
AcsI	RAATTY	1 cut(s)	468
AcvI	CACGTG	1 cut(s)	272
AfaI	GTAC	3 cut(s)	530, 542, 800
AfiI	CCNNNNNNNGG	2 cut(s)	167, 712
AflIII	ACRYGT	1 cut(s)	795
AgsI	TTSAA	4 cut(s)	130, 184, 574, 655
AjnI	CCWGG	2 cut(s)	64, 508
AluBI	AGCT	4 cut(s)	209, 218, 260, 821
AluI	AGCT	4 cut(s)	209, 218, 260, 821
AlwI	GGATC	3 cut(s)	507, 520, 728
AlwNI	CAGNNNCTG	1 cut(s)	367
AoxI	GGCC	3 cut(s)	7, 136, 302
ApeKI	GCWGC	6 cut(s)	260, 367, 629, 683, 821, 863
ApoI	RAATTY	1 cut(s)	468
Asp718I	GGTACC	1 cut(s)	528
AspLEI	GCGC	1 cut(s)	837
AsuHPI	GGTGA	2 cut(s)	93, 155
BalI	TGGCCA	1 cut(s)	304
BamHI	GGATCC	1 cut(s)	512
BanI	GGYRCC	1 cut(s)	528
BanII	GRGCYC	1 cut(s)	508
BbrPI	CACGTG	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	45
BbvI	GCAGC	5 cut(s)	247, 354, 616, 670, 808
BccI	CCATC	3 cut(s)	333, 452, 576
BceAI	ACGGC	2 cut(s)	151, 416
BciT130I	CCWGG	2 cut(s)	66, 510
BfaI	CTAG	1 cut(s)	755
BfmI	CTRYAG	2 cut(s)	368, 438
BisI	GCNGC	9 cut(s)	10, 261, 264, 267, 368, 630, 684, 822, 864
BlpI	GCTNAGC	1 cut(s)	767
BlsI	GCNGC	9 cut(s)	11, 262, 265, 268, 369, 631, 685, 823, 865
Bme1390I	CCNGG	2 cut(s)	66, 510
BmiI	GGNNCC	5 cut(s)	476, 507, 514, 530, 639
BmrFI	CCNGG	2 cut(s)	66, 510
BmsI	GCATC	1 cut(s)	630
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	308
Bpu1102I	GCTNAGC	1 cut(s)	767
BpuEI	CTTGAG	1 cut(s)	76
BsaAI	YACGTR	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	139, 805
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 712
Bse1I	ACTGG	1 cut(s)	676
BseBI	CCWGG	2 cut(s)	66, 510
BseDI	CCNNGG	2 cut(s)	139, 805
BseGI	GGATG	2 cut(s)	463, 587
BseLI	CCNNNNNNNGG	2 cut(s)	167, 712
BseMII	CTCAG	1 cut(s)	552
BseNI	ACTGG	1 cut(s)	676
BseRI	GAGGAG	3 cut(s)	251, 630, 864
BseXI	GCAGC	5 cut(s)	247, 354, 616, 670, 808
Bsh1236I	CGCG	1 cut(s)	837
BshFI	GGCC	3 cut(s)	9, 138, 304
BshNI	GGYRCC	1 cut(s)	528
BslI	CCNNNNNNNGG	2 cut(s)	167, 712
BsmI	GAATGC	2 cut(s)	380, 675
BsnI	GGCC	3 cut(s)	9, 138, 304
Bsp1286I	GDGCHC	1 cut(s)	508
Bsp143I	GATC	2 cut(s)	512, 720
Bsp1720I	GCTNAGC	1 cut(s)	767
BspACI	CCGC	6 cut(s)	10, 232, 264, 267, 632, 813
BspANI	GGCC	3 cut(s)	9, 138, 304
BspCNI	CTCAG	1 cut(s)	553
BspFNI	CGCG	1 cut(s)	837
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	5 cut(s)	476, 507, 514, 530, 639
BspMAI	CTGCAG	1 cut(s)	372
BspPI	GGATC	3 cut(s)	507, 520, 728
BspT107I	GGYRCC	1 cut(s)	528
BsrI	ACTGG	1 cut(s)	676
BssECI	CCNNGG	2 cut(s)	139, 805
BssMI	GATC	2 cut(s)	512, 720
BssNAI	GTATAC	1 cut(s)	793
BssT1I	CCWWGG	1 cut(s)	139
Bst1107I	GTATAC	1 cut(s)	793
Bst2UI	CCWGG	2 cut(s)	66, 510
Bst4CI	ACNGT	4 cut(s)	20, 151, 533, 540
Bst6I	CTCTTC	1 cut(s)	111
BstBAI	YACGTR	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	561, 767
BstF5I	GGATG	2 cut(s)	463, 587
BstFNI	CGCG	1 cut(s)	837
BstHHI	GCGC	1 cut(s)	837
BstKTI	GATC	2 cut(s)	515, 723
BstMBI	GATC	2 cut(s)	512, 720
