Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003098

Physical Location & Seq

Genomic Coordinates Reverse (-)

5762973 .. 5786566

Gene Structure 23594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G005510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGGTGTGCTAGATTATCTGCAAGACAATTTAACAATAAGCTCCAATCCCAAAAAGAAATGCAAGGCAATGCAGGCATCATCCAAACCTCTCAATAAACAACTTCCCTTTGAAGCGGAGAAAGACAGAGCATGGATTTGGTCTTTACTTGTCATTCGATTTCATCTAATACTCATTAAAACTGACGCATTGACGCATTTTCTCATCAACAACTTCATCGAAAGGAATATGAGCGGTATATCAACTCGAGGTCTCACGTGGTTGATTTCATCTTGGTCAAAAGAATGGCTAGTCAGATTTCATCTCATTGATAGGCAAGCCCGCTGGATTCCATCTTCTTGCAGGTCTGAGAGTGCTTTGAAGTACGGATGGTTTTTCATGTTTCTGGTAATGTTGTCTCAGATTTCTTTGAAGAGGAGGAAGTCAATCCGTTCTCGAATCATGGAAGCGTTGCTCCTGCCAAGAACTCCAGACTACCACCTCTGCCTCCAGAACATGCTGGTTTCAATTATGGATTTGAAAAAGAGGGAGAGGGAACTCCAAGCTAAAGAATCTGAACTGAGAAAGCGTGAAGAGAATGTAAAACAGAAAGAGGATGCTGCAGCACGAGCTGGAATTGTTCTGGAGGAAAAAAATTGGCCTCCTTTCTTTCCACTTATCCATAATGATATTGCAAACGAAATACCAATTCATTTACAAAGGGTGATGTATGTTGCATTTACAACATGGTTAGGAATTGTTGCTTGCCTATTCTGGAATATAATAGCTGTGACTACTGCCTGGATTAAGAGTGAAGGGGTGAAAATTTGGTTCCTTGCGGTTATATATTTCATTGCTGGGGCCCCTGGATCTTATGTGTTGTGGTACCGTCCTCTTTGCCGTGTGTTCAGTGCTTTGAAGTACGGATGGTTTTTCATGTTTCTGATCCACATTGGCTTCTGCATCTTTGCTGCGGTTGCTCCCCCTATAATGTTCAAAGGAAAATCCTTCATTGGCATTCTGGCTGCAATTGATGTTCGAAGTGATCATGCTTTGGTTAGGCAAGTATACATGTACGTCCCGGGAAGTGGTAAAGCTGCTAAAATGAAGACAAGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0097708 GO:0098657 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

366

Amino Acids

42.53

Weight (kDa)

9.86

Isoelectric Point (pI)

