Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003098

Physical Location & Seq

Genomic Coordinates Reverse (-)

1845940 .. 1850712

Gene Structure 4773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G039500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCTGGTCGATACGATAGTAACCCTTTTGCTGAAGAAGATGAAGTCAATCCCTTCTCTAATCCTGGAAGTGTTGCTCCTGCCAAAAACTCAAGACTTTCACCTCTTCCTCCTGAGCGTGCTGGTTTCAATTATGGCCTTGGTGACACCGTTGATATACCTATCGATGGAAATGCAGATCTGAAAAAGAGGGAAAGGGAGCTCCAAGCTAAAGAAACTGAATTGAGAAAGCGGGAGGAGATAGTAAAACGGAAAGAAGATGCGGCAGCACGTGCTGGAATTGTTCTTGAGGAAAAAAATTGGCCAGCTTTCTTCCCAATTATCCATCATGATATTGCAAATGAAATACCGATTCACTTACAAAGGGTGCAGTATGTTGCGTTTACAACATGGTTAGGAATTGTTCTTTGCCTTTTCTGGAATATAATAGCTGTTACTACAGCGTGGATTAAGGGCGAAGGGGTAAAAATCTGGTTCCTTGCTGTTATCTACTTCATAGCAGGGGCTCCTGGATCCTATGTCTTGTGGTACCGACCACTGTACCGAGTTTTCAGGTCCGAGAGTGCTTTGAAGTATGGATGGTTTTTCATGTTTTATTTGCTCCACATTGGCTTCTGCATCTTTGCTGCTGTTGCGCCTCCACTAATTTTCAAAGGAAAATCTCTCACTGGCATTCTGGCTGCAGTTGATGTTGTGGGAAACCATGCTTTGGTTGGGATCTTCTACTTCATTGGATTTGGAATGTTCTGTCTTGAATCATTGCTTAGCATCTGGGTTATTCAGCAAGTGTACATGTACTTCCGGGGAAGTGGTAAAGCGGCCGAAATGAGGCGTGAAGGAGCAAGAGGAGTTGTGAGGGCAGCGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0097708 GO:0098657 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

290

Amino Acids

32.59

Weight (kDa)

