Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001044.1

Orthogroup ID

OG0003098

Physical Location & Seq

Genomic Coordinates Forward (+)

122374 .. 126029

Gene Structure 3656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001044.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atggctggtcgattcgatagtaaccccttcgctgaagaagaggaagtcaatccgttctcgaatcatggaagcgttgctcccgccaagaactccagactatcacctctgcctccggaacgtgctggtttcaattacggtattggtgaaaccgtcgatatacctattgatggaagtggggatttgaaaaagagggagagggaactccaagctaaagaagctgaactgagaaagcgtgaagagattgtaaaacggaaagaggatgctgctgcacgagctggaattgttctcgaggaaaaaaattggccacctttctttccacttatccatcatgatattgcaaatgaaataccaattcatttacaaagggtgatgtatgttgcatttacaacatggttaggaattgttgcttgcctattctggaatataatagctgtgactactgcctggattaagggtgaaggggtgaaaatttggttccttgcggttatatatttcattgctggggcccctggatcttatgtgttgtggtaccgtcctctttaccgcgtgttcaggtattactttctcttggtgataaatttgatcttctacttcattggatttggcatgttctgtcttgaatcagtgcttagcatctgggttattcagcaagtatacatgtacttccggggaagtggtaaagctgctgaaatgaggcgtgaaggcgcaagacatgttgcgagggcagcaatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0097708 GO:0098657 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

244

Amino Acids

27.95

Weight (kDa)