BstMWI	GCNNNNNNNGC	4 cut(s)	215, 266, 272, 635
BstNI	CCWGG	2 cut(s)	66, 510
BstNSI	RCATGY	1 cut(s)	799
BstSCI	CCNGG	2 cut(s)	64, 508
BstSFI	CTRYAG	2 cut(s)	368, 438
BstUI	CGCG	1 cut(s)	837
BstV1I	GCAGC	5 cut(s)	247, 354, 616, 670, 808
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	2 cut(s)	512, 720
BstYI	RGATCY	2 cut(s)	512, 720
BstZ17I	GTATAC	1 cut(s)	793
BsuRI	GGCC	3 cut(s)	9, 138, 304
BtsCI	GGATG	2 cut(s)	463, 587
BtsI	GCAGTG	1 cut(s)	768
BtsIMutI	CAGTG	4 cut(s)	147, 536, 669, 768
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	367
CciI	TCATGA	1 cut(s)	328
CfoI	GCGC	1 cut(s)	837
CseI	GACGC	1 cut(s)	760
Csp6I	GTAC	3 cut(s)	529, 541, 799
CviAII	CATG	6 cut(s)	329, 390, 444, 592, 707, 796
CviQI	GTAC	3 cut(s)	529, 541, 799
DdeI	CTNAG	2 cut(s)	561, 767
DpnI	GATC	2 cut(s)	514, 722
DpnII	GATC	2 cut(s)	512, 720
EaeI	YGGCCR	2 cut(s)	7, 302
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco130I	CCWWGG	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	508
Eco72I	CACGTG	1 cut(s)	272
EcoRII	CCWGG	2 cut(s)	64, 508
EcoT14I	CCWWGG	1 cut(s)	139
EcoT38I	GRGCYC	1 cut(s)	508
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	6 cut(s)	332, 393, 447, 595, 710, 799
FalI	AAGNNNNNCTT	2 cut(s)	750, 782
FatI	CATG	6 cut(s)	328, 389, 443, 591, 706, 795
FauI	CCCGC	1 cut(s)	225
FblI	GTMKAC	1 cut(s)	792
Fnu4HI	GCNGC	9 cut(s)	10, 261, 264, 267, 368, 630, 684, 822, 864
FokI	GGATG	2 cut(s)	470, 594
FriOI	GRGCYC	1 cut(s)	508
Fsp4HI	GCNGC	9 cut(s)	10, 261, 264, 267, 368, 630, 684, 822, 864
FspBI	CTAG	1 cut(s)	755
GlaI	GCGC	1 cut(s)	836
GluI	GCNGC	9 cut(s)	10, 261, 264, 267, 368, 630, 684, 822, 864
GsuI	CTGGAG	1 cut(s)	308
HaeIII	GGCC	3 cut(s)	9, 138, 304
HgaI	GACGC	1 cut(s)	760
HhaI	GCGC	1 cut(s)	837
Hin1II	CATG	6 cut(s)	332, 393, 447, 595, 710, 799
Hin6I	GCGC	1 cut(s)	835
HinP1I	GCGC	1 cut(s)	835
HinfI	GANTC	2 cut(s)	61, 852
HphI	GGTGA	2 cut(s)	93, 155
Hpy166II	GTNNAC	2 cut(s)	536, 793
Hpy188I	TCNGA	6 cut(s)	554, 562, 645, 737, 806, 872
Hpy188III	TCNNGA	8 cut(s)	58, 93, 113, 287, 329, 418, 755, 856
Hpy8I	GTNNAC	2 cut(s)	536, 793
HpyAV	CCTTC	2 cut(s)	64, 833
HpyCH4III	ACNGT	4 cut(s)	20, 151, 533, 540
HpyCH4IV	ACGT	2 cut(s)	118, 271
HpyCH4V	TGCA	6 cut(s)	176, 338, 370, 380, 621, 686
HpyF10VI	GCNNNNNNNGC	4 cut(s)	215, 266, 272, 635
HpyF3I	CTNAG	2 cut(s)	561, 767
HpySE526I	ACGT	2 cut(s)	118, 271
Hsp92II	CATG	6 cut(s)	332, 393, 447, 595, 710, 799
HspAI	GCGC	1 cut(s)	835
KpnI	GGTACC	1 cut(s)	532
Kzo9I	GATC	2 cut(s)	512, 720
LmnI	GCTCC	5 cut(s)	82, 511, 609, 643, 842
Lsp1109I	GCAGC	5 cut(s)	247, 354, 616, 670, 808
LweI	GCATC	1 cut(s)	630
MaeI	CTAG	1 cut(s)	755
MaeII	ACGT	2 cut(s)	118, 271
MaeIII	GTNAC	3 cut(s)	20, 143, 433
MalI	GATC	2 cut(s)	514, 722
MboI	GATC	2 cut(s)	512, 720
MboII	GAAGA	5 cut(s)	47, 50, 98, 304, 643
MfeI	CAATTG	1 cut(s)	687