8.86

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11180 AT1G11180 AT1G11180 AT1G61250 AT1G61250 AT2G20840 AT2G20840 AT2G20840
fragaria_vesca	FvH4_3g04440
malus_domestica	MD05G1323100.v1.1 MD10G1300900.v1.1
prunus_persica	Prupe.4G039500_v2.0.a1 Prupe.4G039500_v2.0.a1
pyrus_communis	pycom05g29740 pycom10g25380
rosa_chinensis	RchiOBHm_Chr5g0006841 RchiOBHm_Chr5g0006891 RchiOBHm_Chr5g0007151 RchiOBHm_Chr5g0007321
rosa_laevigata	RLG00000031433 RLG00000031444
rosa_multiflora	Rmu_sc0001044.1_g000035 Rmu_sc0001838.1_g000001 Rmu_sc0003826.1_g000003
rosa_roxburghii	Rroxscaffold_1G00069210
rosa_rugosa	Rorug04G0424900
rosa_samantha	Rh5AG052600 Rh5AG053300 Rh5BG051500 Rh5BG052300 Rh5CG060200 Rh5CG060900 Rh5CG062300 Rh5DG050800
rosa_wichuraiana	Rw5G005140 Rw5G005200 Rw5G005510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	528
AccB1I	GGYRCC	1 cut(s)	528
AccB7I	CCANNNNNTGG	1 cut(s)	709
AciI	CCGC	3 cut(s)	232, 263, 818
AclWI	GGATC	3 cut(s)	507, 520, 725
AcoI	YGGCCR	2 cut(s)	302, 819
AcuI	CTGAAG	1 cut(s)	54
AcvI	CACGTG	1 cut(s)	272
AfaI	GTAC	4 cut(s)	530, 542, 791, 797
AfeI	AGCGCT	1 cut(s)	864
AfiI	CCNNNNNNNGG	3 cut(s)	167, 709, 828
AflIII	ACRYGT	1 cut(s)	792
AgsI	TTSAA	4 cut(s)	130, 571, 652, 755
AjnI	CCWGG	2 cut(s)	64, 508
AluBI	AGCT	4 cut(s)	202, 209, 308, 431
AluI	AGCT	4 cut(s)	202, 209, 308, 431
Alw21I	GWGCWC	1 cut(s)	204
AlwI	GGATC	3 cut(s)	507, 520, 725
Aor51HI	AGCGCT	1 cut(s)	864
AoxI	GGCC	3 cut(s)	136, 302, 819
ApeKI	GCWGC	4 cut(s)	266, 626, 680, 860
Asp718I	GGTACC	1 cut(s)	528
AspLEI	GCGC	2 cut(s)	637, 865
AspS9I	GGNCC	1 cut(s)	555
AsuC2I	CCSGG	1 cut(s)	803
AsuHPI	GGTGA	2 cut(s)	93, 155
AvaII	GGWCC	1 cut(s)	555
BaeI	ACNNNNGTAYC	3 cut(s)	37, 524, 557
BalI	TGGCCA	1 cut(s)	304
BamHI	GGATCC	1 cut(s)	512
BanI	GGYRCC	1 cut(s)	528
BanII	GRGCYC	2 cut(s)	204, 508
BarI	GAAGNNNNNNTAC	2 cut(s)	782, 814
BbrPI	CACGTG	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	3 cut(s)	278, 613, 667
BccI	CCATC	3 cut(s)	161, 333, 573
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BciT130I	CCWGG	2 cut(s)	66, 510
BcnI	CCSGG	1 cut(s)	803
BfmI	CTRYAG	2 cut(s)	438, 681
BfoI	RGCGCY	1 cut(s)	866
BglII	AGATCT	1 cut(s)	178
BisI	GCNGC	6 cut(s)	264, 267, 627, 681, 819, 861
BlpI	GCTNAGC	1 cut(s)	764
BlsI	GCNGC	6 cut(s)	265, 268, 628, 682, 820, 862
Bme1390I	CCNGG	3 cut(s)	66, 510, 803
Bme18I	GGWCC	1 cut(s)	555
BmgT120I	GGNCC	1 cut(s)	555
BmiI	GGNNCC	4 cut(s)	476, 507, 514, 530
BmrFI	CCNGG	3 cut(s)	66, 510, 803
BmsI	GCATC	3 cut(s)	250, 627, 777
Bpu10I	CCTNAGC	1 cut(s)	114
