RLG00000031444

Secretory carrier-associated membrane protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
5200531 .. 5204729
4199 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031444

Sequence Viewer

Length: 1119 bp
ATGCCGAGAATTTCCTTTGGGTCCGCGATTGGTGTTCTGGGAGGGGCCGGCTTGTGCATCTCTCTCTTCTATTCGGCTTCCATTCGGGCCAAGGCGGTGCGCCTCGATCGAGATCGATTTCTGCACGAGAAAAAGCAGGCCGAGCTGGCGGAGATGCGAGCCGTGAGGGCTGAGGAGCGGGCGGTCAGGGAGGAGGAACGGGCCGTCAGGGCAGAGGAGCGGGCCGTGAAGGCTGAGGGAAGAGCCGTCAAGGCTGAGGAGAGGGCCGAGAGGACAGATAGAAGAAGTAGAACTGATGGGCATTTCTTTGAAGAGGAGGAAGTCAATCCGTTCTCAATGAGTGTCCTTTTGCAATTTTCTGGTTCTGGTTGTGATGTATTTGGATGCGATGATTTGAATCATGGAAGCGTTGCTCCTGCCAAGAACTCCAGACTACCACCTCTGCCTCCAGAACGTGCTGGTTTCAATTATGGTATTGGTGAAACCGTTGATATACCTATTGATGGAAGTGGGTGTTTTTCTAATTTTAGTTATTATTATTTGATTTACGATTTGAAAAAGAGGGAGAGGGAACTCCAAGTTAAAGAATATGAACTGAGAAAGTGTGAAGAGATTGTAAAACGGAAGGAGGATGCTGCAGCACGAGCTGGAATTGTTCTGGAGGAAAAAAATTGGCCTCCTTTCTTTCCACTTATCCATCATGATATTGCAAATGCAATACCAATTCATTTACAAAGGGTGATGTATGTTGCATTTACAACATGGTTAGGAATTGTTGCTTGCCTATTCTGGAATATAATAGCTGTGACTACTGCCTGGATTAAGGGTGAAGGGGTGAAAATTTGGTTCCTTGCGGTTTTATATTTCATTGCTGGGGCCCCTGGATCTTATGTGTTGTGGTACCGTCCTCTTTGCCTTGGATGGTTTTTCATGTTTCTGATCCACATTGGCTTCTGCATCTTTGCTGCGGTTGCTCCCCCTATAATGTTCAAAGGAAAATCCCTCATTGGCATTCTGGCTGCAATTGATGTTCGAAGTGATCATGCTTTGGTTAGGCAAGTATACATGTACGTCCCGGGAAGTGGTAAAGCTGCTAAAATGAAGCGTAAGGGAGCATGA

Protein Analysis

373

Amino Acids

41.88

Weight (kDa)

8.9

Isoelectric Point (pI)

