Rroxscaffold_1G00069210

Secretory carrier-associated membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003098
Physical Location & Seq
Forward (+)
90202635 .. 90207997
5363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00069210.1

Sequence Viewer

Length: 870 bp
ATGGCCGGTCGATTCGATAGTAATCCCTTCGCTGAAGAAGAGGAAGTCAATCCGTTCTCGAATCATGGAAGCGTTGCTCCTGCCAAGAACTCCAGACTATCACCTCTGCCTCCGGAACGTGCTGGTTTCAATTACGGTATTGGTGAAACCGTCGATATACCTATTGATGGAAGTGGGGATTTGAAAAAGAGGGAGAGGGAACTCCAAGCTAAAGAAGCTGAACTGAGAAAGCGTGAAGAGATTGTAAAACGGAAAGAGGATGCTGCTGCACGAGCTGGAATTGTTCTCGAGGAAAAAAATTGGCCACCTTTCTTTCCACTTATCCATCATGATATTGCAAATGAAATACCAATTCATTTACAAAGGGTGATGTATGTTGCATTTATAACATGGTTAGGAATTGTTGCTTGCCTATTCTGGAATATAATAGCTGTGACTACTGCCTGGATTAAGGGTGAAGGGGTGAAAATTTGGTTCCTTGCGGTTATATATTTCATTGCTGGGGCCCCGGGATCTTATGTGTTGTGGTACCGTCCTCTTTACCGCGTGTTCAGGTCTGAGAGTGCATTGAAGTACGGATGGTTTTTCCTGTTCTACCTGTTTCACATTGGTTTCTGCATCTTTGCTGCGGTCGCTCCCCCTATAATCTTCAAAGGAAAATCTCTCACTGGCATTCTGGCTGCAATTGATGTTCTAGGCGATCATGCTTTGGTTGGGATCTTCTACTTCATTGGATTTGGCATGTTCTGTCTTGAATCAGTGCTTAGCATCTGGGTTATTCAGCAAGTATACATGTACTTCCGGGGAAGTGGTAAAGCAGCTGAAATGAGGCGTGAAGGAGCAAGACATGTTGCGAGGGCAGCAATATAA

Protein Analysis

289

Amino Acids

32.65

Weight (kDa)

