Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003098

Physical Location & Seq

Genomic Coordinates Forward (+)

4611190 .. 4615728

Gene Structure 4539 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28837

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGTTTTTCATGTTTCTGGTAATGTTGTCTCAGATTTCTTTGAAGAGGGGGAAGTCAATCCGTTCTCGAATCATGGAAGCGTTGCTCCTGCCAAGAACTCCAGACTACCACCTCTGCCTCCAGAACGTGCTGGTTTCAATTATGGTATTGGTGAAACCATTGATATACCTATTGATGGAAGTGGGGAGGATTTGAAAAAGAGGGAGAGGGAACTCCAAGCTAAAGAATCTGAACTGAGAAAGCGTGAAGAGATTGTAAAACAGAAAGAGGATGCTGCAGCACGAGCTGGAATTGTTCTGGAGGAAAAAAATTGGCCTCCTTTCTTTCCACTTATCCATCCTGATATTGCAAACGAAATACCAATTCATTTACAAAGGGTGATGTATGTTGCATTTACAACATGGTTAGGAATTGTTGCTTGCCTATTCTGGAATATAAGAGCTGTGACTACTGCCTGGATTAAGGGTGAAGGGGTGACAATTTGGTTCCTTGCGGTTATATATTTCATTGCTGGGGCCCCTGGATCTTATGTGTCGTGGTACCGTCCTCTTTGCTGTGTGTTCAGGTCTGAGAGTGCTTTGAAGTACAGATGGTTTTTCATGTTTCTGATCCACATTGGCTTCTGCATCTTTGCTGCGGTTGCTCCCCCTATAATGTTCGAAGGAAAATCTCTCATTGGCATTCTGGCTGCAATTGATATTCGAAGTGATCTTTGGTTAGGTTGTTCTACTGTATCGGATTCGGCATGTTTTGTCTTGAATCAGTGCTTAGCATCTGGATTATTCAGCAAGTATACATGTACGTCCCGGGAGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0097708 GO:0098657 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

272

Amino Acids

30.58

Weight (kDa)