46.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCAMP PF04144 222 - 356 2.6e-33 SCAMP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 900
AccB1I GGYRCC 1 cut(s) 900
AccBSI CCGCTC 2 cut(s) 178, 220
AccI GTMKAC 1 cut(s) 1062
AccII CGCG 1 cut(s) 26
AciI CCGC 8 cut(s) 24, 95, 149, 178, 182, 220, 854, 968
AclWI GGATC 2 cut(s) 892, 934
AcsI RAATTY 2 cut(s) 9, 840
AfaI GTAC 2 cut(s) 902, 1070
AfiI CCNNNNNNNGG 2 cut(s) 503, 1082
AflIII ACRYGT 1 cut(s) 1065
AgsI TTSAA 5 cut(s) 311, 397, 466, 556, 991
AjnI CCWGG 2 cut(s) 815, 880
AluBI AGCT 4 cut(s) 145, 647, 803, 1091
AluI AGCT 4 cut(s) 145, 647, 803, 1091
AlwI GGATC 2 cut(s) 892, 934
Ama87I CYCGRG 1 cut(s) 1075
AoxI GGCC 8 cut(s) 45, 87, 138, 201, 222, 264, 674, 876
ApaI GGGCCC 1 cut(s) 880
ApeKI GCWGC 5 cut(s) 635, 638, 965, 1019, 1091
ApoI RAATTY 2 cut(s) 9, 840
Asp718I GGTACC 1 cut(s) 900
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 8 cut(s) 21, 45, 87, 201, 222, 264, 876, 877
AsuC2I CCSGG 2 cut(s) 1076, 1077
AsuHPI GGTGA 4 cut(s) 491, 751, 839, 847
AsuII TTCGAA 1 cut(s) 1033
AvaI CYCGRG 1 cut(s) 1075
AvaII GGWCC 1 cut(s) 21
BaeGI GKGCMC 1 cut(s) 880
BanI GGYRCC 1 cut(s) 900
BanII GRGCYC 1 cut(s) 880
BauI CACGAG 2 cut(s) 125, 642
BbvCI CCTCAGC 3 cut(s) 171, 234, 255
BbvI GCAGC 5 cut(s) 622, 650, 952, 1006, 1078
BccI CCATC 4 cut(s) 290, 497, 705, 915
BceAI ACGGC 4 cut(s) 146, 188, 209, 230
BciT130I CCWGG 2 cut(s) 817, 882
BclI TGATCA 1 cut(s) 1039
BcnI CCSGG 2 cut(s) 1076, 1077
BfmI CTRYAG 1 cut(s) 636
BglI GCCNNNNNGGC 5 cut(s) 146, 167, 209, 230, 251
BisI GCNGC 5 cut(s) 636, 639, 966, 1020, 1092
BlsI GCNGC 5 cut(s) 637, 640, 967, 1021, 1093
Bme1390I CCNGG 4 cut(s) 817, 882, 1076, 1077
Bme18I GGWCC 1 cut(s) 21
BmeT110I CYCGRG 1 cut(s) 1075
BmgT120I GGNCC 8 cut(s) 21, 45, 87, 201, 222, 264, 876, 877
BmiI GGNNCC 7 cut(s) 22, 46, 848, 877, 878, 879, 902
BmrFI CCNGG 4 cut(s) 817, 882, 1076, 1077
BmsI GCATC 5 cut(s) 66, 144, 374, 622, 966
BpmI CTGGAG 3 cut(s) 412, 432, 680
Bpu10I CCTNAGC 3 cut(s) 171, 234, 255
Bpu14I TTCGAA 1 cut(s) 1033
BpuMI CCSGG 2 cut(s) 1076, 1077
Bsa29I ATCGAT 1 cut(s) 115
BsaBI GATNNNNATC 2 cut(s) 111, 396
BsaJI CCNNGG 4 cut(s) 90, 880, 916, 1075
Bsc4I CCNNNNNNNGG 2 cut(s) 503, 1082
Bse118I RCCGGY 1 cut(s) 47
Bse3DI GCAATG 1 cut(s) 867
Bse8I GATNNNNATC 2 cut(s) 111, 396
BseBI CCWGG 2 cut(s) 817, 882
BseCI ATCGAT 1 cut(s) 115
BseDI CCNNGG 4 cut(s) 90, 880, 916, 1075
BseGI GGATG 3 cut(s) 389, 637, 926
BseJI GATNNNNATC 2 cut(s) 111, 396
BseLI CCNNNNNNNGG 2 cut(s) 503, 1082
BseMI GCAATG 1 cut(s) 867
BseMII CTCAG 4 cut(s) 162, 225, 246, 587
BseRI GAGGAG 5 cut(s) 188, 206, 230, 272, 329
