RchiOBHm_Chr5g0007151

Secretory carrier-associated membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003098
Physical Location & Seq
Forward (+)
4495076 .. 4498407
3332 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28823

Sequence Viewer

Length: 561 bp
ATGGTTTTTCATGTTTCTGGTAATGTTGTCTCAGATTTCTTTGAAGAGGAGGAAGTCAATCCGTTCTCGAATCATGGAAGCGTTGCTCCTGCCAAGAACTCCAGACTACCACCTCTGCCTCCAGAACGTGCTGGTTTCAATTATGGTATTGGTGAAACCGTTGATATACCTATTGATGGAAGTGGGGATTTGAAAAAGAGGGAGAGGGAACTCCAAGCTAAAGAATCTGAACTGAGAAAGCATTGTAAAACAGAAAGAGGATGCTGCAGCACGAGCTGGAATTGTTCTGGAGGAAAAAATTGGCCTCCTTTCTTTCCACTTATCCATAATGATATTGCAAACGAAATACCAATTCATTTACAAAGGGTGATGTATGTTGCATTTACAACATGGTTAGGAATTGTTGCTTGCCTATTCTGGAATATAATAGCTGTGACTACTGCCTGGATTAAGAGTGAAGGGGTGAAAATTTGGTTCCTTGCGGTTATATATTTCATTGCTGGGGCCCCTGGATCTTATGTGTTGTGGTACCGTCCTCTTTGCCGTGTGTTCAGGTCTTAG

Protein Analysis

186

Amino Acids

21.02

Weight (kDa)