49.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCAMP	PF04144	210 - 352	1.5e-38	SCAMP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11180 AT1G11180 AT1G11180 AT1G61250 AT1G61250 AT2G20840 AT2G20840 AT2G20840
fragaria_vesca	FvH4_3g04440
malus_domestica	MD05G1323100.v1.1 MD10G1300900.v1.1
prunus_persica	Prupe.4G039500_v2.0.a1 Prupe.4G039500_v2.0.a1
pyrus_communis	pycom05g29740 pycom10g25380
rosa_chinensis	RchiOBHm_Chr5g0006841 RchiOBHm_Chr5g0006891 RchiOBHm_Chr5g0007151 RchiOBHm_Chr5g0007321
rosa_laevigata	RLG00000031433 RLG00000031444
rosa_multiflora	Rmu_sc0001044.1_g000035 Rmu_sc0001838.1_g000001 Rmu_sc0003826.1_g000003
rosa_roxburghii	Rroxscaffold_1G00069210
rosa_rugosa	Rorug04G0424900
rosa_samantha	Rh5AG052600 Rh5AG053300 Rh5BG051500 Rh5BG052300 Rh5CG060200 Rh5CG060900 Rh5CG062300 Rh5DG050800
rosa_wichuraiana	Rw5G005140 Rw5G005200 Rw5G005510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	333
Acc65I	GGTACC	1 cut(s)	864
AccB1I	GGYRCC	1 cut(s)	864
AccBSI	CCGCTC	1 cut(s)	234
AccI	GTMKAC	1 cut(s)	1047
AciI	CCGC	5 cut(s)	116, 234, 322, 818, 953
AclWI	GGATC	2 cut(s)	856, 919
AcsI	RAATTY	1 cut(s)	804
AcvI	CACGTG	1 cut(s)	258
AfaI	GTAC	4 cut(s)	365, 866, 902, 1055
AfiI	CCNNNNNNNGG	1 cut(s)	1067
AflIII	ACRYGT	1 cut(s)	1050
AgsI	TTSAA	7 cut(s)	113, 361, 412, 507, 520, 898, 976
AjnI	CCWGG	2 cut(s)	779, 844
AluBI	AGCT	5 cut(s)	42, 545, 611, 767, 1076
AluI	AGCT	5 cut(s)	42, 545, 611, 767, 1076
Alw26I	GTCTC	2 cut(s)	257, 402
AlwI	GGATC	2 cut(s)	856, 919
Ama87I	CYCGRG	2 cut(s)	246, 1060
AoxI	GGCC	2 cut(s)	638, 840
ApaI	GGGCCC	1 cut(s)	844
ApeKI	GCWGC	5 cut(s)	599, 602, 950, 1004, 1076
ApoI	RAATTY	1 cut(s)	804
Asp718I	GGTACC	1 cut(s)	864
AspS9I	GGNCC	2 cut(s)	840, 841
AsuC2I	CCSGG	2 cut(s)	1061, 1062
AsuHPI	GGTGA	2 cut(s)	715, 811
AsuII	TTCGAA	1 cut(s)	1018
AvaI	CYCGRG	2 cut(s)	246, 1060
BaeGI	GKGCMC	1 cut(s)	844
BanI	GGYRCC	1 cut(s)	864
BanII	GRGCYC	1 cut(s)	844
BauI	CACGAG	1 cut(s)	606
BbrPI	CACGTG	1 cut(s)	258
BbsI	GAAGAC	1 cut(s)	1094
BbvI	GCAGC	5 cut(s)	586, 614, 937, 991, 1063
BccI	CCATC	3 cut(s)	340, 363, 900
BceAI	ACGGC	1 cut(s)	864
BciT130I	CCWGG	2 cut(s)	781, 846
BclI	TGATCA	1 cut(s)	1024
BcnI	CCSGG	2 cut(s)	1061, 1062
BcoDI	GTCTC	2 cut(s)	257, 402
BfaI	CTAG	2 cut(s)	11, 290
BfmI	CTRYAG	1 cut(s)	600
BfuAI	ACCTGC	1 cut(s)	333
BisI	GCNGC	5 cut(s)	600, 603, 951, 1005, 1077
BlsI	GCNGC	5 cut(s)	601, 604, 952, 1006, 1078
Bme1390I	CCNGG	4 cut(s)	781, 846, 1061, 1062
BmeT110I	CYCGRG	2 cut(s)	246, 1060
BmgT120I	GGNCC	2 cut(s)	840, 841
