Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003098

Physical Location & Seq

Genomic Coordinates Forward (+)

22585752 .. 22588969

Gene Structure 3218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G61250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCTAATCGTTATGATCCAAATCCTTTCGCTGAGGAAGAAGAAGTCAATCCTTTCGCTAATGCTAGAGGAGTTCCACCTGCGTCGAATTCGAGACTTTCGCCTTTGCCTCCAGAGCCTGTTGGTTTCGATTATGGTCGAACCGTAGACATTCCTCTTGACAGAGCTGGTACACAGGATTTGAAGAAGAAAGAGAAGGAACTCCAAGCCAAAGAAGCTGAGCTAAAACGACGAGAGCAGGACCTCAAACGGAAAGAAGATGCTGCTGCACGAGCTGGAATCGTTATTGAAGTGAAAAACTGGCCGCCTTTCTTCCCACTTATCCACCATGACATCGCAAACGAAATTCCGGTTCATCTCCAAAGACTACAGTATGTTACCTTTGCAACGTATTTGGGGTTGGTTCTTTGTCTTTTCTGGAATATCATCGCCGTTACTACAGCTTGGATCAAAGGAGAAGGAGTGACGATATGGCTTCTTGCCTTAATTTACTTCATAGCGGGTGTTCCAGGAGGCTATGTGTTATGGTATCGACCACTCTACCGTGCCTTCAGAACTGATAGTGCATTGAGCTTTGGATGGTTTTTCTTGTTCTATATGCTCCACATTGCTTTCTGCGTCTTTGCTGCAGTTGCTCCACCTGTCGTCTTCAAAGGAAAATCTCTTGCTGGGATCTTACCTGCAATAGATGTCTTAAGTGGTCAAGCAATTGTTGGGATATTCTACTTCATTGGGTTTGCATTTTTCTGCCTCGAATCAGTGGTTAGCATCTGGGTTATTCAGCAAGTGTATATGTACTTCCGAGGCAGCGGGAAACAAGATCAAATGAGACGGGAAGCAGCGAGAGGAGCCTTGAGAGCCGCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0097708 GO:0098657 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

289

Amino Acids

32.61

Weight (kDa)