6.0

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCAMP	PF04144	102 - 258	3.5e-40	SCAMP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11180 AT1G11180 AT1G11180 AT1G61250 AT1G61250 AT2G20840 AT2G20840 AT2G20840
fragaria_vesca	FvH4_3g04440
malus_domestica	MD05G1323100.v1.1 MD10G1300900.v1.1
prunus_persica	Prupe.4G039500_v2.0.a1 Prupe.4G039500_v2.0.a1
pyrus_communis	pycom05g29740 pycom10g25380
rosa_chinensis	RchiOBHm_Chr5g0006841 RchiOBHm_Chr5g0006891 RchiOBHm_Chr5g0007151 RchiOBHm_Chr5g0007321
rosa_laevigata	RLG00000031433 RLG00000031444
rosa_multiflora	Rmu_sc0001044.1_g000035 Rmu_sc0001838.1_g000001 Rmu_sc0003826.1_g000003
rosa_roxburghii	Rroxscaffold_1G00069210
rosa_rugosa	Rorug04G0424900
rosa_samantha	Rh5AG052600 Rh5AG053300 Rh5BG051500 Rh5BG052300 Rh5CG060200 Rh5CG060900 Rh5CG062300 Rh5DG050800
rosa_wichuraiana	Rw5G005140 Rw5G005200 Rw5G005510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	540
AccB1I	GGYRCC	1 cut(s)	540
AccI	GTMKAC	1 cut(s)	794
AciI	CCGC	2 cut(s)	494, 638
AclWI	GGATC	2 cut(s)	532, 604
AfaI	GTAC	3 cut(s)	542, 587, 802
AfiI	CCNNNNNNNGG	2 cut(s)	176, 813
AflIII	ACRYGT	1 cut(s)	797
AgsI	TTSAA	5 cut(s)	44, 139, 196, 583, 760
AjnI	CCWGG	2 cut(s)	455, 520
AjuI	GAANNNNNNNTTGG	2 cut(s)	697, 729
AluBI	AGCT	3 cut(s)	221, 287, 443
AluI	AGCT	3 cut(s)	221, 287, 443
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	2 cut(s)	532, 604
Ama87I	CYCGRG	1 cut(s)	807
AoxI	GGCC	2 cut(s)	314, 516
ApaI	GGGCCC	1 cut(s)	520
ApeKI	GCWGC	4 cut(s)	275, 278, 635, 689
Asp718I	GGTACC	1 cut(s)	540
AspS9I	GGNCC	2 cut(s)	516, 517
AsuC2I	CCSGG	2 cut(s)	808, 809
AsuHPI	GGTGA	4 cut(s)	164, 391, 479, 487
AsuII	TTCGAA	2 cut(s)	660, 703
AvaI	CYCGRG	1 cut(s)	807
BaeGI	GKGCMC	1 cut(s)	520
BanI	GGYRCC	1 cut(s)	540
BanII	GRGCYC	1 cut(s)	520
BauI	CACGAG	1 cut(s)	282
BbvI	GCAGC	4 cut(s)	262, 290, 622, 676
BccI	CCATC	3 cut(s)	170, 345, 585
BciT130I	CCWGG	2 cut(s)	457, 522
BcnI	CCSGG	2 cut(s)	808, 809
BcoDI	GTCTC	1 cut(s)	34
BfmI	CTRYAG	1 cut(s)	276
BisI	GCNGC	4 cut(s)	276, 279, 636, 690
BlpI	GCTNAGC	1 cut(s)	769
BlsI	GCNGC	4 cut(s)	277, 280, 637, 691
Bme1390I	CCNGG	4 cut(s)	457, 522, 808, 809
BmeT110I	CYCGRG	1 cut(s)	807
BmgT120I	GGNCC	2 cut(s)	516, 517
BmiI	GGNNCC	5 cut(s)	488, 517, 518, 519, 542
BmrFI	CCNGG	4 cut(s)	457, 522, 808, 809
BmsI	GCATC	3 cut(s)	262, 636, 782
BpmI	CTGGAG	3 cut(s)	85, 105, 320
Bpu1102I	GCTNAGC	1 cut(s)	769
Bpu14I	TTCGAA	2 cut(s)	660, 703
BpuMI	CCSGG	2 cut(s)	808, 809
BsaJI	CCNNGG	2 cut(s)	520, 807
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 813
Bse3DI	GCAATG	1 cut(s)	507
BseBI	CCWGG	2 cut(s)	457, 522
BseDI	CCNNGG	2 cut(s)	520, 807
BseGI	GGATG	2 cut(s)	277, 337
BseLI	CCNNNNNNNGG	2 cut(s)	176, 813
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	3 cut(s)	45, 227, 561
BseSI	GKGCMC	1 cut(s)	520
BseXI	GCAGC	4 cut(s)	262, 290, 622, 676
BseYI	CCCAGC	1 cut(s)	512
BshFI	GGCC	2 cut(s)	316, 518
BshNI	GGYRCC	1 cut(s)	540
BsiHKCI	CYCGRG	1 cut(s)	807