Bpu1102I	GCTNAGC	1 cut(s)	764
BpuEI	CTTGAG	2 cut(s)	76, 308
BpuMI	CCSGG	1 cut(s)	803
Bsa29I	ATCGAT	1 cut(s)	165
BsaAI	YACGTR	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	139, 802
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 709, 828
Bse1I	ACTGG	1 cut(s)	673
Bse3DI	GCAATG	1 cut(s)	758
BseBI	CCWGG	2 cut(s)	66, 510
BseCI	ATCGAT	1 cut(s)	165
BseDI	CCNNGG	2 cut(s)	139, 802
BseGI	GGATG	1 cut(s)	584
BseLI	CCNNNNNNNGG	3 cut(s)	167, 709, 828
BseMI	GCAATG	1 cut(s)	758
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	673
BseRI	GAGGAG	2 cut(s)	251, 861
BseX3I	CGGCCG	1 cut(s)	819
BseXI	GCAGC	3 cut(s)	278, 613, 667
BsgI	GTGCAG	1 cut(s)	389
Bsh1285I	CGRYCG	1 cut(s)	822
BshFI	GGCC	3 cut(s)	138, 304, 821
BshNI	GGYRCC	1 cut(s)	528
BshVI	ATCGAT	1 cut(s)	165
BsiEI	CGRYCG	1 cut(s)	822
BsiHKAI	GWGCWC	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	802
BslI	CCNNNNNNNGG	3 cut(s)	167, 709, 828
BsmI	GAATGC	1 cut(s)	672
BsnI	GGCC	3 cut(s)	138, 304, 821
Bsp1286I	GDGCHC	2 cut(s)	204, 508
Bsp1407I	TGTACA	1 cut(s)	789
Bsp143I	GATC	3 cut(s)	178, 512, 717
Bsp1720I	GCTNAGC	1 cut(s)	764
BspACI	CCGC	3 cut(s)	232, 263, 818
BspANI	GGCC	3 cut(s)	138, 304, 821
BspCNI	CTCAG	1 cut(s)	106
BspDI	ATCGAT	1 cut(s)	165
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	4 cut(s)	476, 507, 514, 530
BspMAI	CTGCAG	1 cut(s)	685
BspPI	GGATC	3 cut(s)	507, 520, 725
BspT107I	GGYRCC	1 cut(s)	528
BsrDI	GCAATG	1 cut(s)	758
BsrGI	TGTACA	1 cut(s)	789
BsrI	ACTGG	1 cut(s)	673
BssECI	CCNNGG	2 cut(s)	139, 802
BssMI	GATC	3 cut(s)	178, 512, 717
BssT1I	CCWWGG	1 cut(s)	139
Bst2UI	CCWGG	2 cut(s)	66, 510
Bst4CI	ACNGT	2 cut(s)	151, 540
Bst6I	CTCTTC	1 cut(s)	111
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstAUI	TGTACA	1 cut(s)	789
BstBAI	YACGTR	1 cut(s)	272
BstC8I	GCNNGC	2 cut(s)	120, 306
BstDEI	CTNAG	2 cut(s)	114, 764
BstF5I	GGATG	1 cut(s)	584
BstH2I	RGCGCY	1 cut(s)	866
BstHHI	GCGC	2 cut(s)	637, 865
BstKTI	GATC	3 cut(s)	181, 515, 720
BstMBI	GATC	3 cut(s)	178, 512, 717
BstMCI	CGRYCG	1 cut(s)	822
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 632
BstNI	CCWGG	2 cut(s)	66, 510
BstNSI	RCATGY	1 cut(s)	796
BstSCI	CCNGG	3 cut(s)	64, 508, 801
BstSFI	CTRYAG	2 cut(s)	438, 681
BstV1I	GCAGC	3 cut(s)	278, 613, 667
BstX2I	RGATCY	3 cut(s)	178, 512, 717
BstYI	RGATCY	3 cut(s)	178, 512, 717
BstZI	CGGCCG	1 cut(s)	819
Bsu15I	ATCGAT	1 cut(s)	165
BsuRI	GGCC	3 cut(s)	138, 304, 821
BsuTUI	ATCGAT	1 cut(s)	165
BtsCI	GGATG	1 cut(s)	584
BtsIMutI	CAGTG	2 cut(s)	536, 666
Cac8I	GCNNGC	2 cut(s)	120, 306
