Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003098

Physical Location & Seq

Genomic Coordinates Forward (+)

4130654 .. 4133571

Gene Structure 2918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG052300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGTTTTTCATGTTTCTGGTAATGTTGTCTCAGGTTTCTTTGAAGAGGAGGAGGTCAATCCGTTCTCGAATCATGGAAGCGTTGCTCCTGCCAAGAACTCCAGACTATCACCTCTGCCTCCAGAACGCGCTGGTTTCAATTATGGTATTGGTGAAACCGTTGATATACCTATTGATGGAAGTGGGGATTTGAAAAAGAGGGAGAGGGAACTCCAAGCTAAAGAAGCTGAACTGAGAAAGTGTGAAGAGATTGTAAAATGGAAAGAGGATGCTGGAGCACGAGCTGGAATTGTTCTGGAGGAAAAAAATTGGCCTCCTTTCTTTCCACTTATCCATCATGATATTGCAAACGAAATACCAAAACAAAGGGTGATGTATGTTGCATTTACAACATGGTTAGGAATTGTTGCTTGCCTATTCTGGAATATAATAGCTGTGACTACTGCCTGGATTAAGGGTGAAGGACAATCTCTCATTGGCATTCTGGCTGCAATTGATATTCTAAGTGATCATGCTTTGGTTAGGCAAGTATACATGTACGTCCCGGGAAGTGGTAAGGCTGCTAAAATGAAGCTTCATGGCAAGTTGGTGAGGGCAGCAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0097708 GO:0098657 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

201

Amino Acids

22.23

Weight (kDa)