BsiSI	CCGG	1 cut(s)	808
BslFI	GGGAC	1 cut(s)	790
BslI	CCNNNNNNNGG	2 cut(s)	176, 813
BsmAI	GTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	790
BsmI	GAATGC	1 cut(s)	681
BsnI	GGCC	2 cut(s)	316, 518
BsoBI	CYCGRG	1 cut(s)	807
Bsp119I	TTCGAA	2 cut(s)	660, 703
Bsp120I	GGGCCC	1 cut(s)	516
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp143I	GATC	3 cut(s)	524, 609, 709
Bsp1720I	GCTNAGC	1 cut(s)	769
BspACI	CCGC	2 cut(s)	494, 638
BspANI	GGCC	2 cut(s)	316, 518
BspCNI	CTCAG	3 cut(s)	44, 228, 562
BspLI	GGNNCC	5 cut(s)	488, 517, 518, 519, 542
BspMAI	CTGCAG	1 cut(s)	280
BspPI	GGATC	2 cut(s)	532, 604
BspT104I	TTCGAA	2 cut(s)	660, 703
BspT107I	GGYRCC	1 cut(s)	540
BsrDI	GCAATG	1 cut(s)	507
BssECI	CCNNGG	2 cut(s)	520, 807
BssMI	GATC	3 cut(s)	524, 609, 709
BssNAI	GTATAC	1 cut(s)	795
BssSI	CACGAG	1 cut(s)	282
Bst1107I	GTATAC	1 cut(s)	795
Bst2BI	CACGAG	1 cut(s)	282
Bst2UI	CCWGG	2 cut(s)	457, 522
Bst4CI	ACNGT	2 cut(s)	545, 733
Bst6I	CTCTTC	2 cut(s)	39, 243
BstBI	TTCGAA	2 cut(s)	660, 703
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	4 cut(s)	31, 236, 570, 769
BstF5I	GGATG	2 cut(s)	277, 337
BstKTI	GATC	3 cut(s)	527, 612, 712
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	3 cut(s)	524, 609, 709
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 641
BstNI	CCWGG	2 cut(s)	457, 522
BstNSI	RCATGY	2 cut(s)	750, 801
BstSCI	CCNGG	4 cut(s)	455, 520, 806, 807
BstSFI	CTRYAG	1 cut(s)	276
BstSLI	GKGCMC	1 cut(s)	520
BstV1I	GCAGC	4 cut(s)	262, 290, 622, 676
BstX2I	RGATCY	1 cut(s)	524
BstYI	RGATCY	1 cut(s)	524
BstZ17I	GTATAC	1 cut(s)	795
BsuRI	GGCC	2 cut(s)	316, 518
BtsCI	GGATG	2 cut(s)	277, 337
BtsIMutI	CAGTG	1 cut(s)	770
Cac8I	GCNNGC	1 cut(s)	421
Cfr13I	GGNCC	2 cut(s)	516, 517
Cfr9I	CCCGGG	1 cut(s)	807
Csp6I	GTAC	3 cut(s)	541, 586, 801
CviAII	CATG	6 cut(s)	11, 74, 402, 601, 747, 798
CviJI	RGCY	7 cut(s)	221, 287, 316, 443, 518, 621, 689
CviKI_1	RGCY	7 cut(s)	221, 287, 316, 443, 518, 621, 689
CviQI	GTAC	3 cut(s)	541, 586, 801
DdeI	CTNAG	4 cut(s)	31, 236, 570, 769
DpnI	GATC	3 cut(s)	526, 611, 711
DpnII	GATC	3 cut(s)	524, 609, 709
Eam1104I	CTCTTC	2 cut(s)	39, 243
EarI	CTCTTC	2 cut(s)	39, 243
Eco24I	GRGCYC	1 cut(s)	520
Eco88I	CYCGRG	1 cut(s)	807
EcoO109I	RGGNCCY	2 cut(s)	516, 517
EcoRII	CCWGG	2 cut(s)	455, 520
EcoT38I	GRGCYC	1 cut(s)	520
FaeI	CATG	6 cut(s)	14, 77, 405, 604, 750, 801
FaqI	GGGAC	1 cut(s)	790
FatI	CATG	6 cut(s)	10, 73, 401, 600, 746, 797
FblI	GTMKAC	1 cut(s)	794
Fnu4HI	GCNGC	4 cut(s)	276, 279, 636, 690
FokI	GGATG	2 cut(s)	284, 324
FriOI	GRGCYC	1 cut(s)	520
Fsp4HI	GCNGC	4 cut(s)	276, 279, 636, 690
GluI	GCNGC	4 cut(s)	276, 279, 636, 690
GsaI	CCCAGC	1 cut(s)	516
GsuI	CTGGAG	3 cut(s)	85, 105, 320
HaeIII	GGCC	2 cut(s)	316, 518
HapII	CCGG	1 cut(s)	808
Hin1II	CATG	6 cut(s)	14, 77, 405, 604, 750, 801
HinfI	GANTC	4 cut(s)	70, 227, 740, 760
HpaII	CCGG	1 cut(s)	808
HphI	GGTGA	4 cut(s)	164, 391, 479, 487
Hpy166II	GTNNAC	1 cut(s)	795
Hpy188I	TCNGA	5 cut(s)	34, 232, 571, 609, 739
