Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003098

Physical Location & Seq

Genomic Coordinates Reverse (-)

2549192 .. 2553125

Gene Structure 3934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g04440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCTGGTCGATACGATAGTAACCCCTTCGCTGAAGAAGAGGAAGTCAATCCGTTCTCGAATCATGGAAGCGTTGCTCCTGCCAAGAACTCGAGACTGTCACCTCTGCCTCCAGAGCGTGCTGGTTTCAATTATGGTATTGGTGAAACCGTCGATATACCTATTGATGGAAGTGGGGATTTGAAAAAGAGGGAGAGGGAACTCCAAGCTAAAGAAGCTGAACTAAGAAAGCGTGAAGAGGTTGTAAAACGGAAAGAAGATGCTGCAGCACGTGCTGGAATTGTTCTCGAGGAAAAAAATTGGCCGCCATTCTTTCCACTCATCCATCACGATATTGCAAATGAAATCCCAATTCATTTACAAAGGGTGCAGTATGTCGCATTTATAACATGGTTAGGAATTATTGCTTGCCTATTCTGGAATATCATAGCTGTGACCACTGCCTGGATCAAGGGTGAAGGGGTGAAAATATGGTTCCTTGCGGTTATATATTTCATTGCTGGGGCACCTGGATCTTATGTGCTGTGGTACCGTCCTCTTTACCGTGTGTTCAGGTCTGAGAGTGCTTTGAAGTACGGATGGTTTTTCATGTTCTATCTGTTTCACATTGGCTTCTGCATCTTTGCTGCGGTTGCTCCCCCTATAATCTTCAAAGGAAAATCTCTCACTGGTATTCTGGCTGCAATTGATGTTCTGAGCGATCATGCTTTGGTTGGGATCTTCTACTTCATTGGATTCGGCATGTTTTGTCTTGAATCAGTGCTTAGCATCTGGGTTATTCAGCAAGTATACATGTACTTCCGGGGAAGTGGTAAAGCTGCTGAAATGAGGCGGGAGGGAGCAAGACATGTTGTGAGGGCAGCAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0097708 GO:0098657 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

290

Amino Acids

32.74

Weight (kDa)

8.65

Isoelectric Point (pI)