MflI	RGATCY	2 cut(s)	512, 720
MhlI	GDGCHC	1 cut(s)	508
MlsI	TGGCCA	1 cut(s)	304
MluCI	AATT	8 cut(s)	221, 279, 298, 318, 351, 399, 468, 687
MluNI	TGGCCA	1 cut(s)	304
MlyI	GAGTC	1 cut(s)	861
Mox20I	TGGCCA	1 cut(s)	304
MscI	TGGCCA	1 cut(s)	304
MseI	TTAA	1 cut(s)	450
Msp20I	TGGCCA	1 cut(s)	304
MspR9I	CCNGG	2 cut(s)	66, 510
MunI	CAATTG	1 cut(s)	687
Mva1269I	GAATGC	2 cut(s)	380, 675
MvaI	CCWGG	2 cut(s)	66, 510
MvnI	CGCG	1 cut(s)	837
MwoI	GCNNNNNNNGC	4 cut(s)	215, 266, 272, 635
NdeII	GATC	2 cut(s)	512, 720
NlaIII	CATG	6 cut(s)	332, 393, 447, 595, 710, 799
NlaIV	GGNNCC	5 cut(s)	476, 507, 514, 530, 639
NmuCI	GTSAC	1 cut(s)	143
NspI	RCATGY	1 cut(s)	799
PagI	TCATGA	1 cut(s)	328
PciI	ACATGT	1 cut(s)	795
PctI	GAATGC	2 cut(s)	380, 675
PfeI	GAWTC	1 cut(s)	61
PflFI	GACNNNGTC	1 cut(s)	44
PflMI	CCANNNNNTGG	1 cut(s)	712
PfoI	TCCNGGA	2 cut(s)	64, 508
PkrI	GCNGC	9 cut(s)	11, 262, 265, 268, 369, 631, 685, 823, 865
PleI	GAGTC	1 cut(s)	860
PmaCI	CACGTG	1 cut(s)	272
PmlI	CACGTG	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	860
Ppu21I	YACGTR	1 cut(s)	272
PscI	ACATGT	1 cut(s)	795
Psp6I	CCWGG	2 cut(s)	64, 508
PspCI	CACGTG	1 cut(s)	272
PspGI	CCWGG	2 cut(s)	64, 508
PspN4I	GGNNCC	5 cut(s)	476, 507, 514, 530, 639
PstI	CTGCAG	1 cut(s)	372
PstNI	CAGNNNCTG	1 cut(s)	367
PsuI	RGATCY	2 cut(s)	512, 720
PsyI	GACNNNGTC	1 cut(s)	44
RsaI	GTAC	3 cut(s)	530, 542, 800
RsaNI	GTAC	3 cut(s)	529, 541, 799
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	9 cut(s)	10, 261, 264, 267, 368, 630, 684, 822, 864
Sau3AI	GATC	2 cut(s)	512, 720
SchI	GAGTC	1 cut(s)	861
ScrFI	CCNGG	2 cut(s)	66, 510
SduI	GDGCHC	1 cut(s)	508
SetI	ASST	9 cut(s)	106, 121, 163, 211, 220, 262, 274, 310, 823
SfaNI	GCATC	1 cut(s)	630
SfcI	CTRYAG	2 cut(s)	368, 438
SmlI	CTYRAG	1 cut(s)	91
SmoI	CTYRAG	1 cut(s)	91
Sse9I	AATT	8 cut(s)	221, 279, 298, 318, 351, 399, 468, 687
SsiI	CCGC	6 cut(s)	10, 232, 264, 267, 632, 813
SspMI	CTAG	1 cut(s)	755
StyD4I	CCNGG	2 cut(s)	64, 508
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	4 cut(s)	20, 151, 533, 540
TaiI	ACGT	2 cut(s)	121, 274
TaqI	TCGA	1 cut(s)	59
TasI	AATT	8 cut(s)	221, 279, 298, 318, 351, 399, 468, 687
TatI	WGTACW	1 cut(s)	798
TauI	GCSGC	3 cut(s)	12, 266, 269
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TscAI	CASTG	4 cut(s)	154, 543, 676, 768
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	6 cut(s)	260, 367, 629, 683, 821, 863
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	5 cut(s)	344, 357, 484, 580, 721
TspGWI	ACGGA	2 cut(s)	183, 265
TspRI	CASTG	4 cut(s)	154, 543, 676, 768
Tth111I	GACNNNGTC	1 cut(s)	44
Van91I	CCANNNNNTGG	1 cut(s)	712
XapI	RAATTY	1 cut(s)	468
XbaI	TCTAGA	1 cut(s)	754
XceI	RCATGY	1 cut(s)	799
XcmI	CCANNNNNNNNNTGG	1 cut(s)	713
XmiI	GTMKAC	1 cut(s)	792
XspI	CTAG	1 cut(s)	755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.