8.66

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCAMP PF04144 98 - 269 6e-59 SCAMP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 386
Acc65I GGTACC 1 cut(s) 528
AccB1I GGYRCC 1 cut(s) 528
AccI GTMKAC 1 cut(s) 789
AccII CGCG 1 cut(s) 546
AccIII TCCGGA 1 cut(s) 112
AciI CCGC 3 cut(s) 482, 544, 629
AclWI GGATC 2 cut(s) 520, 725
AcoI YGGCCR 2 cut(s) 3, 302
AcsI RAATTY 1 cut(s) 468
AcuI CTGAAG 1 cut(s) 54
AfaI GTAC 3 cut(s) 530, 575, 797
AfiI CCNNNNNNNGG 1 cut(s) 167
AflIII ACRYGT 2 cut(s) 792, 847
AgsI TTSAA 5 cut(s) 130, 184, 571, 652, 755
AjnI CCWGG 1 cut(s) 443
AluBI AGCT 5 cut(s) 209, 218, 275, 431, 821
AluI AGCT 5 cut(s) 209, 218, 275, 431, 821
AlwI GGATC 2 cut(s) 520, 725
Ama87I CYCGRG 2 cut(s) 287, 508
Aor13HI TCCGGA 1 cut(s) 112
AoxI GGCC 3 cut(s) 3, 302, 504
ApaI GGGCCC 1 cut(s) 508
ApeKI GCWGC 6 cut(s) 263, 266, 626, 680, 818, 860
ApoI RAATTY 1 cut(s) 468
Asp718I GGTACC 1 cut(s) 528
AspS9I GGNCC 2 cut(s) 504, 505
AsuC2I CCSGG 3 cut(s) 509, 510, 803
AsuHPI GGTGA 5 cut(s) 93, 155, 379, 467, 475
AvaI CYCGRG 2 cut(s) 287, 508
BaeGI GKGCMC 1 cut(s) 508
BalI TGGCCA 1 cut(s) 304
BanI GGYRCC 1 cut(s) 528
BanII GRGCYC 1 cut(s) 508
BauI CACGAG 1 cut(s) 270
BbvI GCAGC 5 cut(s) 250, 253, 613, 667, 830
BccI CCATC 3 cut(s) 161, 333, 573
BciT130I CCWGG 1 cut(s) 445
BcnI CCSGG 3 cut(s) 509, 510, 803
BfaI CTAG 1 cut(s) 695
BisI GCNGC 6 cut(s) 264, 267, 627, 681, 819, 861
BlpI GCTNAGC 1 cut(s) 764
BlsI GCNGC 6 cut(s) 265, 268, 628, 682, 820, 862
Bme1390I CCNGG 4 cut(s) 445, 509, 510, 803
BmeT110I CYCGRG 2 cut(s) 287, 508
BmgT120I GGNCC 2 cut(s) 504, 505
BmiI GGNNCC 5 cut(s) 476, 505, 506, 507, 530
BmrFI CCNGG 4 cut(s) 445, 509, 510, 803
BmsI GCATC 3 cut(s) 250, 627, 777
BpmI CTGGAG 1 cut(s) 76
Bpu1102I GCTNAGC 1 cut(s) 764
BpuMI CCSGG 3 cut(s) 509, 510, 803
BsaBI GATNNNNATC 1 cut(s) 21
BsaJI CCNNGG 3 cut(s) 507, 508, 802
BsaWI WCCGGW 1 cut(s) 112
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 673
Bse3DI GCAATG 1 cut(s) 495
Bse8I GATNNNNATC 1 cut(s) 21
BseAI TCCGGA 1 cut(s) 112
BseBI CCWGG 1 cut(s) 445
BseDI CCNNGG 3 cut(s) 507, 508, 802
BseGI GGATG 2 cut(s) 265, 584
BseJI GATNNNNATC 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMI GCAATG 1 cut(s) 495
BseMII CTCAG 2 cut(s) 215, 549
BseNI ACTGG 1 cut(s) 673
BseSI GKGCMC 1 cut(s) 508
BseXI GCAGC 5 cut(s) 250, 253, 613, 667, 830
BseYI CCCAGC 1 cut(s) 500
BsgI GTGCAG 1 cut(s) 252
Bsh1236I CGCG 1 cut(s) 546
Bsh1285I CGRYCG 2 cut(s) 10, 633
BshFI GGCC 3 cut(s) 5, 304, 506
BshNI GGYRCC 1 cut(s) 528
BsiEI CGRYCG 2 cut(s) 10, 633
BsiHKCI CYCGRG 2 cut(s) 287, 508
BsiSI CCGG 4 cut(s) 6, 113, 509, 802
BslI CCNNNNNNNGG 1 cut(s) 167
BsmI GAATGC 1 cut(s) 672
BsnI GGCC 3 cut(s) 5, 304, 506
BsoBI CYCGRG 2 cut(s) 287, 508
Bsp120I GGGCCC 1 cut(s) 504
Bsp1286I GDGCHC 1 cut(s) 508
Bsp13I TCCGGA 1 cut(s) 112
Bsp143I GATC 3 cut(s) 512, 700, 717
Bsp1720I GCTNAGC 1 cut(s) 764
BspACI CCGC 3 cut(s) 482, 544, 629
BspANI GGCC 3 cut(s) 5, 304, 506
BspCNI CTCAG 2 cut(s) 216, 550
BspEI TCCGGA 1 cut(s) 112
BspFNI CGCG 1 cut(s) 546
