Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003826.1

Orthogroup ID

OG0003098

Physical Location & Seq

Genomic Coordinates Reverse (-)

24404 .. 28190

Gene Structure 3787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003826.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

atgcctagaatttcctttgggtccgggattggtgttctgggaggggccggcttgtgcatctctctcttctattcagcttcgattcaggccaaggcggtgcgcctcgatcgagttcgatttctgcgcgagaaaaagcaggccgagctggcggagatgcgagccgtcagggcagaggagcgggcggtcagggaggaggaacgggccgtcagggcagaggagagggcggtcagggaggaggaacgggccgtcagggcagaggagagggcggtcagggaggaggaacgggccgtcagggcagaggagagggcggtcagggaggaggaacgggccgtcagggcagaggagagggcggtcagggaggaggaacgggccgtcagggcagaggagagggcgatcagggaggaggaacgggccgtcagggcagaggagcgggctgagggaagagccgtcaatactgaggagagggccgagaggacagacagaagaagtagaaccgatgggtctgagagtgctttgaagtacggatggtttttcatgtttctggtaatgttgtctcagatttctttgaagaggaggaagtcaatccgttctcgaatcatggaagcgttgctcctgccaagaactccagactaccacctctgcctccagaacatgctggtttcaattatggatttgaaaaagagggagagggaactccaagctaaagaatctgaactgagaaagcgtgaagagaatgtaaaacagaaagaggatgctgcagcacgagctggaattgttctggaggaaaaaaattggcctcctttctttccacttatccataatgatattgcaaacgaaataccaattcatttacaaagggtgatgtatgttgcatttacaacatggttaggaattgttgcttgcctattctggaatataatagctgtgactactgcctggattaagagtgaaggggtgaaaatttggttccttgcggttatatatttcattgctggggcccctggatcttatgtgttgtggtaccgtcctctttgccgtgtgttcaggtcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0097708 GO:0098657 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

350

Amino Acids

40.81

Weight (kDa)

9.36

Isoelectric Point (pI)