BseSI GKGCMC 1 cut(s) 880
BseXI GCAGC 5 cut(s) 622, 650, 952, 1006, 1078
BseYI CCCAGC 1 cut(s) 872
BsgI GTGCAG 1 cut(s) 107
Bsh1236I CGCG 1 cut(s) 26
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 8 cut(s) 47, 89, 140, 203, 224, 266, 676, 878
BshNI GGYRCC 1 cut(s) 900
BshVI ATCGAT 1 cut(s) 115
BsiEI CGRYCG 1 cut(s) 109
BsiHKCI CYCGRG 1 cut(s) 1075
BsiSI CCGG 2 cut(s) 48, 1076
BslFI GGGAC 1 cut(s) 1058
BslI CCNNNNNNNGG 2 cut(s) 503, 1082
BsmFI GGGAC 1 cut(s) 1058
BsmI GAATGC 1 cut(s) 1011
BsnI GGCC 8 cut(s) 47, 89, 140, 203, 224, 266, 676, 878
BsoBI CYCGRG 1 cut(s) 1075
Bsp119I TTCGAA 1 cut(s) 1033
Bsp120I GGGCCC 1 cut(s) 876
Bsp1286I GDGCHC 1 cut(s) 880
Bsp143I GATC 5 cut(s) 106, 112, 884, 939, 1039
BspACI CCGC 8 cut(s) 24, 95, 149, 178, 182, 220, 854, 968
BspANI GGCC 8 cut(s) 47, 89, 140, 203, 224, 266, 676, 878
BspCNI CTCAG 4 cut(s) 163, 226, 247, 588
BspDI ATCGAT 1 cut(s) 115
BspFNI CGCG 1 cut(s) 26
BspHI TCATGA 1 cut(s) 700
BspLI GGNNCC 7 cut(s) 22, 46, 848, 877, 878, 879, 902
BspMAI CTGCAG 1 cut(s) 640
BspPI GGATC 2 cut(s) 892, 934
BspQI GCTCTTC 1 cut(s) 235
BspT104I TTCGAA 1 cut(s) 1033
BspT107I GGYRCC 1 cut(s) 900
BsrBI CCGCTC 2 cut(s) 178, 220
BsrDI GCAATG 1 cut(s) 867
BsrFI RCCGGY 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 4 cut(s) 90, 880, 916, 1075
BssMI GATC 5 cut(s) 106, 112, 884, 939, 1039
BssNAI GTATAC 1 cut(s) 1063
BssSI CACGAG 2 cut(s) 125, 642
BssT1I CCWWGG 2 cut(s) 90, 916
Bst1107I GTATAC 1 cut(s) 1063
Bst2BI CACGAG 2 cut(s) 125, 642
Bst2UI CCWGG 2 cut(s) 817, 882
Bst4CI ACNGT 2 cut(s) 487, 905
Bst6I CTCTTC 4 cut(s) 71, 235, 306, 603
BstBI TTCGAA 1 cut(s) 1033
BstC8I GCNNGC 7 cut(s) 49, 138, 147, 159, 180, 222, 781
BstDEI CTNAG 4 cut(s) 171, 234, 255, 596
BstF5I GGATG 3 cut(s) 389, 637, 926
BstFNI CGCG 1 cut(s) 26
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 5 cut(s) 109, 115, 887, 942, 1042
BstMBI GATC 5 cut(s) 106, 112, 884, 939, 1039
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 8 cut(s) 142, 146, 167, 209, 230, 251, 644, 971
BstNI CCWGG 2 cut(s) 817, 882
BstNSI RCATGY 1 cut(s) 1069
BstSCI CCNGG 4 cut(s) 815, 880, 1074, 1075
BstSFI CTRYAG 1 cut(s) 636
BstSLI GKGCMC 1 cut(s) 880
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 5 cut(s) 622, 650, 952, 1006, 1078
BstX2I RGATCY 1 cut(s) 884
BstYI RGATCY 1 cut(s) 884
BstZ17I GTATAC 1 cut(s) 1063
Bsu15I ATCGAT 1 cut(s) 115
BsuRI GGCC 8 cut(s) 47, 89, 140, 203, 224, 266, 676, 878
BsuTUI ATCGAT 1 cut(s) 115
BtgZI GCGATG 1 cut(s) 402
BtsCI GGATG 3 cut(s) 389, 637, 926
Cac8I GCNNGC 7 cut(s) 49, 138, 147, 159, 180, 222, 781
CciI TCATGA 1 cut(s) 700