BmiI	GGNNCC	5 cut(s)	812, 841, 842, 843, 866
BmrFI	CCNGG	4 cut(s)	781, 846, 1061, 1062
BmsI	GCATC	3 cut(s)	86, 586, 951
BpiI	GAAGAC	1 cut(s)	1094
BpmI	CTGGAG	3 cut(s)	453, 473, 644
Bpu14I	TTCGAA	1 cut(s)	1018
BpuMI	CCSGG	2 cut(s)	1061, 1062
BsaAI	YACGTR	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	257
BsaJI	CCNNGG	2 cut(s)	844, 1060
Bsc4I	CCNNNNNNNGG	1 cut(s)	1067
Bse3DI	GCAATG	2 cut(s)	75, 831
BseBI	CCWGG	2 cut(s)	781, 846
BseDI	CCNNGG	2 cut(s)	844, 1060
BseGI	GGATG	4 cut(s)	80, 374, 601, 911
BseLI	CCNNNNNNNGG	1 cut(s)	1067
BseMI	GCAATG	2 cut(s)	75, 831
BseMII	CTCAG	3 cut(s)	339, 413, 551
BseRI	GAGGAG	1 cut(s)	430
BseSI	GKGCMC	1 cut(s)	844
BseXI	GCAGC	5 cut(s)	586, 614, 937, 991, 1063
BseYI	CCCAGC	1 cut(s)	836
BshFI	GGCC	2 cut(s)	640, 842
BshNI	GGYRCC	1 cut(s)	864
BsiHKCI	CYCGRG	2 cut(s)	246, 1060
BsiSI	CCGG	1 cut(s)	1061
BslFI	GGGAC	1 cut(s)	1043
BslI	CCNNNNNNNGG	1 cut(s)	1067
BsmAI	GTCTC	2 cut(s)	257, 402
BsmFI	GGGAC	1 cut(s)	1043
BsmI	GAATGC	1 cut(s)	996
BsnI	GGCC	2 cut(s)	640, 842
Bso31I	GGTCTC	1 cut(s)	257
BsoBI	CYCGRG	2 cut(s)	246, 1060
Bsp119I	TTCGAA	1 cut(s)	1018
Bsp120I	GGGCCC	1 cut(s)	840
Bsp1286I	GDGCHC	1 cut(s)	844
Bsp143I	GATC	3 cut(s)	848, 924, 1024
BspACI	CCGC	5 cut(s)	116, 234, 322, 818, 953
BspANI	GGCC	2 cut(s)	640, 842
BspCNI	CTCAG	3 cut(s)	340, 412, 552
BspLI	GGNNCC	5 cut(s)	812, 841, 842, 843, 866
BspMAI	CTGCAG	1 cut(s)	604
BspMI	ACCTGC	1 cut(s)	333
BspPI	GGATC	2 cut(s)	856, 919
BspT104I	TTCGAA	1 cut(s)	1018
BspT107I	GGYRCC	1 cut(s)	864
BspTNI	GGTCTC	1 cut(s)	257
BsrBI	CCGCTC	1 cut(s)	234
BsrDI	GCAATG	2 cut(s)	75, 831
BssECI	CCNNGG	2 cut(s)	844, 1060
BssMI	GATC	3 cut(s)	848, 924, 1024
BssNAI	GTATAC	1 cut(s)	1048
BssSI	CACGAG	1 cut(s)	606
Bst1107I	GTATAC	1 cut(s)	1048
Bst2BI	CACGAG	1 cut(s)	606
Bst2UI	CCWGG	2 cut(s)	781, 846
Bst4CI	ACNGT	1 cut(s)	869
Bst6I	CTCTTC	2 cut(s)	407, 567
BstBAI	YACGTR	1 cut(s)	258
BstBI	TTCGAA	1 cut(s)	1018
BstC8I	GCNNGC	4 cut(s)	75, 318, 322, 745
BstDEI	CTNAG	3 cut(s)	348, 399, 560
BstF5I	GGATG	4 cut(s)	80, 374, 601, 911
BstKTI	GATC	3 cut(s)	851, 927, 1027
BstMAI	GTCTC	2 cut(s)	257, 402
BstMBI	GATC	3 cut(s)	848, 924, 1024
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 608, 956
BstNI	CCWGG	2 cut(s)	781, 846
BstNSI	RCATGY	2 cut(s)	499, 1054
BstSCI	CCNGG	4 cut(s)	779, 844, 1059, 1060
BstSFI	CTRYAG	1 cut(s)	600
BstSLI	GKGCMC	1 cut(s)	844
BstV1I	GCAGC	5 cut(s)	586, 614, 937, 991, 1063
BstV2I	GAAGAC	1 cut(s)	1094
BstX2I	RGATCY	1 cut(s)	848
BstYI	RGATCY	1 cut(s)	848
BstZ17I	GTATAC	1 cut(s)	1048