6.6

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCAMP	PF04144	101 - 157	5.8e-17	SCAMP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11180 AT1G11180 AT1G11180 AT1G61250 AT1G61250 AT2G20840 AT2G20840 AT2G20840
fragaria_vesca	FvH4_3g04440
malus_domestica	MD05G1323100.v1.1 MD10G1300900.v1.1
prunus_persica	Prupe.4G039500_v2.0.a1 Prupe.4G039500_v2.0.a1
pyrus_communis	pycom05g29740 pycom10g25380
rosa_chinensis	RchiOBHm_Chr5g0006841 RchiOBHm_Chr5g0006891 RchiOBHm_Chr5g0007151 RchiOBHm_Chr5g0007321
rosa_laevigata	RLG00000031433 RLG00000031444
rosa_multiflora	Rmu_sc0001044.1_g000035 Rmu_sc0001838.1_g000001 Rmu_sc0003826.1_g000003
rosa_roxburghii	Rroxscaffold_1G00069210
rosa_rugosa	Rorug04G0424900
rosa_samantha	Rh5AG052600 Rh5AG053300 Rh5BG051500 Rh5BG052300 Rh5CG060200 Rh5CG060900 Rh5CG062300 Rh5DG050800
rosa_wichuraiana	Rw5G005140 Rw5G005200 Rw5G005510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	531
AccII	CGCG	1 cut(s)	129
AfaI	GTAC	1 cut(s)	539
AfiI	CCNNNNNNNGG	2 cut(s)	176, 551
AflIII	ACRYGT	1 cut(s)	534
AgsI	TTSAA	3 cut(s)	44, 139, 193
AjnI	CCWGG	1 cut(s)	446
AluBI	AGCT	5 cut(s)	218, 227, 284, 434, 574
AluI	AGCT	5 cut(s)	218, 227, 284, 434, 574
Alw21I	GWGCWC	1 cut(s)	280
Alw26I	GTCTC	1 cut(s)	34
Ama87I	CYCGRG	1 cut(s)	544
AoxI	GGCC	1 cut(s)	311
ApeKI	GCWGC	3 cut(s)	488, 560, 596
AspLEI	GCGC	1 cut(s)	131
AsuC2I	CCSGG	2 cut(s)	545, 546
AsuHPI	GGTGA	5 cut(s)	102, 164, 382, 470, 601
AvaI	CYCGRG	1 cut(s)	544
BauI	CACGAG	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	280
BbvI	GCAGC	2 cut(s)	475, 547
BccI	CCATC	2 cut(s)	170, 342
BciT130I	CCWGG	1 cut(s)	448
BclI	TGATCA	1 cut(s)	508
BcnI	CCSGG	2 cut(s)	545, 546
BcoDI	GTCTC	1 cut(s)	34
BisI	GCNGC	3 cut(s)	489, 561, 597
BlsI	GCNGC	3 cut(s)	490, 562, 598
Bme1390I	CCNGG	3 cut(s)	448, 545, 546
BmeT110I	CYCGRG	1 cut(s)	544
BmrFI	CCNGG	3 cut(s)	448, 545, 546
BmsI	GCATC	1 cut(s)	259
BpmI	CTGGAG	4 cut(s)	85, 105, 294, 317
BpuMI	CCSGG	2 cut(s)	545, 546
BsaJI	CCNNGG	1 cut(s)	544
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 551
BseBI	CCWGG	1 cut(s)	448
BseDI	CCNNGG	1 cut(s)	544
BseGI	GGATG	1 cut(s)	274
BseLI	CCNNNNNNNGG	2 cut(s)	176, 551
BseMII	CTCAG	2 cut(s)	45, 224
BseRI	GAGGAG	2 cut(s)	62, 65
BseXI	GCAGC	2 cut(s)	475, 547
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	1 cut(s)	313
BsiHKAI	GWGCWC	1 cut(s)	280
BsiHKCI	CYCGRG	1 cut(s)	544
BsiSI	CCGG	1 cut(s)	545
BslFI	GGGAC	1 cut(s)	527
BslI	CCNNNNNNNGG	2 cut(s)	176, 551
BsmAI	GTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	527
BsmI	GAATGC	1 cut(s)	480
BsnI	GGCC	1 cut(s)	313
BsoBI	CYCGRG	1 cut(s)	544
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp143I	GATC	1 cut(s)	508
BspANI	GGCC	1 cut(s)	313
BspCNI	CTCAG	2 cut(s)	44, 225
BspFNI	CGCG	1 cut(s)	129
BspHI	TCATGA	1 cut(s)	337
BssECI	CCNNGG	1 cut(s)	544
BssMI	GATC	1 cut(s)	508
BssNAI	GTATAC	1 cut(s)	532
BssSI	CACGAG	1 cut(s)	279
Bst1107I	GTATAC	1 cut(s)	532
Bst2BI	CACGAG	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	448
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	2 cut(s)	39, 240
BstC8I	GCNNGC	1 cut(s)	412
BstDEI	CTNAG	3 cut(s)	31, 233, 503
BstF5I	GGATG	1 cut(s)	274
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	1 cut(s)	511
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	508
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	1 cut(s)	448
BstNSI	RCATGY	1 cut(s)	538
BstSCI	CCNGG	3 cut(s)	446, 543, 544
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	2 cut(s)	475, 547
BstZ17I	GTATAC	1 cut(s)	532