44.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCAMP	PF04144	98 - 269	7.2e-59	SCAMP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11180 AT1G11180 AT1G11180 AT1G61250 AT1G61250 AT2G20840 AT2G20840 AT2G20840
fragaria_vesca	FvH4_3g04440
malus_domestica	MD05G1323100.v1.1 MD10G1300900.v1.1
prunus_persica	Prupe.4G039500_v2.0.a1 Prupe.4G039500_v2.0.a1
pyrus_communis	pycom05g29740 pycom10g25380
rosa_chinensis	RchiOBHm_Chr5g0006841 RchiOBHm_Chr5g0006891 RchiOBHm_Chr5g0007151 RchiOBHm_Chr5g0007321
rosa_laevigata	RLG00000031433 RLG00000031444
rosa_multiflora	Rmu_sc0001044.1_g000035 Rmu_sc0001838.1_g000001 Rmu_sc0003826.1_g000003
rosa_roxburghii	Rroxscaffold_1G00069210
rosa_rugosa	Rorug04G0424900
rosa_samantha	Rh5AG052600 Rh5AG053300 Rh5BG051500 Rh5BG052300 Rh5CG060200 Rh5CG060900 Rh5CG062300 Rh5DG050800
rosa_wichuraiana	Rw5G005140 Rw5G005200 Rw5G005510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	386
Acc65I	GGTACC	1 cut(s)	528
AccB1I	GGYRCC	2 cut(s)	505, 528
AccB7I	CCANNNNNTGG	1 cut(s)	444
AccI	GTMKAC	1 cut(s)	789
AciI	CCGC	4 cut(s)	305, 482, 629, 832
AclWI	GGATC	3 cut(s)	455, 520, 725
AcoI	YGGCCR	1 cut(s)	302
AcuI	CTGAAG	1 cut(s)	54
AcvI	CACGTG	1 cut(s)	272
AfaI	GTAC	3 cut(s)	530, 575, 797
AfiI	CCNNNNNNNGG	2 cut(s)	167, 444
AflIII	ACRYGT	2 cut(s)	792, 847
AgsI	TTSAA	5 cut(s)	130, 184, 571, 652, 755
AjnI	CCWGG	2 cut(s)	443, 508
AluBI	AGCT	4 cut(s)	209, 218, 431, 818
AluI	AGCT	4 cut(s)	209, 218, 431, 818
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	3 cut(s)	455, 520, 725
Ama87I	CYCGRG	2 cut(s)	91, 287
AoxI	GGCC	1 cut(s)	302
ApeKI	GCWGC	6 cut(s)	263, 266, 626, 680, 818, 860
Asp718I	GGTACC	1 cut(s)	528
AsuC2I	CCSGG	1 cut(s)	803
AsuHPI	GGTGA	4 cut(s)	93, 155, 467, 475
AvaI	CYCGRG	2 cut(s)	91, 287
BaeGI	GKGCMC	1 cut(s)	508
BaeI	ACNNNNGTAYC	1 cut(s)	37
BanI	GGYRCC	2 cut(s)	505, 528
BbrPI	CACGTG	1 cut(s)	272
BbvI	GCAGC	5 cut(s)	250, 278, 613, 667, 805
BccI	CCATC	3 cut(s)	161, 333, 573
BciT130I	CCWGG	2 cut(s)	445, 510
BcnI	CCSGG	1 cut(s)	803
BcoDI	GTCTC	1 cut(s)	88
BfmI	CTRYAG	1 cut(s)	264
BisI	GCNGC	7 cut(s)	264, 267, 305, 627, 681, 819, 861
BlpI	GCTNAGC	1 cut(s)	764
BlsI	GCNGC	7 cut(s)	265, 268, 306, 628, 682, 820, 862
Bme1390I	CCNGG	3 cut(s)	445, 510, 803
BmeT110I	CYCGRG	2 cut(s)	91, 287
BmiI	GGNNCC	3 cut(s)	476, 507, 530
BmrFI	CCNGG	3 cut(s)	445, 510, 803
BmsI	GCATC	3 cut(s)	250, 627, 777
BpmI	CTGGAG	1 cut(s)	96
Bpu1102I	GCTNAGC	1 cut(s)	764
BpuMI	CCSGG	1 cut(s)	803
BsaAI	YACGTR	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	802
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 444
Bse1I	ACTGG	1 cut(s)	673
Bse3DI	GCAATG	1 cut(s)	495
BseBI	CCWGG	2 cut(s)	445, 510
BseDI	CCNNGG	1 cut(s)	802
BseGI	GGATG	2 cut(s)	321, 584
BseLI	CCNNNNNNNGG	2 cut(s)	167, 444
BseMI	GCAATG	1 cut(s)	495
BseMII	CTCAG	2 cut(s)	549, 686
BseNI	ACTGG	1 cut(s)	673
BseSI	GKGCMC	1 cut(s)	508
BseXI	GCAGC	5 cut(s)	250, 278, 613, 667, 805
BseYI	CCCAGC	1 cut(s)	500
BsgI	GTGCAG	1 cut(s)	389
BshFI	GGCC	1 cut(s)	304
BshNI	GGYRCC	2 cut(s)	505, 528