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 5 cut(s) 476, 505, 506, 507, 530
BspPI GGATC 2 cut(s) 520, 725
BspT107I GGYRCC 1 cut(s) 528
BsrDI GCAATG 1 cut(s) 495
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 1 cut(s) 673
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 3 cut(s) 507, 508, 802
BssMI GATC 3 cut(s) 512, 700, 717
BssNAI GTATAC 1 cut(s) 790
BssSI CACGAG 1 cut(s) 270
Bst1107I GTATAC 1 cut(s) 790
Bst2BI CACGAG 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 445
Bst4CI ACNGT 3 cut(s) 137, 151, 533
Bst6I CTCTTC 2 cut(s) 33, 231
BstC8I GCNNGC 1 cut(s) 409
BstDEI CTNAG 3 cut(s) 224, 558, 764
BstF5I GGATG 2 cut(s) 265, 584
BstFNI CGCG 1 cut(s) 546
BstKTI GATC 3 cut(s) 515, 703, 720
BstMBI GATC 3 cut(s) 512, 700, 717
BstMCI CGRYCG 2 cut(s) 10, 633
BstMWI GCNNNNNNNGC 4 cut(s) 215, 272, 632, 860
BstNI CCWGG 1 cut(s) 445
BstNSI RCATGY 3 cut(s) 745, 796, 851
BstSCI CCNGG 4 cut(s) 443, 507, 508, 801
BstSLI GKGCMC 1 cut(s) 508
BstUI CGCG 1 cut(s) 546
BstV1I GCAGC 5 cut(s) 250, 253, 613, 667, 830
BstX2I RGATCY 2 cut(s) 512, 717
BstYI RGATCY 2 cut(s) 512, 717
BstZ17I GTATAC 1 cut(s) 790
BsuRI GGCC 3 cut(s) 5, 304, 506
BtsCI GGATG 2 cut(s) 265, 584
BtsIMutI CAGTG 2 cut(s) 666, 765
Cac8I GCNNGC 1 cut(s) 409
CciI TCATGA 1 cut(s) 328
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 2 cut(s) 504, 505
Cfr9I CCCGGG 1 cut(s) 508
Csp6I GTAC 3 cut(s) 529, 574, 796
CviAII CATG 7 cut(s) 65, 329, 390, 704, 742, 793, 848
CviJI RGCY 9 cut(s) 5, 209, 218, 275, 304, 431, 506, 680, 821
CviKI_1 RGCY 9 cut(s) 5, 209, 218, 275, 304, 431, 506, 680, 821
CviQI GTAC 3 cut(s) 529, 574, 796
DdeI CTNAG 3 cut(s) 224, 558, 764
DpnI GATC 3 cut(s) 514, 702, 719
DpnII GATC 3 cut(s) 512, 700, 717
EaeI YGGCCR 2 cut(s) 3, 302
Eam1104I CTCTTC 2 cut(s) 33, 231
EarI CTCTTC 2 cut(s) 33, 231
Eco24I GRGCYC 1 cut(s) 508
Eco57I CTGAAG 1 cut(s) 54
Eco88I CYCGRG 2 cut(s) 287, 508
EcoO109I RGGNCCY 2 cut(s) 504, 505
EcoRII CCWGG 1 cut(s) 443
EcoT38I GRGCYC 1 cut(s) 508
FaeI CATG 7 cut(s) 68, 332, 393, 707, 745, 796, 851
FatI CATG 7 cut(s) 64, 328, 389, 703, 741, 792, 847
FblI GTMKAC 1 cut(s) 789
Fnu4HI GCNGC 6 cut(s) 264, 267, 627, 681, 819, 861
FokI GGATG 2 cut(s) 272, 591
FriOI GRGCYC 1 cut(s) 508
Fsp4HI GCNGC 6 cut(s) 264, 267, 627, 681, 819, 861
FspBI CTAG 1 cut(s) 695
GluI GCNGC 6 cut(s) 264, 267, 627, 681, 819, 861
GsaI CCCAGC 1 cut(s) 504
GsuI CTGGAG 1 cut(s) 76
HaeIII GGCC 3 cut(s) 5, 304, 506
HapII CCGG 4 cut(s) 6, 113, 509, 802
Hin1II CATG 7 cut(s) 68, 332, 393, 707, 745, 796, 851
HinfI GANTC 3 cut(s) 12, 61, 755
HpaII CCGG 4 cut(s) 6, 113, 509, 802
HphI GGTGA 5 cut(s) 93, 155, 379, 467, 475
Hpy166II GTNNAC 1 cut(s) 790
Hpy188I TCNGA 1 cut(s) 559
Hpy188III TCNNGA 7 cut(s) 58, 93, 113, 287, 329, 418, 752
Hpy8I GTNNAC 1 cut(s) 790
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 3 cut(s) 37, 452, 830
HpyCH4III ACNGT 3 cut(s) 137, 151, 533
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 6 cut(s) 269, 338, 380, 566, 618, 683
HpyF10VI GCNNNNNNNGC 4 cut(s) 215, 272, 632, 860
HpyF3I CTNAG 3 cut(s) 224, 558, 764