CciI	TCATGA	1 cut(s)	328
CfoI	GCGC	2 cut(s)	637, 865
Cfr13I	GGNCC	1 cut(s)	555
ClaI	ATCGAT	1 cut(s)	165
Csp6I	GTAC	4 cut(s)	529, 541, 790, 796
CviAII	CATG	5 cut(s)	329, 390, 589, 704, 793
CviQI	GTAC	4 cut(s)	529, 541, 790, 796
DdeI	CTNAG	2 cut(s)	114, 764
DpnI	GATC	3 cut(s)	180, 514, 719
DpnII	GATC	3 cut(s)	178, 512, 717
EaeI	YGGCCR	2 cut(s)	302, 819
EagI	CGGCCG	1 cut(s)	819
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Ecl136II	GAGCTC	1 cut(s)	202
EclXI	CGGCCG	1 cut(s)	819
Eco130I	CCWWGG	1 cut(s)	139
Eco24I	GRGCYC	2 cut(s)	204, 508
Eco47I	GGWCC	1 cut(s)	555
Eco47III	AGCGCT	1 cut(s)	864
Eco52I	CGGCCG	1 cut(s)	819
Eco53kI	GAGCTC	1 cut(s)	202
Eco57I	CTGAAG	1 cut(s)	54
Eco72I	CACGTG	1 cut(s)	272
EcoICRI	GAGCTC	1 cut(s)	202
EcoRII	CCWGG	2 cut(s)	64, 508
EcoT14I	CCWWGG	1 cut(s)	139
EcoT38I	GRGCYC	2 cut(s)	204, 508
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	5 cut(s)	332, 393, 592, 707, 796
FatI	CATG	5 cut(s)	328, 389, 588, 703, 792
FauI	CCCGC	1 cut(s)	225
Fnu4HI	GCNGC	6 cut(s)	264, 267, 627, 681, 819, 861
FokI	GGATG	1 cut(s)	591
FriOI	GRGCYC	2 cut(s)	204, 508
Fsp4HI	GCNGC	6 cut(s)	264, 267, 627, 681, 819, 861
GlaI	GCGC	2 cut(s)	636, 864
GluI	GCNGC	6 cut(s)	264, 267, 627, 681, 819, 861
HaeII	RGCGCY	1 cut(s)	866
HaeIII	GGCC	3 cut(s)	138, 304, 821
HapII	CCGG	1 cut(s)	802
HhaI	GCGC	2 cut(s)	637, 865
Hin1II	CATG	5 cut(s)	332, 393, 592, 707, 796
Hin6I	GCGC	2 cut(s)	635, 863
HinP1I	GCGC	2 cut(s)	635, 863
HinfI	GANTC	2 cut(s)	352, 755
HpaII	CCGG	1 cut(s)	802
HphI	GGTGA	2 cut(s)	93, 155
Hpy166II	GTNNAC	2 cut(s)	384, 790
Hpy188I	TCNGA	2 cut(s)	183, 559
Hpy188III	TCNNGA	6 cut(s)	93, 113, 287, 329, 418, 752
Hpy8I	GTNNAC	2 cut(s)	384, 790
HpyAV	CCTTC	3 cut(s)	64, 452, 830
HpyCH4III	ACNGT	2 cut(s)	151, 540
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	5 cut(s)	176, 338, 370, 618, 683
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 632
HpyF3I	CTNAG	2 cut(s)	114, 764
HpySE526I	ACGT	1 cut(s)	271
Hsp92II	CATG	5 cut(s)	332, 393, 592, 707, 796
HspAI	GCGC	2 cut(s)	635, 863
KpnI	GGTACC	1 cut(s)	532
Kzo9I	GATC	3 cut(s)	178, 512, 717
LmnI	GCTCC	6 cut(s)	82, 199, 207, 511, 606, 839
Lsp1109I	GCAGC	3 cut(s)	278, 613, 667
LweI	GCATC	3 cut(s)	250, 627, 777
MaeII	ACGT	1 cut(s)	271
MaeIII	GTNAC	3 cut(s)	20, 143, 433
MalI	GATC	3 cut(s)	180, 514, 719
MboI	GATC	3 cut(s)	178, 512, 717
MboII	GAAGA	6 cut(s)	47, 50, 98, 269, 304, 712
MflI	RGATCY	3 cut(s)	178, 512, 717
MhlI	GDGCHC	2 cut(s)	204, 508
MlsI	TGGCCA	1 cut(s)	304
MluCI	AATT	7 cut(s)	130, 221, 279, 298, 318, 399, 645