BsiHKCI	CYCGRG	2 cut(s)	91, 287
BsiSI	CCGG	1 cut(s)	802
BslI	CCNNNNNNNGG	2 cut(s)	167, 444
BsmAI	GTCTC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	304
BsoBI	CYCGRG	2 cut(s)	91, 287
Bsp1286I	GDGCHC	1 cut(s)	508
Bsp143I	GATC	4 cut(s)	447, 512, 700, 717
Bsp1720I	GCTNAGC	1 cut(s)	764
BspACI	CCGC	4 cut(s)	305, 482, 629, 832
BspANI	GGCC	1 cut(s)	304
BspCNI	CTCAG	2 cut(s)	550, 687
BspLI	GGNNCC	3 cut(s)	476, 507, 530
BspMAI	CTGCAG	1 cut(s)	268
BspPI	GGATC	3 cut(s)	455, 520, 725
BspT107I	GGYRCC	2 cut(s)	505, 528
BsrDI	GCAATG	1 cut(s)	495
BsrI	ACTGG	1 cut(s)	673
BssECI	CCNNGG	1 cut(s)	802
BssMI	GATC	4 cut(s)	447, 512, 700, 717
BssNAI	GTATAC	1 cut(s)	790
Bst1107I	GTATAC	1 cut(s)	790
Bst2UI	CCWGG	2 cut(s)	445, 510
Bst4CI	ACNGT	4 cut(s)	99, 151, 533, 545
Bst6I	CTCTTC	2 cut(s)	33, 231
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstBAI	YACGTR	1 cut(s)	272
BstC8I	GCNNGC	2 cut(s)	120, 409
BstDEI	CTNAG	4 cut(s)	224, 558, 695, 764
BstF5I	GGATG	2 cut(s)	321, 584
BstKTI	GATC	4 cut(s)	450, 515, 703, 720
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	4 cut(s)	447, 512, 700, 717
BstMWI	GCNNNNNNNGC	4 cut(s)	115, 215, 272, 632
BstNI	CCWGG	2 cut(s)	445, 510
BstNSI	RCATGY	3 cut(s)	745, 796, 851
BstSCI	CCNGG	3 cut(s)	443, 508, 801
BstSFI	CTRYAG	1 cut(s)	264
BstSLI	GKGCMC	1 cut(s)	508
BstV1I	GCAGC	5 cut(s)	250, 278, 613, 667, 805
BstX2I	RGATCY	2 cut(s)	512, 717
BstYI	RGATCY	2 cut(s)	512, 717
BstZ17I	GTATAC	1 cut(s)	790
BsuRI	GGCC	1 cut(s)	304
BtsCI	GGATG	2 cut(s)	321, 584
BtsI	GCAGTG	1 cut(s)	438
BtsIMutI	CAGTG	3 cut(s)	438, 666, 765
Cac8I	GCNNGC	2 cut(s)	120, 409
Csp6I	GTAC	3 cut(s)	529, 574, 796
CviAII	CATG	7 cut(s)	65, 390, 589, 704, 742, 793, 848
CviJI	RGCY	8 cut(s)	5, 209, 218, 304, 431, 612, 680, 818
CviKI_1	RGCY	8 cut(s)	5, 209, 218, 304, 431, 612, 680, 818
CviQI	GTAC	3 cut(s)	529, 574, 796
DdeI	CTNAG	4 cut(s)	224, 558, 695, 764
DpnI	GATC	4 cut(s)	449, 514, 702, 719
DpnII	GATC	4 cut(s)	447, 512, 700, 717
EaeI	YGGCCR	1 cut(s)	302
Eam1104I	CTCTTC	2 cut(s)	33, 231
EarI	CTCTTC	2 cut(s)	33, 231
Eco57I	CTGAAG	1 cut(s)	54
Eco72I	CACGTG	1 cut(s)	272
Eco88I	CYCGRG	2 cut(s)	91, 287
EcoRII	CCWGG	2 cut(s)	443, 508
FaeI	CATG	7 cut(s)	68, 393, 592, 707, 745, 796, 851
FatI	CATG	7 cut(s)	64, 389, 588, 703, 741, 792, 847
FauI	CCCGC	1 cut(s)	825
FblI	GTMKAC	1 cut(s)	789
Fnu4HI	GCNGC	7 cut(s)	264, 267, 305, 627, 681, 819, 861
FokI	GGATG	2 cut(s)	308, 591
Fsp4HI	GCNGC	7 cut(s)	264, 267, 305, 627, 681, 819, 861
GluI	GCNGC	7 cut(s)	264, 267, 305, 627, 681, 819, 861
GsaI	CCCAGC	1 cut(s)	504
GsuI	CTGGAG	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	304
HapII	CCGG	1 cut(s)	802
Hin1II	CATG	7 cut(s)	68, 393, 592, 707, 745, 796, 851
HinfI	GANTC	3 cut(s)	61, 735, 755
HpaII	CCGG	1 cut(s)	802
HphI	GGTGA	4 cut(s)	93, 155, 467, 475
Hpy166II	GTNNAC	1 cut(s)	790
Hpy188I	TCNGA	2 cut(s)	559, 696
Hpy188III	TCNNGA	7 cut(s)	58, 93, 113, 287, 329, 418, 752
Hpy8I	GTNNAC	1 cut(s)	790
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	2 cut(s)	37, 452