BsuRI	GGCC	2 cut(s)	640, 842
BtsCI	GGATG	4 cut(s)	80, 374, 601, 911
BtsIMutI	CAGTG	1 cut(s)	895
BveI	ACCTGC	1 cut(s)	333
Cac8I	GCNNGC	4 cut(s)	75, 318, 322, 745
Cfr13I	GGNCC	2 cut(s)	840, 841
Cfr9I	CCCGGG	1 cut(s)	1060
CseI	GACGC	2 cut(s)	194, 202
Csp6I	GTAC	4 cut(s)	364, 865, 901, 1054
CviAII	CATG	8 cut(s)	132, 379, 442, 496, 726, 916, 1028, 1051
CviQI	GTAC	4 cut(s)	364, 865, 901, 1054
DdeI	CTNAG	3 cut(s)	348, 399, 560
DpnI	GATC	3 cut(s)	850, 926, 1026
DpnII	GATC	3 cut(s)	848, 924, 1024
Eam1104I	CTCTTC	2 cut(s)	407, 567
EarI	CTCTTC	2 cut(s)	407, 567
Eco24I	GRGCYC	1 cut(s)	844
Eco31I	GGTCTC	1 cut(s)	257
Eco72I	CACGTG	1 cut(s)	258
Eco88I	CYCGRG	2 cut(s)	246, 1060
EcoO109I	RGGNCCY	2 cut(s)	840, 841
EcoRII	CCWGG	2 cut(s)	779, 844
EcoT38I	GRGCYC	1 cut(s)	844
FaeI	CATG	8 cut(s)	135, 382, 445, 499, 729, 919, 1031, 1054
FaqI	GGGAC	1 cut(s)	1043
FatI	CATG	8 cut(s)	131, 378, 441, 495, 725, 915, 1027, 1050
FauI	CCCGC	1 cut(s)	329
FbaI	TGATCA	1 cut(s)	1024
FblI	GTMKAC	1 cut(s)	1047
Fnu4HI	GCNGC	5 cut(s)	600, 603, 951, 1005, 1077
FokI	GGATG	4 cut(s)	67, 381, 608, 918
FriOI	GRGCYC	1 cut(s)	844
Fsp4HI	GCNGC	5 cut(s)	600, 603, 951, 1005, 1077
FspBI	CTAG	2 cut(s)	11, 290
GluI	GCNGC	5 cut(s)	600, 603, 951, 1005, 1077
GsaI	CCCAGC	1 cut(s)	840
GsuI	CTGGAG	3 cut(s)	453, 473, 644
HaeIII	GGCC	2 cut(s)	640, 842
HapII	CCGG	1 cut(s)	1061
HgaI	GACGC	2 cut(s)	194, 202
Hin1II	CATG	8 cut(s)	135, 382, 445, 499, 729, 919, 1031, 1054
HinfI	GANTC	3 cut(s)	328, 438, 551
HpaII	CCGG	1 cut(s)	1061
HphI	GGTGA	2 cut(s)	715, 811
Hpy166II	GTNNAC	1 cut(s)	1048
Hpy188I	TCNGA	5 cut(s)	296, 349, 402, 556, 924
Hpy188III	TCNNGA	5 cut(s)	435, 470, 490, 623, 754
Hpy8I	GTNNAC	1 cut(s)	1048
HpyAV	CCTTC	2 cut(s)	788, 997
HpyCH4III	ACNGT	1 cut(s)	869
HpyCH4IV	ACGT	2 cut(s)	257, 1056
HpyCH4V	TGCA	9 cut(s)	22, 63, 73, 342, 602, 674, 716, 942, 1007
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 608, 956
HpyF3I	CTNAG	3 cut(s)	348, 399, 560
HpySE526I	ACGT	2 cut(s)	257, 1056
Hsp92II	CATG	8 cut(s)	135, 382, 445, 499, 729, 919, 1031, 1054
KpnI	GGTACC	1 cut(s)	868
Ksp22I	TGATCA	1 cut(s)	1024
Kzo9I	GATC	3 cut(s)	848, 924, 1024
LmnI	GCTCC	3 cut(s)	47, 459, 964
Lsp1109I	GCAGC	5 cut(s)	586, 614, 937, 991, 1063
LweI	GCATC	3 cut(s)	86, 586, 951
MaeI	CTAG	2 cut(s)	11, 290
MaeII	ACGT	2 cut(s)	257, 1056
MaeIII	GTNAC	1 cut(s)	769
MalI	GATC	3 cut(s)	850, 926, 1026
MbiI	CCGCTC	1 cut(s)	234
MboI	GATC	3 cut(s)	848, 924, 1024
MboII	GAAGA	4 cut(s)	327, 424, 584, 1099
MfeI	CAATTG	1 cut(s)	1008
MflI	RGATCY	1 cut(s)	848