58.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11180 AT1G11180 AT1G11180 AT1G61250 AT1G61250 AT2G20840 AT2G20840 AT2G20840
fragaria_vesca	FvH4_3g04440
malus_domestica	MD05G1323100.v1.1 MD10G1300900.v1.1
prunus_persica	Prupe.4G039500_v2.0.a1 Prupe.4G039500_v2.0.a1
pyrus_communis	pycom05g29740 pycom10g25380
rosa_chinensis	RchiOBHm_Chr5g0006841 RchiOBHm_Chr5g0006891 RchiOBHm_Chr5g0007151 RchiOBHm_Chr5g0007321
rosa_laevigata	RLG00000031433 RLG00000031444
rosa_multiflora	Rmu_sc0001044.1_g000035 Rmu_sc0001838.1_g000001 Rmu_sc0003826.1_g000003
rosa_roxburghii	Rroxscaffold_1G00069210
rosa_rugosa	Rorug04G0424900
rosa_samantha	Rh5AG052600 Rh5AG053300 Rh5BG051500 Rh5BG052300 Rh5CG060200 Rh5CG060900 Rh5CG062300 Rh5DG050800
rosa_wichuraiana	Rw5G005140 Rw5G005200 Rw5G005510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1020
AccB1I	GGYRCC	1 cut(s)	1020
AccBSI	CCGCTC	2 cut(s)	178, 430
AccII	CGCG	1 cut(s)	126
AclWI	GGATC	1 cut(s)	1012
AcsI	RAATTY	2 cut(s)	9, 960
AfaI	GTAC	2 cut(s)	521, 1022
AgsI	TTSAA	4 cut(s)	517, 568, 663, 676
AjnI	CCWGG	2 cut(s)	935, 1000
AluBI	AGCT	5 cut(s)	77, 145, 701, 767, 923
AluI	AGCT	5 cut(s)	77, 145, 701, 767, 923
Alw26I	GTCTC	1 cut(s)	558
AlwI	GGATC	1 cut(s)	1012
ApaI	GGGCCC	1 cut(s)	1000
ApeKI	GCWGC	2 cut(s)	755, 758
ApoI	RAATTY	2 cut(s)	9, 960
Asp718I	GGTACC	1 cut(s)	1020
AspLEI	GCGC	2 cut(s)	102, 126
AsuC2I	CCSGG	1 cut(s)	25
AsuHPI	GGTGA	2 cut(s)	871, 967
AvaII	GGWCC	1 cut(s)	21
BaeGI	GKGCMC	1 cut(s)	1000
BanI	GGYRCC	1 cut(s)	1020
BanII	GRGCYC	1 cut(s)	1000
BauI	CACGAG	1 cut(s)	762
BbvCI	CCTCAGC	1 cut(s)	435
BbvI	GCAGC	2 cut(s)	742, 770
BccI	CCATC	2 cut(s)	491, 519
BceAI	ACGGC	9 cut(s)	146, 188, 230, 272, 314, 356, 398, 431, 1020
BciT130I	CCWGG	2 cut(s)	937, 1002
BcnI	CCSGG	1 cut(s)	25
BcoDI	GTCTC	1 cut(s)	558
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	756
BglI	GCCNNNNNGGC	8 cut(s)	146, 167, 209, 251, 293, 335, 377, 419
BisI	GCNGC	2 cut(s)	756, 759
BlsI	GCNGC	2 cut(s)	757, 760
Bme1390I	CCNGG	3 cut(s)	25, 937, 1002
Bme18I	GGWCC	1 cut(s)	21
BmiI	GGNNCC	7 cut(s)	22, 46, 968, 997, 998, 999, 1022
BmrFI	CCNGG	3 cut(s)	25, 937, 1002
BmsI	GCATC	3 cut(s)	66, 144, 742
BpmI	CTGGAG	3 cut(s)	609, 629, 800
Bpu10I	CCTNAGC	1 cut(s)	435
BpuMI	CCSGG	1 cut(s)	25
BsaJI	CCNNGG	2 cut(s)	90, 1000
Bse118I	RCCGGY	1 cut(s)	47
Bse3DI	GCAATG	1 cut(s)	987
BseBI	CCWGG	2 cut(s)	937, 1002
BseDI	CCNNGG	2 cut(s)	90, 1000
BseGI	GGATG	2 cut(s)	530, 757
BseMI	GCAATG	1 cut(s)	987
BseMII	CTCAG	5 cut(s)	426, 447, 495, 569, 707
BseSI	GKGCMC	1 cut(s)	1000
BseXI	GCAGC	2 cut(s)	742, 770
BseYI	CCCAGC	1 cut(s)	992
Bsh1236I	CGCG	1 cut(s)	126
Bsh1285I	CGRYCG	1 cut(s)	109
BshNI	GGYRCC	1 cut(s)	1020
BsiEI	CGRYCG	1 cut(s)	109
BsiSI	CCGG	2 cut(s)	24, 48