HpyCH4III	ACNGT	4 cut(s)	99, 151, 533, 545
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	5 cut(s)	266, 338, 370, 618, 683
HpyF10VI	GCNNNNNNNGC	4 cut(s)	115, 215, 272, 632
HpyF3I	CTNAG	4 cut(s)	224, 558, 695, 764
HpySE526I	ACGT	1 cut(s)	271
Hsp92II	CATG	7 cut(s)	68, 393, 592, 707, 745, 796, 851
KpnI	GGTACC	1 cut(s)	532
Kzo9I	GATC	4 cut(s)	447, 512, 700, 717
LmnI	GCTCC	3 cut(s)	82, 640, 839
Lsp1109I	GCAGC	5 cut(s)	250, 278, 613, 667, 805
LweI	GCATC	3 cut(s)	250, 627, 777
MaeII	ACGT	1 cut(s)	271
MaeIII	GTNAC	3 cut(s)	20, 99, 433
MalI	GATC	4 cut(s)	449, 514, 702, 719
MboI	GATC	4 cut(s)	447, 512, 700, 717
MboII	GAAGA	6 cut(s)	47, 50, 248, 269, 640, 712
MfeI	CAATTG	1 cut(s)	684
MflI	RGATCY	2 cut(s)	512, 717
MhlI	GDGCHC	1 cut(s)	508
MluCI	AATT	6 cut(s)	130, 279, 298, 351, 399, 684
MslI	CAYNNNNRTG	1 cut(s)	431
MspI	CCGG	1 cut(s)	802
MspR9I	CCNGG	3 cut(s)	445, 510, 803
MunI	CAATTG	1 cut(s)	684
MvaI	CCWGG	2 cut(s)	445, 510
MwoI	GCNNNNNNNGC	4 cut(s)	115, 215, 272, 632
NciI	CCSGG	1 cut(s)	803
NdeII	GATC	4 cut(s)	447, 512, 700, 717
NlaIII	CATG	7 cut(s)	68, 393, 592, 707, 745, 796, 851
NlaIV	GGNNCC	3 cut(s)	476, 507, 530
NmuCI	GTSAC	2 cut(s)	99, 433
NspI	RCATGY	3 cut(s)	745, 796, 851
PaeR7I	CTCGAG	2 cut(s)	91, 287
PciI	ACATGT	2 cut(s)	792, 847
PfeI	GAWTC	3 cut(s)	61, 735, 755
PflMI	CCANNNNNTGG	1 cut(s)	444
PkrI	GCNGC	7 cut(s)	265, 268, 306, 628, 682, 820, 862
PmaCI	CACGTG	1 cut(s)	272
PmlI	CACGTG	1 cut(s)	272
Ppu21I	YACGTR	1 cut(s)	272
PscI	ACATGT	2 cut(s)	792, 847
PsiI	TTATAA	1 cut(s)	386
Psp6I	CCWGG	2 cut(s)	443, 508
PspCI	CACGTG	1 cut(s)	272
PspFI	CCCAGC	1 cut(s)	500
PspGI	CCWGG	2 cut(s)	443, 508
PspN4I	GGNNCC	3 cut(s)	476, 507, 530
PstI	CTGCAG	1 cut(s)	268
PsuI	RGATCY	2 cut(s)	512, 717
RsaI	GTAC	3 cut(s)	530, 575, 797
RsaNI	GTAC	3 cut(s)	529, 574, 796
RseI	CAYNNNNRTG	1 cut(s)	431
SatI	GCNGC	7 cut(s)	264, 267, 305, 627, 681, 819, 861
Sau3AI	GATC	4 cut(s)	447, 512, 700, 717
ScrFI	CCNGG	3 cut(s)	445, 510, 803
SduI	GDGCHC	1 cut(s)	508
SfaNI	GCATC	3 cut(s)	250, 627, 777
SfcI	CTRYAG	1 cut(s)	264
Sfr274I	CTCGAG	2 cut(s)	91, 287
SlaI	CTCGAG	2 cut(s)	91, 287
SmiMI	CAYNNNNRTG	1 cut(s)	431
SmlI	CTYRAG	2 cut(s)	91, 287
SmoI	CTYRAG	2 cut(s)	91, 287
Sse9I	AATT	6 cut(s)	130, 279, 298, 351, 399, 684
SsiI	CCGC	4 cut(s)	305, 482, 629, 832
StyD4I	CCNGG	3 cut(s)	443, 508, 801
TaaI	ACNGT	4 cut(s)	99, 151, 533, 545
TaiI	ACGT	1 cut(s)	274
TaqI	TCGA	5 cut(s)	10, 59, 92, 153, 288
TasI	AATT	6 cut(s)	130, 279, 298, 351, 399, 684
TatI	WGTACW	1 cut(s)	795
TauI	GCSGC	1 cut(s)	307
TfiI	GAWTC	3 cut(s)	61, 735, 755
TscAI	CASTG	3 cut(s)	445, 673, 765
TseFI	GTSAC	2 cut(s)	99, 433
TseI	GCWGC	6 cut(s)	263, 266, 626, 680, 818, 860
Tsp45I	GTSAC	2 cut(s)	99, 433
TspDTI	ATGAA	5 cut(s)	344, 357, 484, 577, 718
TspGWI	ACGGA	3 cut(s)	42, 265, 591
TspRI	CASTG	3 cut(s)	445, 673, 765
Van91I	CCANNNNNTGG	1 cut(s)	444
XceI	RCATGY	3 cut(s)	745, 796, 851
XhoI	CTCGAG	2 cut(s)	91, 287
XmiI	GTMKAC	1 cut(s)	789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.