CfoI GCGC 1 cut(s) 102
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 8 cut(s) 21, 45, 87, 201, 222, 264, 876, 877
Cfr9I CCCGGG 1 cut(s) 1075
ClaI ATCGAT 1 cut(s) 115
Csp6I GTAC 2 cut(s) 901, 1069
CviAII CATG 7 cut(s) 401, 701, 762, 931, 1043, 1066, 1116
CviQI GTAC 2 cut(s) 901, 1069
DdeI CTNAG 4 cut(s) 171, 234, 255, 596
DpnI GATC 5 cut(s) 108, 114, 886, 941, 1041
DpnII GATC 5 cut(s) 106, 112, 884, 939, 1039
Eam1104I CTCTTC 4 cut(s) 71, 235, 306, 603
EarI CTCTTC 4 cut(s) 71, 235, 306, 603
EciI GGCGGA 1 cut(s) 164
Eco130I CCWWGG 2 cut(s) 90, 916
Eco24I GRGCYC 1 cut(s) 880
Eco47I GGWCC 1 cut(s) 21
Eco88I CYCGRG 1 cut(s) 1075
EcoO109I RGGNCCY 2 cut(s) 876, 877
EcoRII CCWGG 2 cut(s) 815, 880
EcoT14I CCWWGG 2 cut(s) 90, 916
EcoT38I GRGCYC 1 cut(s) 880
ErhI CCWWGG 2 cut(s) 90, 916
FaeI CATG 7 cut(s) 404, 704, 765, 934, 1046, 1069, 1119
FaqI GGGAC 1 cut(s) 1058
FatI CATG 7 cut(s) 400, 700, 761, 930, 1042, 1065, 1115
FauI CCCGC 2 cut(s) 171, 213
FbaI TGATCA 1 cut(s) 1039
FblI GTMKAC 1 cut(s) 1062
Fnu4HI GCNGC 5 cut(s) 636, 639, 966, 1020, 1092
FokI GGATG 3 cut(s) 396, 644, 933
FriOI GRGCYC 1 cut(s) 880
Fsp4HI GCNGC 5 cut(s) 636, 639, 966, 1020, 1092
GlaI GCGC 1 cut(s) 101
GluI GCNGC 5 cut(s) 636, 639, 966, 1020, 1092
GsaI CCCAGC 1 cut(s) 876
GsuI CTGGAG 3 cut(s) 412, 432, 680
HaeIII GGCC 8 cut(s) 47, 89, 140, 203, 224, 266, 676, 878
HapII CCGG 2 cut(s) 48, 1076
HhaI GCGC 1 cut(s) 102
Hin1II CATG 7 cut(s) 404, 704, 765, 934, 1046, 1069, 1119
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HinfI GANTC 1 cut(s) 397
HpaII CCGG 2 cut(s) 48, 1076
HphI GGTGA 4 cut(s) 491, 751, 839, 847
Hpy166II GTNNAC 1 cut(s) 1063
Hpy188I TCNGA 1 cut(s) 939
Hpy188III TCNNGA 6 cut(s) 110, 429, 449, 659, 701, 790
Hpy8I GTNNAC 1 cut(s) 1063
HpyAV CCTTC 3 cut(s) 223, 619, 824
HpyCH4III ACNGT 2 cut(s) 487, 905
HpyCH4IV ACGT 2 cut(s) 454, 1071
HpyCH4V TGCA 9 cut(s) 57, 124, 352, 638, 710, 716, 752, 957, 1022
HpyF10VI GCNNNNNNNGC 8 cut(s) 142, 146, 167, 209, 230, 251, 644, 971
HpyF3I CTNAG 4 cut(s) 171, 234, 255, 596
HpySE526I ACGT 2 cut(s) 454, 1071
Hsp92II CATG 7 cut(s) 404, 704, 765, 934, 1046, 1069, 1119
HspAI GCGC 1 cut(s) 100
KpnI GGTACC 1 cut(s) 904
KroI GCCGGC 1 cut(s) 47
KroNI GCCGGC 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 1039
Kzo9I GATC 5 cut(s) 106, 112, 884, 939, 1039
LguI GCTCTTC 1 cut(s) 235
LmnI GCTCC 5 cut(s) 175, 217, 418, 979, 1112
Lsp1109I GCAGC 5 cut(s) 622, 650, 952, 1006, 1078
LweI GCATC 5 cut(s) 66, 144, 374, 622, 966
MaeII ACGT 2 cut(s) 454, 1071
MaeIII GTNAC 1 cut(s) 805
MalI GATC 5 cut(s) 108, 114, 886, 941, 1041
MbiI CCGCTC 2 cut(s) 178, 220