8.78

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11180 AT1G11180 AT1G11180 AT1G61250 AT1G61250 AT2G20840 AT2G20840 AT2G20840
fragaria_vesca	FvH4_3g04440
malus_domestica	MD05G1323100.v1.1 MD10G1300900.v1.1
prunus_persica	Prupe.4G039500_v2.0.a1 Prupe.4G039500_v2.0.a1
pyrus_communis	pycom05g29740 pycom10g25380
rosa_chinensis	RchiOBHm_Chr5g0006841 RchiOBHm_Chr5g0006891 RchiOBHm_Chr5g0007151 RchiOBHm_Chr5g0007321
rosa_laevigata	RLG00000031433 RLG00000031444
rosa_multiflora	Rmu_sc0001044.1_g000035 Rmu_sc0001838.1_g000001 Rmu_sc0003826.1_g000003
rosa_roxburghii	Rroxscaffold_1G00069210
rosa_rugosa	Rorug04G0424900
rosa_samantha	Rh5AG052600 Rh5AG053300 Rh5BG051500 Rh5BG052300 Rh5CG060200 Rh5CG060900 Rh5CG062300 Rh5DG050800
rosa_wichuraiana	Rw5G005140 Rw5G005200 Rw5G005510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	528
AccB1I	GGYRCC	1 cut(s)	528
AccI	GTMKAC	1 cut(s)	654
AccII	CGCG	1 cut(s)	546
AccIII	TCCGGA	1 cut(s)	112
AciI	CCGC	3 cut(s)	81, 482, 544
AclWI	GGATC	1 cut(s)	520
AcoI	YGGCCR	1 cut(s)	302
AcsI	RAATTY	2 cut(s)	468, 577
AcuI	CTGAAG	1 cut(s)	54
AfaI	GTAC	2 cut(s)	530, 662
AfiI	CCNNNNNNNGG	1 cut(s)	167
AflIII	ACRYGT	2 cut(s)	657, 712
AgsI	TTSAA	3 cut(s)	130, 184, 620
AjnI	CCWGG	2 cut(s)	443, 508
AluBI	AGCT	5 cut(s)	209, 218, 275, 431, 683
AluI	AGCT	5 cut(s)	209, 218, 275, 431, 683
AlwI	GGATC	1 cut(s)	520
Ama87I	CYCGRG	1 cut(s)	287
Aor13HI	TCCGGA	1 cut(s)	112
AoxI	GGCC	2 cut(s)	302, 504
ApaI	GGGCCC	1 cut(s)	508
ApeKI	GCWGC	4 cut(s)	263, 266, 683, 725
ApoI	RAATTY	2 cut(s)	468, 577
Asp718I	GGTACC	1 cut(s)	528
AspLEI	GCGC	1 cut(s)	707
AspS9I	GGNCC	2 cut(s)	504, 505
AsuC2I	CCSGG	1 cut(s)	668
AsuHPI	GGTGA	6 cut(s)	93, 155, 379, 467, 475, 583
AvaI	CYCGRG	1 cut(s)	287
BaeGI	GKGCMC	1 cut(s)	508
BalI	TGGCCA	1 cut(s)	304
BanI	GGYRCC	1 cut(s)	528
BanII	GRGCYC	1 cut(s)	508
BauI	CACGAG	1 cut(s)	270
BbvI	GCAGC	3 cut(s)	250, 253, 670
BccI	CCATC	2 cut(s)	161, 333
BciT130I	CCWGG	2 cut(s)	445, 510
BcnI	CCSGG	1 cut(s)	668
BisI	GCNGC	4 cut(s)	264, 267, 684, 726
BlpI	GCTNAGC	1 cut(s)	629
BlsI	GCNGC	4 cut(s)	265, 268, 685, 727
Bme1390I	CCNGG	3 cut(s)	445, 510, 668
BmeT110I	CYCGRG	1 cut(s)	287
BmgT120I	GGNCC	2 cut(s)	504, 505
BmiI	GGNNCC	5 cut(s)	476, 505, 506, 507, 530
BmrFI	CCNGG	3 cut(s)	445, 510, 668
BmsI	GCATC	2 cut(s)	250, 642
BpmI	CTGGAG	1 cut(s)	76
Bpu1102I	GCTNAGC	1 cut(s)	629
BpuMI	CCSGG	1 cut(s)	668
BsaJI	CCNNGG	2 cut(s)	508, 667
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse3DI	GCAATG	1 cut(s)	495
BseAI	TCCGGA	1 cut(s)	112
BseBI	CCWGG	2 cut(s)	445, 510
BseDI	CCNNGG	2 cut(s)	508, 667
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMI	GCAATG	1 cut(s)	495
BseMII	CTCAG	1 cut(s)	215
BseSI	GKGCMC	1 cut(s)	508
BseXI	GCAGC	3 cut(s)	250, 253, 670
BseYI	CCCAGC	1 cut(s)	500
BsgI	GTGCAG	1 cut(s)	252
Bsh1236I	CGCG	1 cut(s)	546
BshFI	GGCC	2 cut(s)	304, 506
BshNI	GGYRCC	1 cut(s)	528
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	2 cut(s)	113, 667