8.87

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCAMP	PF04144	99 - 269	4.8e-58	SCAMP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11180 AT1G11180 AT1G11180 AT1G61250 AT1G61250 AT2G20840 AT2G20840 AT2G20840
fragaria_vesca	FvH4_3g04440
malus_domestica	MD05G1323100.v1.1 MD10G1300900.v1.1
prunus_persica	Prupe.4G039500_v2.0.a1 Prupe.4G039500_v2.0.a1
pyrus_communis	pycom05g29740 pycom10g25380
rosa_chinensis	RchiOBHm_Chr5g0006841 RchiOBHm_Chr5g0006891 RchiOBHm_Chr5g0007151 RchiOBHm_Chr5g0007321
rosa_laevigata	RLG00000031433 RLG00000031444
rosa_multiflora	Rmu_sc0001044.1_g000035 Rmu_sc0001838.1_g000001 Rmu_sc0003826.1_g000003
rosa_roxburghii	Rroxscaffold_1G00069210
rosa_rugosa	Rorug04G0424900
rosa_samantha	Rh5AG052600 Rh5AG053300 Rh5BG051500 Rh5BG052300 Rh5CG060200 Rh5CG060900 Rh5CG062300 Rh5DG050800
rosa_wichuraiana	Rw5G005140 Rw5G005200 Rw5G005510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	88
Acc36I	ACCTGC	2 cut(s)	88, 688
AccI	GTMKAC	1 cut(s)	147
AciI	CCGC	4 cut(s)	305, 500, 810, 861
AclWI	GGATC	3 cut(s)	11, 455, 680
AcoI	YGGCCR	1 cut(s)	302
AcsI	RAATTY	2 cut(s)	88, 345
AcuI	CTGAAG	1 cut(s)	535
AfaI	GTAC	2 cut(s)	172, 797
AflII	CTTAAG	1 cut(s)	694
AgsI	TTSAA	3 cut(s)	184, 290, 652
AjnI	CCWGG	1 cut(s)	508
AluBI	AGCT	6 cut(s)	167, 218, 223, 275, 443, 573
AluI	AGCT	6 cut(s)	167, 218, 223, 275, 443, 573
Alw26I	GTCTC	2 cut(s)	88, 823
AlwI	GGATC	3 cut(s)	11, 455, 680
AlwNI	CAGNNNCTG	1 cut(s)	119
AoxI	GGCC	1 cut(s)	302
ApeKI	GCWGC	5 cut(s)	263, 266, 626, 807, 839
ApoI	RAATTY	2 cut(s)	88, 345
AspS9I	GGNCC	1 cut(s)	241
AvaII	GGWCC	1 cut(s)	241
BarI	GAAGNNNNNNTAC	2 cut(s)	782, 814
BauI	CACGAG	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	640
BbvCI	CCTCAGC	1 cut(s)	33
BbvI	GCAGC	5 cut(s)	250, 253, 613, 819, 851
BccI	CCATC	1 cut(s)	573
BceAI	ACGGC	1 cut(s)	416
BciT130I	CCWGG	1 cut(s)	510
BcoDI	GTCTC	2 cut(s)	88, 823
BfaI	CTAG	1 cut(s)	66
BfmI	CTRYAG	3 cut(s)	368, 438, 627
BfrI	CTTAAG	1 cut(s)	694
BfuAI	ACCTGC	2 cut(s)	88, 688
BisI	GCNGC	7 cut(s)	264, 267, 305, 627, 808, 840, 861
BlpI	GCTNAGC	1 cut(s)	219
BlsI	GCNGC	7 cut(s)	265, 268, 306, 628, 809, 841, 862
Bme1390I	CCNGG	1 cut(s)	510
Bme18I	GGWCC	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	1 cut(s)	850
BmrFI	CCNGG	1 cut(s)	510
BmsI	GCATC	2 cut(s)	250, 777
BpiI	GAAGAC	1 cut(s)	640
BpmI	CTGGAG	1 cut(s)	96
Bpu10I	CCTNAGC	1 cut(s)	33
Bpu1102I	GCTNAGC	1 cut(s)	219
BsaBI	GATNNNNATC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	802
BsaWI	WCCGGW	1 cut(s)	349
BsaXI	ACNNNNNCTCC	4 cut(s)	447, 477, 504, 534
Bse1I	ACTGG	1 cut(s)	305
Bse3DI	GCAATG	1 cut(s)	606
Bse8I	GATNNNNATC	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	1 cut(s)	802
BseGI	GGATG	1 cut(s)	584
BseJI	GATNNNNATC	1 cut(s)	21
BseMI	GCAATG	1 cut(s)	606
BseMII	CTCAG	2 cut(s)	24, 210