BsmAI	GTCTC	1 cut(s)	558
Bsp120I	GGGCCC	1 cut(s)	996
Bsp1286I	GDGCHC	1 cut(s)	1000
Bsp143I	GATC	3 cut(s)	106, 393, 1004
BspCNI	CTCAG	5 cut(s)	427, 448, 496, 568, 708
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	7 cut(s)	22, 46, 968, 997, 998, 999, 1022
BspMAI	CTGCAG	1 cut(s)	760
BspPI	GGATC	1 cut(s)	1012
BspQI	GCTCTTC	1 cut(s)	436
BspT107I	GGYRCC	1 cut(s)	1020
BsrBI	CCGCTC	2 cut(s)	178, 430
BsrDI	GCAATG	1 cut(s)	987
BsrFI	RCCGGY	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	2 cut(s)	90, 1000
BssMI	GATC	3 cut(s)	106, 393, 1004
BssSI	CACGAG	1 cut(s)	762
BssT1I	CCWWGG	1 cut(s)	90
Bst2BI	CACGAG	1 cut(s)	762
Bst2UI	CCWGG	2 cut(s)	937, 1002
Bst4CI	ACNGT	1 cut(s)	1025
Bst6I	CTCTTC	4 cut(s)	71, 436, 563, 723
BstC8I	GCNNGC	7 cut(s)	49, 138, 147, 159, 180, 432, 901
BstDEI	CTNAG	6 cut(s)	435, 456, 504, 555, 716, 1050
BstF5I	GGATG	2 cut(s)	530, 757
BstFNI	CGCG	1 cut(s)	126
BstHHI	GCGC	2 cut(s)	102, 126
BstKTI	GATC	3 cut(s)	109, 396, 1007
BstMAI	GTCTC	1 cut(s)	558
BstMBI	GATC	3 cut(s)	106, 393, 1004
BstMCI	CGRYCG	1 cut(s)	109
BstNI	CCWGG	2 cut(s)	937, 1002
BstNSI	RCATGY	1 cut(s)	655
BstSCI	CCNGG	3 cut(s)	23, 935, 1000
BstSFI	CTRYAG	1 cut(s)	756
BstSLI	GKGCMC	1 cut(s)	1000
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	742, 770
BstX2I	RGATCY	1 cut(s)	1004
BstYI	RGATCY	1 cut(s)	1004
BtsCI	GGATG	2 cut(s)	530, 757
Cac8I	GCNNGC	7 cut(s)	49, 138, 147, 159, 180, 432, 901
CfoI	GCGC	2 cut(s)	102, 126
Cfr10I	RCCGGY	1 cut(s)	47
Csp6I	GTAC	2 cut(s)	520, 1021
CviAII	CATG	4 cut(s)	535, 598, 652, 882
CviQI	GTAC	2 cut(s)	520, 1021
DdeI	CTNAG	6 cut(s)	435, 456, 504, 555, 716, 1050
DpnI	GATC	3 cut(s)	108, 395, 1006
DpnII	GATC	3 cut(s)	106, 393, 1004
Eam1104I	CTCTTC	4 cut(s)	71, 436, 563, 723
EarI	CTCTTC	4 cut(s)	71, 436, 563, 723
EciI	GGCGGA	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	1000
Eco47I	GGWCC	1 cut(s)	21
EcoO109I	RGGNCCY	2 cut(s)	996, 997
EcoRII	CCWGG	2 cut(s)	935, 1000
EcoT14I	CCWWGG	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	1000
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	4 cut(s)	538, 601, 655, 885
FatI	CATG	4 cut(s)	534, 597, 651, 881
FauI	CCCGC	2 cut(s)	171, 423
Fnu4HI	GCNGC	2 cut(s)	756, 759
FokI	GGATG	2 cut(s)	537, 764
FriOI	GRGCYC	1 cut(s)	1000
Fsp4HI	GCNGC	2 cut(s)	756, 759
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	2 cut(s)	101, 125
GluI	GCNGC	2 cut(s)	756, 759
GsaI	CCCAGC	1 cut(s)	996
GsuI	CTGGAG	3 cut(s)	609, 629, 800
HapII	CCGG	2 cut(s)	24, 48
HhaI	GCGC	2 cut(s)	102, 126
Hin1II	CATG	4 cut(s)	538, 601, 655, 885
Hin6I	GCGC	2 cut(s)	100, 124
HinP1I	GCGC	2 cut(s)	100, 124
HinfI	GANTC	3 cut(s)	82, 594, 707
HpaII	CCGG	2 cut(s)	24, 48
HphI	GGTGA	2 cut(s)	871, 967
Hpy188I	TCNGA	3 cut(s)	505, 558, 712