BslI	CCNNNNNNNGG	1 cut(s)	167
BsnI	GGCC	2 cut(s)	304, 506
BsoBI	CYCGRG	1 cut(s)	287
Bsp120I	GGGCCC	1 cut(s)	504
Bsp1286I	GDGCHC	1 cut(s)	508
Bsp13I	TCCGGA	1 cut(s)	112
Bsp143I	GATC	2 cut(s)	512, 582
Bsp1720I	GCTNAGC	1 cut(s)	629
BspACI	CCGC	3 cut(s)	81, 482, 544
BspANI	GGCC	2 cut(s)	304, 506
BspCNI	CTCAG	1 cut(s)	216
BspEI	TCCGGA	1 cut(s)	112
BspFNI	CGCG	1 cut(s)	546
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	5 cut(s)	476, 505, 506, 507, 530
BspPI	GGATC	1 cut(s)	520
BspT107I	GGYRCC	1 cut(s)	528
BsrDI	GCAATG	1 cut(s)	495
BssECI	CCNNGG	2 cut(s)	508, 667
BssMI	GATC	2 cut(s)	512, 582
BssNAI	GTATAC	1 cut(s)	655
BssSI	CACGAG	1 cut(s)	270
Bst1107I	GTATAC	1 cut(s)	655
Bst2BI	CACGAG	1 cut(s)	270
Bst2UI	CCWGG	2 cut(s)	445, 510
Bst4CI	ACNGT	3 cut(s)	137, 151, 533
Bst6I	CTCTTC	2 cut(s)	33, 231
BstC8I	GCNNGC	1 cut(s)	409
BstDEI	CTNAG	2 cut(s)	224, 629
BstF5I	GGATG	1 cut(s)	265
BstFNI	CGCG	1 cut(s)	546
BstHHI	GCGC	1 cut(s)	707
BstKTI	GATC	2 cut(s)	515, 585
BstMBI	GATC	2 cut(s)	512, 582
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 272, 725
BstNI	CCWGG	2 cut(s)	445, 510
BstNSI	RCATGY	3 cut(s)	610, 661, 716
BstSCI	CCNGG	3 cut(s)	443, 508, 666
BstSLI	GKGCMC	1 cut(s)	508
BstUI	CGCG	1 cut(s)	546
BstV1I	GCAGC	3 cut(s)	250, 253, 670
BstX2I	RGATCY	1 cut(s)	512
BstYI	RGATCY	1 cut(s)	512
BstZ17I	GTATAC	1 cut(s)	655
BsuRI	GGCC	2 cut(s)	304, 506
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	630
Cac8I	GCNNGC	1 cut(s)	409
CciI	TCATGA	1 cut(s)	328
CfoI	GCGC	1 cut(s)	707
Cfr13I	GGNCC	2 cut(s)	504, 505
Csp6I	GTAC	2 cut(s)	529, 661
CviAII	CATG	6 cut(s)	65, 329, 390, 607, 658, 713
CviJI	RGCY	8 cut(s)	5, 209, 218, 275, 304, 431, 506, 683
CviKI_1	RGCY	8 cut(s)	5, 209, 218, 275, 304, 431, 506, 683
CviQI	GTAC	2 cut(s)	529, 661
DdeI	CTNAG	2 cut(s)	224, 629
DpnI	GATC	2 cut(s)	514, 584
DpnII	GATC	2 cut(s)	512, 582
EaeI	YGGCCR	1 cut(s)	302
Eam1104I	CTCTTC	2 cut(s)	33, 231
EarI	CTCTTC	2 cut(s)	33, 231
Eco24I	GRGCYC	1 cut(s)	508
Eco57I	CTGAAG	1 cut(s)	54
Eco88I	CYCGRG	1 cut(s)	287
EcoO109I	RGGNCCY	2 cut(s)	504, 505
EcoRII	CCWGG	2 cut(s)	443, 508
EcoT38I	GRGCYC	1 cut(s)	508
FaeI	CATG	6 cut(s)	68, 332, 393, 610, 661, 716
FatI	CATG	6 cut(s)	64, 328, 389, 606, 657, 712
FauI	CCCGC	1 cut(s)	88
FblI	GTMKAC	1 cut(s)	654
Fnu4HI	GCNGC	4 cut(s)	264, 267, 684, 726
FokI	GGATG	1 cut(s)	272
FriOI	GRGCYC	1 cut(s)	508
Fsp4HI	GCNGC	4 cut(s)	264, 267, 684, 726
GlaI	GCGC	1 cut(s)	706
GluI	GCNGC	4 cut(s)	264, 267, 684, 726
GsaI	CCCAGC	1 cut(s)	504
GsuI	CTGGAG	1 cut(s)	76
HaeIII	GGCC	2 cut(s)	304, 506
HapII	CCGG	2 cut(s)	113, 667
HhaI	GCGC	1 cut(s)	707
Hin1II	CATG	6 cut(s)	68, 332, 393, 610, 661, 716
Hin6I	GCGC	1 cut(s)	705
HinP1I	GCGC	1 cut(s)	705
HinfI	GANTC	3 cut(s)	12, 61, 620
HpaII	CCGG	2 cut(s)	113, 667
HphI	GGTGA	6 cut(s)	93, 155, 379, 467, 475, 583
Hpy166II	GTNNAC	1 cut(s)	655
Hpy188III	TCNNGA	7 cut(s)	58, 93, 113, 287, 329, 418, 617