BsuRI	GGCC	1 cut(s)	313
BtsCI	GGATG	1 cut(s)	274
Cac8I	GCNNGC	1 cut(s)	412
CciI	TCATGA	1 cut(s)	337
CfoI	GCGC	1 cut(s)	131
Cfr9I	CCCGGG	1 cut(s)	544
Csp6I	GTAC	1 cut(s)	538
CviAII	CATG	7 cut(s)	11, 74, 338, 393, 512, 535, 578
CviJI	RGCY	8 cut(s)	218, 227, 284, 313, 434, 488, 560, 574
CviKI_1	RGCY	8 cut(s)	218, 227, 284, 313, 434, 488, 560, 574
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	3 cut(s)	31, 233, 503
DpnI	GATC	1 cut(s)	510
DpnII	GATC	1 cut(s)	508
Eam1104I	CTCTTC	2 cut(s)	39, 240
EarI	CTCTTC	2 cut(s)	39, 240
Eco88I	CYCGRG	1 cut(s)	544
EcoRII	CCWGG	1 cut(s)	446
FaeI	CATG	7 cut(s)	14, 77, 341, 396, 515, 538, 581
FaqI	GGGAC	1 cut(s)	527
FatI	CATG	7 cut(s)	10, 73, 337, 392, 511, 534, 577
FbaI	TGATCA	1 cut(s)	508
FblI	GTMKAC	1 cut(s)	531
Fnu4HI	GCNGC	3 cut(s)	489, 561, 597
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	3 cut(s)	489, 561, 597
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	3 cut(s)	489, 561, 597
GsuI	CTGGAG	4 cut(s)	85, 105, 294, 317
HaeIII	GGCC	1 cut(s)	313
HapII	CCGG	1 cut(s)	545
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	7 cut(s)	14, 77, 341, 396, 515, 538, 581
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HindIII	AAGCTT	1 cut(s)	572
HinfI	GANTC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	545
HphI	GGTGA	5 cut(s)	102, 164, 382, 470, 601
Hpy166II	GTNNAC	1 cut(s)	532
Hpy188III	TCNNGA	6 cut(s)	67, 102, 122, 296, 338, 421
Hpy8I	GTNNAC	1 cut(s)	532
HpyAV	CCTTC	1 cut(s)	455
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	1 cut(s)	540
HpyCH4V	TGCA	3 cut(s)	347, 383, 491
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	3 cut(s)	31, 233, 503
HpySE526I	ACGT	1 cut(s)	540
Hsp92II	CATG	7 cut(s)	14, 77, 341, 396, 515, 538, 581
HspAI	GCGC	1 cut(s)	129
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	1 cut(s)	508
LmnI	GCTCC	2 cut(s)	91, 275
Lsp1109I	GCAGC	2 cut(s)	475, 547
LweI	GCATC	1 cut(s)	259
MaeII	ACGT	1 cut(s)	540
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	1 cut(s)	510
MboI	GATC	1 cut(s)	508
MboII	GAAGA	2 cut(s)	56, 257
MfeI	CAATTG	1 cut(s)	492
MhlI	GDGCHC	1 cut(s)	280
MluCI	AATT	5 cut(s)	139, 288, 307, 402, 492
MseI	TTAA	1 cut(s)	453
MspI	CCGG	1 cut(s)	545
MspR9I	CCNGG	3 cut(s)	448, 545, 546
MunI	CAATTG	1 cut(s)	492
Mva1269I	GAATGC	1 cut(s)	480
MvaI	CCWGG	1 cut(s)	448
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	224
NciI	CCSGG	2 cut(s)	545, 546
NdeII	GATC	1 cut(s)	508
NlaIII	CATG	7 cut(s)	14, 77, 341, 396, 515, 538, 581
NmuCI	GTSAC	1 cut(s)	436
NspI	RCATGY	1 cut(s)	538
PagI	TCATGA	1 cut(s)	337
PciI	ACATGT	1 cut(s)	534
PctI	GAATGC	1 cut(s)	480
PfeI	GAWTC	1 cut(s)	70
PkrI	GCNGC	3 cut(s)	490, 562, 598
PscI	ACATGT	1 cut(s)	534
Psp6I	CCWGG	1 cut(s)	446
PspGI	CCWGG	1 cut(s)	446
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	3 cut(s)	489, 561, 597
Sau3AI	GATC	1 cut(s)	508
ScrFI	CCNGG	3 cut(s)	448, 545, 546
SduI	GDGCHC	1 cut(s)	280
SfaNI	GCATC	1 cut(s)	259
SmaI	CCCGGG	1 cut(s)	546
Sse9I	AATT	5 cut(s)	139, 288, 307, 402, 492
StyD4I	CCNGG	3 cut(s)	446, 543, 544
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	1 cut(s)	543
TaqI	TCGA	1 cut(s)	68
TasI	AATT	5 cut(s)	139, 288, 307, 402, 492
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	3 cut(s)	488, 560, 596
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	2 cut(s)	566, 584
TspGWI	ACGGA	1 cut(s)	51
TspMI	CCCGGG	1 cut(s)	544
XceI	RCATGY	1 cut(s)	538
XmaI	CCCGGG	1 cut(s)	544
XmiI	GTMKAC	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.