Hpy188III	TCNNGA	5 cut(s)	591, 626, 646, 779, 910
HpyAV	CCTTC	1 cut(s)	944
HpyCH4III	ACNGT	1 cut(s)	1025
HpyCH4V	TGCA	4 cut(s)	57, 758, 830, 872
HpyF3I	CTNAG	6 cut(s)	435, 456, 504, 555, 716, 1050
Hsp92II	CATG	4 cut(s)	538, 601, 655, 885
HspAI	GCGC	2 cut(s)	100, 124
KpnI	GGTACC	1 cut(s)	1024
KroI	GCCGGC	1 cut(s)	47
KroNI	GCCGGC	1 cut(s)	49
Kzo9I	GATC	3 cut(s)	106, 393, 1004
LguI	GCTCTTC	1 cut(s)	436
LmnI	GCTCC	3 cut(s)	175, 427, 615
Lsp1109I	GCAGC	2 cut(s)	742, 770
LweI	GCATC	3 cut(s)	66, 144, 742
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	925
MalI	GATC	3 cut(s)	108, 395, 1006
MbiI	CCGCTC	2 cut(s)	178, 430
MboI	GATC	3 cut(s)	106, 393, 1004
MboII	GAAGA	5 cut(s)	58, 453, 495, 580, 740
MflI	RGATCY	1 cut(s)	1004
MhlI	GDGCHC	1 cut(s)	1000
MluCI	AATT	7 cut(s)	9, 663, 771, 790, 843, 891, 960
MroNI	GCCGGC	1 cut(s)	47
MseI	TTAA	1 cut(s)	942
MspI	CCGG	2 cut(s)	24, 48
MspR9I	CCNGG	3 cut(s)	25, 937, 1002
MvaI	CCWGG	2 cut(s)	937, 1002
MvnI	CGCG	1 cut(s)	126
NaeI	GCCGGC	1 cut(s)	49
NciI	CCSGG	1 cut(s)	25
NdeII	GATC	3 cut(s)	106, 393, 1004
NgoMIV	GCCGGC	1 cut(s)	47
NlaIII	CATG	4 cut(s)	538, 601, 655, 885
NlaIV	GGNNCC	7 cut(s)	22, 46, 968, 997, 998, 999, 1022
NmeAIII	GCCGAG	2 cut(s)	166, 493
NmuCI	GTSAC	1 cut(s)	925
NspI	RCATGY	1 cut(s)	655
PciSI	GCTCTTC	1 cut(s)	436
PdiI	GCCGGC	1 cut(s)	49
PfeI	GAWTC	3 cut(s)	82, 594, 707
PfoI	TCCNGGA	1 cut(s)	23
PkrI	GCNGC	2 cut(s)	757, 760
Ple19I	CGATCG	1 cut(s)	109
Psp6I	CCWGG	2 cut(s)	935, 1000
PspFI	CCCAGC	1 cut(s)	992
PspGI	CCWGG	2 cut(s)	935, 1000
PspN4I	GGNNCC	7 cut(s)	22, 46, 968, 997, 998, 999, 1022
PspOMI	GGGCCC	1 cut(s)	996
PstI	CTGCAG	1 cut(s)	760
PsuI	RGATCY	1 cut(s)	1004
PvuI	CGATCG	1 cut(s)	109
RsaI	GTAC	2 cut(s)	521, 1022
RsaNI	GTAC	2 cut(s)	520, 1021
SapI	GCTCTTC	1 cut(s)	436
SaqAI	TTAA	1 cut(s)	942
SatI	GCNGC	2 cut(s)	756, 759
Sau3AI	GATC	3 cut(s)	106, 393, 1004
ScrFI	CCNGG	3 cut(s)	25, 937, 1002
SduI	GDGCHC	1 cut(s)	1000
SetI	ASST	7 cut(s)	79, 147, 639, 703, 769, 925, 1049
SfaNI	GCATC	3 cut(s)	66, 144, 742
SfcI	CTRYAG	1 cut(s)	756
SinI	GGWCC	1 cut(s)	21
Sse9I	AATT	7 cut(s)	9, 663, 771, 790, 843, 891, 960
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	3 cut(s)	23, 935, 1000
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	1025
TaqI	TCGA	5 cut(s)	80, 105, 109, 115, 592
TasI	AATT	7 cut(s)	9, 663, 771, 790, 843, 891, 960
TfiI	GAWTC	3 cut(s)	82, 594, 707
Tru1I	TTAA	1 cut(s)	942
Tru9I	TTAA	1 cut(s)	942
TseFI	GTSAC	1 cut(s)	925
TseI	GCWGC	2 cut(s)	755, 758
Tsp45I	GTSAC	1 cut(s)	925
TspDTI	ATGAA	3 cut(s)	523, 836, 976
TspGWI	ACGGA	2 cut(s)	537, 575
VpaK11BI	GGWCC	1 cut(s)	21
XapI	RAATTY	2 cut(s)	9, 960
XceI	RCATGY	1 cut(s)	655
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.