MboI GATC 5 cut(s) 106, 112, 884, 939, 1039
MboII GAAGA 5 cut(s) 58, 252, 294, 323, 620
MfeI CAATTG 1 cut(s) 1023
MflI RGATCY 1 cut(s) 884
MhlI GDGCHC 1 cut(s) 880
MroNI GCCGGC 1 cut(s) 47
MseI TTAA 2 cut(s) 582, 822
MspI CCGG 2 cut(s) 48, 1076
MspR9I CCNGG 4 cut(s) 817, 882, 1076, 1077
MunI CAATTG 1 cut(s) 1023
Mva1269I GAATGC 1 cut(s) 1011
MvaI CCWGG 2 cut(s) 817, 882
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 8 cut(s) 142, 146, 167, 209, 230, 251, 644, 971
NaeI GCCGGC 1 cut(s) 49
NciI CCSGG 2 cut(s) 1076, 1077
NdeII GATC 5 cut(s) 106, 112, 884, 939, 1039
NgoMIV GCCGGC 1 cut(s) 47
NlaIII CATG 7 cut(s) 404, 704, 765, 934, 1046, 1069, 1119
NlaIV GGNNCC 7 cut(s) 22, 46, 848, 877, 878, 879, 902
NmeAIII GCCGAG 3 cut(s) 30, 166, 292
NmuCI GTSAC 1 cut(s) 805
NspI RCATGY 1 cut(s) 1069
NspV TTCGAA 1 cut(s) 1033
PagI TCATGA 1 cut(s) 700
PciI ACATGT 1 cut(s) 1065
PciSI GCTCTTC 1 cut(s) 235
PctI GAATGC 1 cut(s) 1011
PdiI GCCGGC 1 cut(s) 49
PfeI GAWTC 1 cut(s) 397
PkrI GCNGC 5 cut(s) 637, 640, 967, 1021, 1093
Ple19I CGATCG 1 cut(s) 109
PscI ACATGT 1 cut(s) 1065
Psp6I CCWGG 2 cut(s) 815, 880
PspFI CCCAGC 1 cut(s) 872
PspGI CCWGG 2 cut(s) 815, 880
PspN4I GGNNCC 7 cut(s) 22, 46, 848, 877, 878, 879, 902
PspOMI GGGCCC 1 cut(s) 876
PspPI GGNCC 8 cut(s) 21, 45, 87, 201, 222, 264, 876, 877
PstI CTGCAG 1 cut(s) 640
PsuI RGATCY 1 cut(s) 884
PvuI CGATCG 1 cut(s) 109
RsaI GTAC 2 cut(s) 902, 1070
RsaNI GTAC 2 cut(s) 901, 1069
SapI GCTCTTC 1 cut(s) 235
SaqAI TTAA 2 cut(s) 582, 822
SatI GCNGC 5 cut(s) 636, 639, 966, 1020, 1092
Sau3AI GATC 5 cut(s) 106, 112, 884, 939, 1039
Sau96I GGNCC 8 cut(s) 21, 45, 87, 201, 222, 264, 876, 877
ScrFI CCNGG 4 cut(s) 817, 882, 1076, 1077
SduI GDGCHC 1 cut(s) 880
SetI ASST 8 cut(s) 147, 442, 457, 499, 649, 805, 1074, 1093
SfaNI GCATC 5 cut(s) 66, 144, 374, 622, 966
SfcI CTRYAG 1 cut(s) 636
SfuI TTCGAA 1 cut(s) 1033
SinI GGWCC 1 cut(s) 21
SmaI CCCGGG 1 cut(s) 1077
SsiI CCGC 8 cut(s) 24, 95, 149, 178, 182, 220, 854, 968
StyD4I CCNGG 4 cut(s) 815, 880, 1074, 1075
StyI CCWWGG 2 cut(s) 90, 916
TaaI ACNGT 2 cut(s) 487, 905
TaiI ACGT 2 cut(s) 457, 1074
TaqI TCGA 4 cut(s) 105, 109, 115, 1033
TfiI GAWTC 1 cut(s) 397
Tru1I TTAA 2 cut(s) 582, 822
Tru9I TTAA 2 cut(s) 582, 822
TseFI GTSAC 1 cut(s) 805
TseI GCWGC 5 cut(s) 635, 638, 965, 1019, 1091
Tsp45I GTSAC 1 cut(s) 805
TspDTI ATGAA 5 cut(s) 606, 716, 856, 919, 1115
TspGWI ACGGA 2 cut(s) 318, 637
TspMI CCCGGG 1 cut(s) 1075
VpaK11BI GGWCC 1 cut(s) 21
XapI RAATTY 2 cut(s) 9, 840
XceI RCATGY 1 cut(s) 1069
XmaI CCCGGG 1 cut(s) 1075
XmiI GTMKAC 1 cut(s) 1062
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.