MluNI	TGGCCA	1 cut(s)	304
MnlI	CCTC	9 cut(s)	114, 120, 183, 229, 283, 648, 822, 839, 849
Mox20I	TGGCCA	1 cut(s)	304
MscI	TGGCCA	1 cut(s)	304
MseI	TTAA	1 cut(s)	450
Msp20I	TGGCCA	1 cut(s)	304
MspI	CCGG	1 cut(s)	802
MspR9I	CCNGG	3 cut(s)	66, 510, 803
Mva1269I	GAATGC	1 cut(s)	672
MvaI	CCWGG	2 cut(s)	66, 510
MwoI	GCNNNNNNNGC	2 cut(s)	272, 632
NciI	CCSGG	1 cut(s)	803
NdeII	GATC	3 cut(s)	178, 512, 717
NlaIII	CATG	5 cut(s)	332, 393, 592, 707, 796
NlaIV	GGNNCC	4 cut(s)	476, 507, 514, 530
NmuCI	GTSAC	1 cut(s)	143
NspI	RCATGY	1 cut(s)	796
PagI	TCATGA	1 cut(s)	328
PciI	ACATGT	1 cut(s)	792
PctI	GAATGC	1 cut(s)	672
PfeI	GAWTC	2 cut(s)	352, 755
PflMI	CCANNNNNTGG	1 cut(s)	709
PfoI	TCCNGGA	2 cut(s)	64, 508
PkrI	GCNGC	6 cut(s)	265, 268, 628, 682, 820, 862
PmaCI	CACGTG	1 cut(s)	272
PmlI	CACGTG	1 cut(s)	272
Ppu21I	YACGTR	1 cut(s)	272
PscI	ACATGT	1 cut(s)	792
Psp124BI	GAGCTC	1 cut(s)	204
Psp6I	CCWGG	2 cut(s)	64, 508
PspCI	CACGTG	1 cut(s)	272
PspGI	CCWGG	2 cut(s)	64, 508
PspN4I	GGNNCC	4 cut(s)	476, 507, 514, 530
PspPI	GGNCC	1 cut(s)	555
PstI	CTGCAG	1 cut(s)	685
PsuI	RGATCY	3 cut(s)	178, 512, 717
RsaI	GTAC	4 cut(s)	530, 542, 791, 797
RsaNI	GTAC	4 cut(s)	529, 541, 790, 796
SacI	GAGCTC	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	6 cut(s)	264, 267, 627, 681, 819, 861
Sau3AI	GATC	3 cut(s)	178, 512, 717
Sau96I	GGNCC	1 cut(s)	555
ScrFI	CCNGG	3 cut(s)	66, 510, 803
SduI	GDGCHC	2 cut(s)	204, 508
SetI	ASST	8 cut(s)	106, 163, 204, 211, 274, 310, 433, 557
SfaNI	GCATC	3 cut(s)	250, 627, 777
SfcI	CTRYAG	2 cut(s)	438, 681
SinI	GGWCC	1 cut(s)	555
SmlI	CTYRAG	2 cut(s)	91, 287
SmoI	CTYRAG	2 cut(s)	91, 287
Sse9I	AATT	7 cut(s)	130, 221, 279, 298, 318, 399, 645
SsiI	CCGC	3 cut(s)	232, 263, 818
SstI	GAGCTC	1 cut(s)	204
StyD4I	CCNGG	3 cut(s)	64, 508, 801
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	2 cut(s)	151, 540
TaiI	ACGT	1 cut(s)	274
TaqI	TCGA	2 cut(s)	10, 165
TasI	AATT	7 cut(s)	130, 221, 279, 298, 318, 399, 645
TatI	WGTACW	2 cut(s)	789, 795
TauI	GCSGC	2 cut(s)	266, 821
TfiI	GAWTC	2 cut(s)	352, 755
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TscAI	CASTG	2 cut(s)	543, 673
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	4 cut(s)	266, 626, 680, 860
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	5 cut(s)	57, 357, 484, 577, 718
TspGWI	ACGGA	1 cut(s)	265
TspRI	CASTG	2 cut(s)	543, 673
Van91I	CCANNNNNTGG	1 cut(s)	709
VpaK11BI	GGWCC	1 cut(s)	555
XceI	RCATGY	1 cut(s)	796
XcmI	CCANNNNNNNNNTGG	1 cut(s)	710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.