HpySE526I ACGT 1 cut(s) 118
Hsp92II CATG 7 cut(s) 68, 332, 393, 707, 745, 796, 851
Kpn2I TCCGGA 1 cut(s) 112
KpnI GGTACC 1 cut(s) 532
Kzo9I GATC 3 cut(s) 512, 700, 717
LmnI GCTCC 3 cut(s) 82, 640, 839
Lsp1109I GCAGC 5 cut(s) 250, 253, 613, 667, 830
LweI GCATC 3 cut(s) 250, 627, 777
MaeI CTAG 1 cut(s) 695
MaeII ACGT 1 cut(s) 118
MaeIII GTNAC 1 cut(s) 433
MalI GATC 3 cut(s) 514, 702, 719
MboI GATC 3 cut(s) 512, 700, 717
MboII GAAGA 5 cut(s) 47, 50, 248, 640, 712
MfeI CAATTG 1 cut(s) 684
MflI RGATCY 2 cut(s) 512, 717
MhlI GDGCHC 1 cut(s) 508
MlsI TGGCCA 1 cut(s) 304
MluCI AATT 7 cut(s) 130, 279, 298, 351, 399, 468, 684
MluNI TGGCCA 1 cut(s) 304
Mox20I TGGCCA 1 cut(s) 304
MroI TCCGGA 1 cut(s) 112
MscI TGGCCA 1 cut(s) 304
MseI TTAA 1 cut(s) 450
Msp20I TGGCCA 1 cut(s) 304
MspA1I CMGCKG 1 cut(s) 821
MspI CCGG 4 cut(s) 6, 113, 509, 802
MspR9I CCNGG 4 cut(s) 445, 509, 510, 803
MunI CAATTG 1 cut(s) 684
Mva1269I GAATGC 1 cut(s) 672
MvaI CCWGG 1 cut(s) 445
MvnI CGCG 1 cut(s) 546
MwoI GCNNNNNNNGC 4 cut(s) 215, 272, 632, 860
NciI CCSGG 3 cut(s) 509, 510, 803
NdeII GATC 3 cut(s) 512, 700, 717
NlaIII CATG 7 cut(s) 68, 332, 393, 707, 745, 796, 851
NlaIV GGNNCC 5 cut(s) 476, 505, 506, 507, 530
NmuCI GTSAC 1 cut(s) 433
NspI RCATGY 3 cut(s) 745, 796, 851
PaeR7I CTCGAG 1 cut(s) 287
PagI TCATGA 1 cut(s) 328
PciI ACATGT 2 cut(s) 792, 847
PctI GAATGC 1 cut(s) 672
PfeI GAWTC 3 cut(s) 12, 61, 755
PkrI GCNGC 6 cut(s) 265, 268, 628, 682, 820, 862
PscI ACATGT 2 cut(s) 792, 847
PsiI TTATAA 1 cut(s) 386
Psp6I CCWGG 1 cut(s) 443
PspFI CCCAGC 1 cut(s) 500
PspGI CCWGG 1 cut(s) 443
PspN4I GGNNCC 5 cut(s) 476, 505, 506, 507, 530
PspOMI GGGCCC 1 cut(s) 504
PspPI GGNCC 2 cut(s) 504, 505
PsuI RGATCY 2 cut(s) 512, 717
PvuII CAGCTG 1 cut(s) 821
RsaI GTAC 3 cut(s) 530, 575, 797
RsaNI GTAC 3 cut(s) 529, 574, 796
SaqAI TTAA 1 cut(s) 450
SatI GCNGC 6 cut(s) 264, 267, 627, 681, 819, 861
Sau3AI GATC 3 cut(s) 512, 700, 717
Sau96I GGNCC 2 cut(s) 504, 505
ScrFI CCNGG 4 cut(s) 445, 509, 510, 803
SduI GDGCHC 1 cut(s) 508
SfaNI GCATC 3 cut(s) 250, 627, 777
Sfr274I CTCGAG 1 cut(s) 287
SlaI CTCGAG 1 cut(s) 287
SmaI CCCGGG 1 cut(s) 510
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 7 cut(s) 130, 279, 298, 351, 399, 468, 684
SsiI CCGC 3 cut(s) 482, 544, 629
SspMI CTAG 1 cut(s) 695
StyD4I CCNGG 4 cut(s) 443, 507, 508, 801
TaaI ACNGT 3 cut(s) 137, 151, 533
TaiI ACGT 1 cut(s) 121
TaqI TCGA 5 cut(s) 10, 15, 59, 153, 288
TasI AATT 7 cut(s) 130, 279, 298, 351, 399, 468, 684
TatI WGTACW 1 cut(s) 795
TfiI GAWTC 3 cut(s) 12, 61, 755
Tru1I TTAA 1 cut(s) 450
Tru9I TTAA 1 cut(s) 450
TscAI CASTG 2 cut(s) 673, 765
TseFI GTSAC 1 cut(s) 433
TseI GCWGC 6 cut(s) 263, 266, 626, 680, 818, 860
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 4 cut(s) 344, 357, 484, 718
TspGWI ACGGA 3 cut(s) 42, 265, 591
TspMI CCCGGG 1 cut(s) 508
TspRI CASTG 2 cut(s) 673, 765
XapI RAATTY 1 cut(s) 468
XceI RCATGY 3 cut(s) 745, 796, 851
XhoI CTCGAG 1 cut(s) 287
XmaI CCCGGG 1 cut(s) 508
XmiI GTMKAC 1 cut(s) 789
XspI CTAG 1 cut(s) 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.