MhlI	GDGCHC	1 cut(s)	844
MluCI	AATT	8 cut(s)	28, 507, 615, 634, 687, 735, 804, 1008
MseI	TTAA	3 cut(s)	32, 177, 786
MspA1I	CMGCKG	1 cut(s)	324
MspI	CCGG	1 cut(s)	1061
MspR9I	CCNGG	4 cut(s)	781, 846, 1061, 1062
MunI	CAATTG	1 cut(s)	1008
Mva1269I	GAATGC	1 cut(s)	996
MvaI	CCWGG	2 cut(s)	781, 846
MwoI	GCNNNNNNNGC	3 cut(s)	74, 608, 956
NciI	CCSGG	2 cut(s)	1061, 1062
NdeII	GATC	3 cut(s)	848, 924, 1024
NlaIII	CATG	8 cut(s)	135, 382, 445, 499, 729, 919, 1031, 1054
NlaIV	GGNNCC	5 cut(s)	812, 841, 842, 843, 866
NmuCI	GTSAC	1 cut(s)	769
NspI	RCATGY	2 cut(s)	499, 1054
NspV	TTCGAA	1 cut(s)	1018
PaeR7I	CTCGAG	1 cut(s)	246
PciI	ACATGT	1 cut(s)	1050
PctI	GAATGC	1 cut(s)	996
PfeI	GAWTC	3 cut(s)	328, 438, 551
PkrI	GCNGC	5 cut(s)	601, 604, 952, 1006, 1078
PmaCI	CACGTG	1 cut(s)	258
PmlI	CACGTG	1 cut(s)	258
Ppu21I	YACGTR	1 cut(s)	258
PscI	ACATGT	1 cut(s)	1050
Psp6I	CCWGG	2 cut(s)	779, 844
PspCI	CACGTG	1 cut(s)	258
PspFI	CCCAGC	1 cut(s)	836
PspGI	CCWGG	2 cut(s)	779, 844
PspN4I	GGNNCC	5 cut(s)	812, 841, 842, 843, 866
PspOMI	GGGCCC	1 cut(s)	840
PspPI	GGNCC	2 cut(s)	840, 841
PspXI	VCTCGAGB	1 cut(s)	246
PstI	CTGCAG	1 cut(s)	604
PsuI	RGATCY	1 cut(s)	848
RsaI	GTAC	4 cut(s)	365, 866, 902, 1055
RsaNI	GTAC	4 cut(s)	364, 865, 901, 1054
SaqAI	TTAA	3 cut(s)	32, 177, 786
SatI	GCNGC	5 cut(s)	600, 603, 951, 1005, 1077
Sau3AI	GATC	3 cut(s)	848, 924, 1024
Sau96I	GGNCC	2 cut(s)	840, 841
ScrFI	CCNGG	4 cut(s)	781, 846, 1061, 1062
SduI	GDGCHC	1 cut(s)	844
SfaNI	GCATC	3 cut(s)	86, 586, 951
SfcI	CTRYAG	1 cut(s)	600
Sfr274I	CTCGAG	1 cut(s)	246
SfuI	TTCGAA	1 cut(s)	1018
SlaI	CTCGAG	1 cut(s)	246
SmaI	CCCGGG	1 cut(s)	1062
SmlI	CTYRAG	1 cut(s)	246
SmoI	CTYRAG	1 cut(s)	246
Sse9I	AATT	8 cut(s)	28, 507, 615, 634, 687, 735, 804, 1008
SsiI	CCGC	5 cut(s)	116, 234, 322, 818, 953
SspMI	CTAG	2 cut(s)	11, 290
StyD4I	CCNGG	4 cut(s)	779, 844, 1059, 1060
TaaI	ACNGT	1 cut(s)	869
TaiI	ACGT	2 cut(s)	260, 1059
TaqI	TCGA	5 cut(s)	157, 219, 247, 436, 1018
TasI	AATT	8 cut(s)	28, 507, 615, 634, 687, 735, 804, 1008
TfiI	GAWTC	3 cut(s)	328, 438, 551
Tru1I	TTAA	3 cut(s)	32, 177, 786
Tru9I	TTAA	3 cut(s)	32, 177, 786
TscAI	CASTG	1 cut(s)	895
TseFI	GTSAC	1 cut(s)	769
TseI	GCWGC	5 cut(s)	599, 602, 950, 1004, 1076
Tsp45I	GTSAC	1 cut(s)	769
TspGWI	ACGGA	3 cut(s)	381, 419, 918
TspMI	CCCGGG	1 cut(s)	1060
TspRI	CASTG	1 cut(s)	895
XapI	RAATTY	1 cut(s)	804
XceI	RCATGY	2 cut(s)	499, 1054
XhoI	CTCGAG	1 cut(s)	246
XmaI	CCCGGG	1 cut(s)	1060
XmiI	GTMKAC	1 cut(s)	1047
XspI	CTAG	2 cut(s)	11, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.