Hpy8I	GTNNAC	1 cut(s)	655
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	3 cut(s)	37, 452, 695
HpyCH4III	ACNGT	3 cut(s)	137, 151, 533
HpyCH4IV	ACGT	1 cut(s)	118
HpyCH4V	TGCA	3 cut(s)	269, 338, 380
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 272, 725
HpyF3I	CTNAG	2 cut(s)	224, 629
HpySE526I	ACGT	1 cut(s)	118
Hsp92II	CATG	6 cut(s)	68, 332, 393, 610, 661, 716
HspAI	GCGC	1 cut(s)	705
Kpn2I	TCCGGA	1 cut(s)	112
KpnI	GGTACC	1 cut(s)	532
Kzo9I	GATC	2 cut(s)	512, 582
LmnI	GCTCC	1 cut(s)	82
Lsp1109I	GCAGC	3 cut(s)	250, 253, 670
LweI	GCATC	2 cut(s)	250, 642
MaeII	ACGT	1 cut(s)	118
MaeIII	GTNAC	2 cut(s)	20, 433
MalI	GATC	2 cut(s)	514, 584
MboI	GATC	2 cut(s)	512, 582
MboII	GAAGA	4 cut(s)	47, 50, 248, 577
MflI	RGATCY	1 cut(s)	512
MhlI	GDGCHC	1 cut(s)	508
MlsI	TGGCCA	1 cut(s)	304
MluCI	AATT	7 cut(s)	130, 279, 298, 351, 399, 468, 577
MluNI	TGGCCA	1 cut(s)	304
Mox20I	TGGCCA	1 cut(s)	304
MroI	TCCGGA	1 cut(s)	112
MscI	TGGCCA	1 cut(s)	304
MseI	TTAA	1 cut(s)	450
Msp20I	TGGCCA	1 cut(s)	304
MspI	CCGG	2 cut(s)	113, 667
MspR9I	CCNGG	3 cut(s)	445, 510, 668
MvaI	CCWGG	2 cut(s)	445, 510
MvnI	CGCG	1 cut(s)	546
MwoI	GCNNNNNNNGC	3 cut(s)	215, 272, 725
NciI	CCSGG	1 cut(s)	668
NdeII	GATC	2 cut(s)	512, 582
NlaIII	CATG	6 cut(s)	68, 332, 393, 610, 661, 716
NlaIV	GGNNCC	5 cut(s)	476, 505, 506, 507, 530
NmuCI	GTSAC	1 cut(s)	433
NspI	RCATGY	3 cut(s)	610, 661, 716
PaeR7I	CTCGAG	1 cut(s)	287
PagI	TCATGA	1 cut(s)	328
PciI	ACATGT	2 cut(s)	657, 712
PfeI	GAWTC	3 cut(s)	12, 61, 620
PkrI	GCNGC	4 cut(s)	265, 268, 685, 727
PscI	ACATGT	2 cut(s)	657, 712
Psp6I	CCWGG	2 cut(s)	443, 508
PspFI	CCCAGC	1 cut(s)	500
PspGI	CCWGG	2 cut(s)	443, 508
PspN4I	GGNNCC	5 cut(s)	476, 505, 506, 507, 530
PspOMI	GGGCCC	1 cut(s)	504
PspPI	GGNCC	2 cut(s)	504, 505
PsuI	RGATCY	1 cut(s)	512
RsaI	GTAC	2 cut(s)	530, 662
RsaNI	GTAC	2 cut(s)	529, 661
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	4 cut(s)	264, 267, 684, 726
Sau3AI	GATC	2 cut(s)	512, 582
Sau96I	GGNCC	2 cut(s)	504, 505
ScrFI	CCNGG	3 cut(s)	445, 510, 668
SduI	GDGCHC	1 cut(s)	508
SfaNI	GCATC	2 cut(s)	250, 642
Sfr274I	CTCGAG	1 cut(s)	287
SlaI	CTCGAG	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	7 cut(s)	130, 279, 298, 351, 399, 468, 577
SsiI	CCGC	3 cut(s)	81, 482, 544
StyD4I	CCNGG	3 cut(s)	443, 508, 666
TaaI	ACNGT	3 cut(s)	137, 151, 533
TaiI	ACGT	1 cut(s)	121
TaqI	TCGA	5 cut(s)	10, 15, 59, 153, 288
TasI	AATT	7 cut(s)	130, 279, 298, 351, 399, 468, 577
TatI	WGTACW	1 cut(s)	660
TfiI	GAWTC	3 cut(s)	12, 61, 620
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TscAI	CASTG	1 cut(s)	630
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	4 cut(s)	263, 266, 683, 725
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	4 cut(s)	344, 357, 484, 583
TspGWI	ACGGA	2 cut(s)	42, 265
TspRI	CASTG	1 cut(s)	630
XapI	RAATTY	2 cut(s)	468, 577
XceI	RCATGY	3 cut(s)	610, 661, 716
XhoI	CTCGAG	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.