BseNI	ACTGG	1 cut(s)	305
BseRI	GAGGAG	2 cut(s)	84, 861
BseXI	GCAGC	5 cut(s)	250, 253, 613, 819, 851
BseYI	CCCAGC	1 cut(s)	668
BsgI	GTGCAG	1 cut(s)	252
BshFI	GGCC	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	350
BsmAI	GTCTC	2 cut(s)	88, 823
BsmBI	CGTCTC	1 cut(s)	823
BsnI	GGCC	1 cut(s)	304
Bsp143I	GATC	4 cut(s)	16, 447, 672, 820
Bsp1720I	GCTNAGC	1 cut(s)	219
BspACI	CCGC	4 cut(s)	305, 500, 810, 861
BspANI	GGCC	1 cut(s)	304
BspCNI	CTCAG	2 cut(s)	25, 211
BspLI	GGNNCC	1 cut(s)	850
BspMAI	CTGCAG	1 cut(s)	631
BspMI	ACCTGC	2 cut(s)	88, 688
BspPI	GGATC	3 cut(s)	11, 455, 680
BspTI	CTTAAG	1 cut(s)	694
BsrDI	GCAATG	1 cut(s)	606
BsrI	ACTGG	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	802
BssMI	GATC	4 cut(s)	16, 447, 672, 820
BssSI	CACGAG	1 cut(s)	270
Bst2BI	CACGAG	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	3 cut(s)	145, 372, 545
BstAFI	CTTAAG	1 cut(s)	694
BstDEI	CTNAG	2 cut(s)	33, 219
BstF5I	GGATG	1 cut(s)	584
BstKTI	GATC	4 cut(s)	19, 450, 675, 823
BstMAI	GTCTC	2 cut(s)	88, 823
BstMBI	GATC	4 cut(s)	16, 447, 672, 820
BstMWI	GCNNNNNNNGC	6 cut(s)	115, 215, 272, 632, 848, 857
BstNI	CCWGG	1 cut(s)	510
BstSCI	CCNGG	1 cut(s)	508
BstSFI	CTRYAG	3 cut(s)	368, 438, 627
BstV1I	GCAGC	5 cut(s)	250, 253, 613, 819, 851
BstV2I	GAAGAC	1 cut(s)	640
BstX2I	RGATCY	1 cut(s)	672
BstYI	RGATCY	1 cut(s)	672
BsuRI	GGCC	1 cut(s)	304
BtgZI	GCGATG	2 cut(s)	319, 412
BtsCI	GGATG	1 cut(s)	584
BtsIMutI	CAGTG	1 cut(s)	765
BveI	ACCTGC	2 cut(s)	88, 688
CaiI	CAGNNNCTG	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	241
CseI	GACGC	2 cut(s)	72, 607
Csp6I	GTAC	2 cut(s)	171, 796
CviAII	CATG	1 cut(s)	329
CviQI	GTAC	2 cut(s)	171, 796
DdeI	CTNAG	2 cut(s)	33, 219
DpnI	GATC	4 cut(s)	18, 449, 674, 822
DpnII	GATC	4 cut(s)	16, 447, 672, 820
EaeI	YGGCCR	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	535
EcoO109I	RGGNCCY	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	508
Esp3I	CGTCTC	1 cut(s)	823
FaeI	CATG	1 cut(s)	332
FatI	CATG	1 cut(s)	328
FauI	CCCGC	2 cut(s)	493, 803
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	7 cut(s)	264, 267, 305, 627, 808, 840, 861
FokI	GGATG	1 cut(s)	591
Fsp4HI	GCNGC	7 cut(s)	264, 267, 305, 627, 808, 840, 861
FspBI	CTAG	1 cut(s)	66
GluI	GCNGC	7 cut(s)	264, 267, 305, 627, 808, 840, 861
GsaI	CCCAGC	1 cut(s)	672
GsuI	CTGGAG	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	304
HapII	CCGG	1 cut(s)	350
HgaI	GACGC	2 cut(s)	72, 607
Hin1II	CATG	1 cut(s)	332
HinfI	GANTC	2 cut(s)	279, 755
HpaII	CCGG	1 cut(s)	350
Hpy166II	GTNNAC	2 cut(s)	148, 173
Hpy188I	TCNGA	2 cut(s)	554, 803
Hpy188III	TCNNGA	4 cut(s)	93, 113, 158, 418
Hpy8I	GTNNAC	2 cut(s)	148, 173
Hpy99I	CGWCG	2 cut(s)	88, 234
HpyAV	CCTTC	3 cut(s)	190, 452, 559
HpyCH4III	ACNGT	3 cut(s)	145, 372, 545