7.63

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCAMP PF04144 99 - 185 2.9e-29 SCAMP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 528
AccB1I GGYRCC 1 cut(s) 528
AciI CCGC 1 cut(s) 482
AclWI GGATC 1 cut(s) 520
AcsI RAATTY 1 cut(s) 468
AfaI GTAC 1 cut(s) 530
AfiI CCNNNNNNNGG 1 cut(s) 176
AgsI TTSAA 3 cut(s) 44, 139, 193
AjnI CCWGG 2 cut(s) 443, 508
AluBI AGCT 3 cut(s) 218, 276, 431
AluI AGCT 3 cut(s) 218, 276, 431
Alw26I GTCTC 1 cut(s) 34
AlwI GGATC 1 cut(s) 520
AoxI GGCC 2 cut(s) 302, 504
ApaI GGGCCC 1 cut(s) 508
ApeKI GCWGC 2 cut(s) 264, 267
ApoI RAATTY 1 cut(s) 468
Asp718I GGTACC 1 cut(s) 528
AspS9I GGNCC 2 cut(s) 504, 505
AsuHPI GGTGA 3 cut(s) 164, 379, 475
BaeGI GKGCMC 1 cut(s) 508
BanI GGYRCC 1 cut(s) 528
BanII GRGCYC 1 cut(s) 508
BauI CACGAG 1 cut(s) 271
BbvI GCAGC 2 cut(s) 251, 279
BccI CCATC 1 cut(s) 170
BceAI ACGGC 1 cut(s) 528
BciT130I CCWGG 2 cut(s) 445, 510
BcoDI GTCTC 1 cut(s) 34
BfmI CTRYAG 1 cut(s) 265
BisI GCNGC 2 cut(s) 265, 268
BlsI GCNGC 2 cut(s) 266, 269
Bme1390I CCNGG 2 cut(s) 445, 510
BmgT120I GGNCC 2 cut(s) 504, 505
BmiI GGNNCC 5 cut(s) 476, 505, 506, 507, 530
BmrFI CCNGG 2 cut(s) 445, 510
BmsI GCATC 1 cut(s) 251
BpmI CTGGAG 3 cut(s) 85, 105, 309
BsaJI CCNNGG 1 cut(s) 508
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse3DI GCAATG 1 cut(s) 495
BseBI CCWGG 2 cut(s) 445, 510
BseDI CCNNGG 1 cut(s) 508
BseGI GGATG 1 cut(s) 266
BseLI CCNNNNNNNGG 1 cut(s) 176
BseMI GCAATG 1 cut(s) 495
BseMII CTCAG 2 cut(s) 45, 224
BseRI GAGGAG 1 cut(s) 62
BseSI GKGCMC 1 cut(s) 508
BseXI GCAGC 2 cut(s) 251, 279
BseYI CCCAGC 1 cut(s) 500
BshFI GGCC 2 cut(s) 304, 506
BshNI GGYRCC 1 cut(s) 528
BslI CCNNNNNNNGG 1 cut(s) 176
BsmAI GTCTC 1 cut(s) 34
BsnI GGCC 2 cut(s) 304, 506
Bsp120I GGGCCC 1 cut(s) 504
Bsp1286I GDGCHC 1 cut(s) 508
Bsp143I GATC 1 cut(s) 512
BspACI CCGC 1 cut(s) 482
BspANI GGCC 2 cut(s) 304, 506
BspCNI CTCAG 2 cut(s) 44, 225
BspLI GGNNCC 5 cut(s) 476, 505, 506, 507, 530
BspMAI CTGCAG 1 cut(s) 269
BspPI GGATC 1 cut(s) 520
BspT107I GGYRCC 1 cut(s) 528
BsrDI GCAATG 1 cut(s) 495
BssECI CCNNGG 1 cut(s) 508
BssMI GATC 1 cut(s) 512
BssSI CACGAG 1 cut(s) 271
Bst2BI CACGAG 1 cut(s) 271
Bst2UI CCWGG 2 cut(s) 445, 510
Bst4CI ACNGT 2 cut(s) 160, 533
Bst6I CTCTTC 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 409
BstDEI CTNAG 3 cut(s) 31, 233, 558
BstF5I GGATG 1 cut(s) 266
BstKTI GATC 1 cut(s) 515
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 1 cut(s) 512
BstMWI GCNNNNNNNGC 1 cut(s) 273
BstNI CCWGG 2 cut(s) 445, 510
BstSCI CCNGG 2 cut(s) 443, 508
BstSFI CTRYAG 1 cut(s) 265
BstSLI GKGCMC 1 cut(s) 508
BstV1I GCAGC 2 cut(s) 251, 279
BstX2I RGATCY 1 cut(s) 512
BstYI RGATCY 1 cut(s) 512
BsuRI GGCC 2 cut(s) 304, 506
BtsCI GGATG 1 cut(s) 266
Cac8I GCNNGC 1 cut(s) 409
Cfr13I GGNCC 2 cut(s) 504, 505
Csp6I GTAC 1 cut(s) 529
CviAII CATG 3 cut(s) 11, 74, 390
CviJI RGCY 5 cut(s) 218, 276, 304, 431, 506
CviKI_1 RGCY 5 cut(s) 218, 276, 304, 431, 506
CviQI GTAC 1 cut(s) 529
DdeI CTNAG 3 cut(s) 31, 233, 558
DpnI GATC 1 cut(s) 514
DpnII GATC 1 cut(s) 512
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Eco24I GRGCYC 1 cut(s) 508
EcoO109I RGGNCCY 2 cut(s) 504, 505
EcoRII CCWGG 2 cut(s) 443, 508
EcoT38I GRGCYC 1 cut(s) 508
FaeI CATG 3 cut(s) 14, 77, 393
FatI CATG 3 cut(s) 10, 73, 389
Fnu4HI GCNGC 2 cut(s) 265, 268
FokI GGATG 1 cut(s) 273
FriOI GRGCYC 1 cut(s) 508
Fsp4HI GCNGC 2 cut(s) 265, 268
GluI GCNGC 2 cut(s) 265, 268
GsaI CCCAGC 1 cut(s) 504
GsuI CTGGAG 3 cut(s) 85, 105, 309
HaeIII GGCC 2 cut(s) 304, 506
Hin1II CATG 3 cut(s) 14, 77, 393
HinfI GANTC 2 cut(s) 70, 224
HphI GGTGA 3 cut(s) 164, 379, 475
Hpy188I TCNGA 2 cut(s) 34, 229
Hpy188III TCNNGA 5 cut(s) 67, 102, 122, 288, 418
HpyAV CCTTC 1 cut(s) 452
HpyCH4III ACNGT 2 cut(s) 160, 533
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 3 cut(s) 267, 338, 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 273
HpyF3I CTNAG 3 cut(s) 31, 233, 558
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 3 cut(s) 14, 77, 393
KpnI GGTACC 1 cut(s) 532
Kzo9I GATC 1 cut(s) 512
LmnI GCTCC 1 cut(s) 91
Lsp1109I GCAGC 2 cut(s) 251, 279
LweI GCATC 1 cut(s) 251
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 1 cut(s) 433
MalI GATC 1 cut(s) 514
MboI GATC 1 cut(s) 512
MboII GAAGA 1 cut(s) 56
MflI RGATCY 1 cut(s) 512
MhlI GDGCHC 1 cut(s) 508
MluCI AATT 6 cut(s) 139, 280, 298, 351, 399, 468
MseI TTAA 1 cut(s) 450
MspR9I CCNGG 2 cut(s) 445, 510
MvaI CCWGG 2 cut(s) 445, 510
MwoI GCNNNNNNNGC 1 cut(s) 273
NdeII GATC 1 cut(s) 512
NlaIII CATG 3 cut(s) 14, 77, 393
NlaIV GGNNCC 5 cut(s) 476, 505, 506, 507, 530
NmuCI GTSAC 1 cut(s) 433
PfeI GAWTC 2 cut(s) 70, 224
PkrI GCNGC 2 cut(s) 266, 269
Psp6I CCWGG 2 cut(s) 443, 508
PspFI CCCAGC 1 cut(s) 500
PspGI CCWGG 2 cut(s) 443, 508
PspN4I GGNNCC 5 cut(s) 476, 505, 506, 507, 530
PspOMI GGGCCC 1 cut(s) 504
PspPI GGNCC 2 cut(s) 504, 505
PstI CTGCAG 1 cut(s) 269
PsuI RGATCY 1 cut(s) 512
RsaI GTAC 1 cut(s) 530
RsaNI GTAC 1 cut(s) 529
SaqAI TTAA 1 cut(s) 450
SatI GCNGC 2 cut(s) 265, 268
Sau3AI GATC 1 cut(s) 512
Sau96I GGNCC 2 cut(s) 504, 505
ScrFI CCNGG 2 cut(s) 445, 510
SduI GDGCHC 1 cut(s) 508
SetI ASST 7 cut(s) 115, 130, 172, 220, 278, 433, 557
SfaNI GCATC 1 cut(s) 251
SfcI CTRYAG 1 cut(s) 265
Sse9I AATT 6 cut(s) 139, 280, 298, 351, 399, 468
SsiI CCGC 1 cut(s) 482
StyD4I CCNGG 2 cut(s) 443, 508
TaaI ACNGT 2 cut(s) 160, 533
TaiI ACGT 1 cut(s) 130
TaqI TCGA 1 cut(s) 68
TasI AATT 6 cut(s) 139, 280, 298, 351, 399, 468
TfiI GAWTC 2 cut(s) 70, 224
Tru1I TTAA 1 cut(s) 450
Tru9I TTAA 1 cut(s) 450
TseFI GTSAC 1 cut(s) 433
TseI GCWGC 2 cut(s) 264, 267
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 2 cut(s) 344, 484
TspGWI ACGGA 1 cut(s) 51
XapI RAATTY 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.