Hpy188III	TCNNGA	8 cut(s)	67, 102, 122, 299, 341, 430, 757, 777
Hpy8I	GTNNAC	1 cut(s)	795
HpyAV	CCTTC	2 cut(s)	464, 656
HpyCH4III	ACNGT	2 cut(s)	545, 733
HpyCH4IV	ACGT	2 cut(s)	127, 803
HpyCH4V	TGCA	5 cut(s)	278, 350, 392, 627, 692
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 641
HpyF3I	CTNAG	4 cut(s)	31, 236, 570, 769
HpySE526I	ACGT	2 cut(s)	127, 803
Hsp92II	CATG	6 cut(s)	14, 77, 405, 604, 750, 801
KpnI	GGTACC	1 cut(s)	544
Kzo9I	GATC	3 cut(s)	524, 609, 709
LmnI	GCTCC	2 cut(s)	91, 649
Lsp1109I	GCAGC	4 cut(s)	262, 290, 622, 676
LweI	GCATC	3 cut(s)	262, 636, 782
MaeII	ACGT	2 cut(s)	127, 803
MaeIII	GTNAC	2 cut(s)	445, 475
MalI	GATC	3 cut(s)	526, 611, 711
MboI	GATC	3 cut(s)	524, 609, 709
MboII	GAAGA	2 cut(s)	56, 260
MfeI	CAATTG	1 cut(s)	693
MflI	RGATCY	1 cut(s)	524
MhlI	GDGCHC	1 cut(s)	520
MluCI	AATT	7 cut(s)	139, 291, 310, 363, 411, 480, 693
MseI	TTAA	1 cut(s)	462
MspI	CCGG	1 cut(s)	808
MspR9I	CCNGG	4 cut(s)	457, 522, 808, 809
MunI	CAATTG	1 cut(s)	693
Mva1269I	GAATGC	1 cut(s)	681
MvaI	CCWGG	2 cut(s)	457, 522
MwoI	GCNNNNNNNGC	2 cut(s)	284, 641
NciI	CCSGG	2 cut(s)	808, 809
NdeII	GATC	3 cut(s)	524, 609, 709
NlaIII	CATG	6 cut(s)	14, 77, 405, 604, 750, 801
NlaIV	GGNNCC	5 cut(s)	488, 517, 518, 519, 542
NmuCI	GTSAC	2 cut(s)	445, 475
NspI	RCATGY	2 cut(s)	750, 801
NspV	TTCGAA	2 cut(s)	660, 703
PciI	ACATGT	1 cut(s)	797
PctI	GAATGC	1 cut(s)	681
PfeI	GAWTC	4 cut(s)	70, 227, 740, 760
PkrI	GCNGC	4 cut(s)	277, 280, 637, 691
PscI	ACATGT	1 cut(s)	797
Psp6I	CCWGG	2 cut(s)	455, 520
PspFI	CCCAGC	1 cut(s)	512
PspGI	CCWGG	2 cut(s)	455, 520
PspN4I	GGNNCC	5 cut(s)	488, 517, 518, 519, 542
PspOMI	GGGCCC	1 cut(s)	516
PspPI	GGNCC	2 cut(s)	516, 517
PstI	CTGCAG	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	524
RsaI	GTAC	3 cut(s)	542, 587, 802
RsaNI	GTAC	3 cut(s)	541, 586, 801
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	4 cut(s)	276, 279, 636, 690
Sau3AI	GATC	3 cut(s)	524, 609, 709
Sau96I	GGNCC	2 cut(s)	516, 517
ScrFI	CCNGG	4 cut(s)	457, 522, 808, 809
SduI	GDGCHC	1 cut(s)	520
SetI	ASST	9 cut(s)	115, 130, 172, 223, 289, 445, 569, 724, 806
SfaNI	GCATC	3 cut(s)	262, 636, 782
SfcI	CTRYAG	1 cut(s)	276
SfuI	TTCGAA	2 cut(s)	660, 703
SmaI	CCCGGG	1 cut(s)	809
Sse9I	AATT	7 cut(s)	139, 291, 310, 363, 411, 480, 693
SsiI	CCGC	2 cut(s)	494, 638
StyD4I	CCNGG	4 cut(s)	455, 520, 806, 807
TaaI	ACNGT	2 cut(s)	545, 733
TaiI	ACGT	2 cut(s)	130, 806
TaqI	TCGA	3 cut(s)	68, 660, 703
TasI	AATT	7 cut(s)	139, 291, 310, 363, 411, 480, 693
TatI	WGTACW	1 cut(s)	585
TfiI	GAWTC	4 cut(s)	70, 227, 740, 760
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	1 cut(s)	770
TseFI	GTSAC	2 cut(s)	445, 475
TseI	GCWGC	4 cut(s)	275, 278, 635, 689
Tsp45I	GTSAC	2 cut(s)	445, 475
TspDTI	ATGAA	3 cut(s)	356, 496, 589
TspGWI	ACGGA	1 cut(s)	51
TspMI	CCCGGG	1 cut(s)	807
TspRI	CASTG	1 cut(s)	770
XceI	RCATGY	2 cut(s)	750, 801
XmaI	CCCGGG	1 cut(s)	807
XmiI	GTMKAC	1 cut(s)	794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.