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	6 cut(s)	269, 386, 566, 629, 683, 740
HpyF10VI	GCNNNNNNNGC	6 cut(s)	115, 215, 272, 632, 848, 857
HpyF3I	CTNAG	2 cut(s)	33, 219
HpySE526I	ACGT	1 cut(s)	389
Hsp92II	CATG	1 cut(s)	332
Kzo9I	GATC	4 cut(s)	16, 447, 672, 820
LmnI	GCTCC	3 cut(s)	606, 640, 848
Lsp1109I	GCAGC	5 cut(s)	250, 253, 613, 819, 851
LweI	GCATC	2 cut(s)	250, 777
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	1 cut(s)	389
MaeIII	GTNAC	3 cut(s)	376, 433, 463
MalI	GATC	4 cut(s)	18, 449, 674, 822
MboI	GATC	4 cut(s)	16, 447, 672, 820
MboII	GAAGA	7 cut(s)	50, 53, 196, 199, 269, 304, 640
MfeI	CAATTG	1 cut(s)	708
MflI	RGATCY	1 cut(s)	672
MluCI	AATT	4 cut(s)	88, 345, 486, 708
MnlI	CCTC	9 cut(s)	28, 62, 120, 165, 254, 506, 761, 797, 839
MseI	TTAA	2 cut(s)	485, 695
MspA1I	CMGCKG	2 cut(s)	810, 863
MspCI	CTTAAG	1 cut(s)	694
MspI	CCGG	1 cut(s)	350
MspR9I	CCNGG	1 cut(s)	510
MunI	CAATTG	1 cut(s)	708
MvaI	CCWGG	1 cut(s)	510
MwoI	GCNNNNNNNGC	6 cut(s)	115, 215, 272, 632, 848, 857
NdeII	GATC	4 cut(s)	16, 447, 672, 820
NlaIII	CATG	1 cut(s)	332
NlaIV	GGNNCC	1 cut(s)	850
NmuCI	GTSAC	1 cut(s)	463
PaqCI	CACCTGC	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	279, 755
PfoI	TCCNGGA	1 cut(s)	508
PkrI	GCNGC	7 cut(s)	265, 268, 306, 628, 809, 841, 862
PpuMI	RGGWCCY	1 cut(s)	241
Psp5II	RGGWCCY	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	508
PspFI	CCCAGC	1 cut(s)	668
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	1 cut(s)	850
PspPI	GGNCC	1 cut(s)	241
PspPPI	RGGWCCY	1 cut(s)	241
PstI	CTGCAG	1 cut(s)	631
PstNI	CAGNNNCTG	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	672
RsaI	GTAC	2 cut(s)	172, 797
RsaNI	GTAC	2 cut(s)	171, 796
SaqAI	TTAA	2 cut(s)	485, 695
SatI	GCNGC	7 cut(s)	264, 267, 305, 627, 808, 840, 861
Sau3AI	GATC	4 cut(s)	16, 447, 672, 820
Sau96I	GGNCC	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	510
SfaNI	GCATC	2 cut(s)	250, 777
SfcI	CTRYAG	3 cut(s)	368, 438, 627
SinI	GGWCC	1 cut(s)	241
SmlI	CTYRAG	2 cut(s)	694, 853
SmoI	CTYRAG	2 cut(s)	694, 853
Sse9I	AATT	4 cut(s)	88, 345, 486, 708
SsiI	CCGC	4 cut(s)	305, 500, 810, 861
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	508
TaaI	ACNGT	3 cut(s)	145, 372, 545
TaiI	ACGT	1 cut(s)	392
TaqI	TCGA	6 cut(s)	86, 92, 129, 139, 532, 753
TasI	AATT	4 cut(s)	88, 345, 486, 708
TatI	WGTACW	1 cut(s)	795
TauI	GCSGC	2 cut(s)	307, 863
TfiI	GAWTC	2 cut(s)	279, 755
Tru1I	TTAA	2 cut(s)	485, 695
Tru9I	TTAA	2 cut(s)	485, 695
TscAI	CASTG	1 cut(s)	765
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	5 cut(s)	263, 266, 626, 807, 839
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	3 cut(s)	344, 484, 718
TspGWI	ACGGA	1 cut(s)	265
TspRI	CASTG	1 cut(s)	765
Vha464I	CTTAAG	1 cut(s)	694
VpaK11BI	GGWCC	1 cut(s)	241
XapI	RAATTY	2 cut(s)	88, 345
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.