Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003098

Physical Location & Seq

Genomic Coordinates Reverse (-)

4287738 .. 4291465

Gene Structure 3728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG050800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCTGGTCGATTCGATAGTAACCCCTTCGCTGAAGAAGAGGAAGTCAATCCGTTCTCGAATCACGGAAGCGTTGCTCCTGCCAAGAACTCCAGACTGTCACCGCTGCCTCCAGAACGTGCTGGTTTCAACTATGGTATTGGTGAAACCGTCGATATACCTATTGATGGAAGTGGGGATTTGAAAAAGAGGGAGAGGGAACTCCAAGCTAAAGAAGCTGAACTGAGAAAGCGTGAAGAGATTGTAAAACGGAAAGAGGATGCTGCTGCACGAGCTGGAATTGTTCTTGAGGAAAAAAATTGGCCACCTTTCTTTCCACTTATCCATCATGATATTGCAAATGAAATACCAATTCATTTACAAAGGGTGATGTATGTTGCATTTACAACATGGTTAGGAATTGTTGCTTGCCTATTCTGGAATATAATAGCTGTGACTACTGCCTGGATTAAGGGTGAAGGGGTGAAAATTTGGTTCCTTGCGGTTATATATTTCATTGCTGGGGCCCCTGGATCTTATGTGTTGTGGTACCGTCCTCTTTACCGCGTGTTCAGGTCTGAGAGTGCATTGAAGTACGGATGGTTTTTCCTGTTCTACCTGTTTCACATTGGTTTCTGCATCTTTGCTGCGGTCGCTCCCCCTATAATCTTCAAAGGAAAATCTCTCACTGGCATTCTGGCTGCAATTGATGTTCTAGGCGATCATGCTTTGGTTGGGATCTTCTACTTCATTGGATTTGGCATGTTCTGTCTTGAATCAGTGCTTAGCATCTGGGTTATTCAGCAAGTATACATGTACTTCCGGGGAAGTGGTAAAGCTGCTGAAATGAGGCGTGAAGGAGCAAGACATGTTGCGAGGGCAGCAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0097708 GO:0098657 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

289

Amino Acids

32.64

Weight (kDa)

8.66

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCAMP	PF04144	98 - 269	2.6e-59	SCAMP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11180 AT1G11180 AT1G11180 AT1G61250 AT1G61250 AT2G20840 AT2G20840 AT2G20840
fragaria_vesca	FvH4_3g04440
malus_domestica	MD05G1323100.v1.1 MD10G1300900.v1.1
prunus_persica	Prupe.4G039500_v2.0.a1 Prupe.4G039500_v2.0.a1
pyrus_communis	pycom05g29740 pycom10g25380
rosa_chinensis	RchiOBHm_Chr5g0006841 RchiOBHm_Chr5g0006891 RchiOBHm_Chr5g0007151 RchiOBHm_Chr5g0007321
rosa_laevigata	RLG00000031433 RLG00000031444
rosa_multiflora	Rmu_sc0001044.1_g000035 Rmu_sc0001838.1_g000001 Rmu_sc0003826.1_g000003
rosa_roxburghii	Rroxscaffold_1G00069210
rosa_rugosa	Rorug04G0424900
rosa_samantha	Rh5AG052600 Rh5AG053300 Rh5BG051500 Rh5BG052300 Rh5CG060200 Rh5CG060900 Rh5CG062300 Rh5DG050800
rosa_wichuraiana	Rw5G005140 Rw5G005200 Rw5G005510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	528
AccB1I	GGYRCC	1 cut(s)	528
AccI	GTMKAC	1 cut(s)	789
AccII	CGCG	1 cut(s)	546
AciI	CCGC	4 cut(s)	104, 482, 544, 629
AclWI	GGATC	2 cut(s)	520, 725
AcoI	YGGCCR	1 cut(s)	302
AcsI	RAATTY	1 cut(s)	468
AcuI	CTGAAG	1 cut(s)	54
AfaI	GTAC	3 cut(s)	530, 575, 797
AfiI	CCNNNNNNNGG	1 cut(s)	167
AflIII	ACRYGT	2 cut(s)	792, 847
AgsI	TTSAA	5 cut(s)	130, 184, 571, 652, 755
AjnI	CCWGG	2 cut(s)	443, 508
AluBI	AGCT	5 cut(s)	209, 218, 275, 431, 818
AluI	AGCT	5 cut(s)	209, 218, 275, 431, 818
AlwI	GGATC	2 cut(s)	520, 725
AoxI	GGCC	2 cut(s)	302, 504
ApaI	GGGCCC	1 cut(s)	508
ApeKI	GCWGC	7 cut(s)	106, 263, 266, 626, 680, 818, 860
ApoI	RAATTY	1 cut(s)	468
Asp718I	GGTACC	1 cut(s)	528
AspS9I	GGNCC	2 cut(s)	504, 505
AsuC2I	CCSGG	1 cut(s)	803
AsuHPI	GGTGA	5 cut(s)	93, 155, 379, 467, 475
BaeGI	GKGCMC	1 cut(s)	508
BalI	TGGCCA	1 cut(s)	304
BanI	GGYRCC	1 cut(s)	528
BanII	GRGCYC	1 cut(s)	508
BauI	CACGAG	1 cut(s)	270
BbvI	GCAGC	6 cut(s)	93, 250, 253, 613, 667, 805
BccI	CCATC	3 cut(s)	161, 333, 573
BciT130I	CCWGG	2 cut(s)	445, 510
BcnI	CCSGG	1 cut(s)	803
BfaI	CTAG	1 cut(s)	695
BisI	GCNGC	7 cut(s)	107, 264, 267, 627, 681, 819, 861
BlpI	GCTNAGC	1 cut(s)	764
BlsI	GCNGC	7 cut(s)	108, 265, 268, 628, 682, 820, 862
Bme1390I	CCNGG	3 cut(s)	445, 510, 803
BmgT120I	GGNCC	2 cut(s)	504, 505
BmiI	GGNNCC	5 cut(s)	476, 505, 506, 507, 530
BmrFI	CCNGG	3 cut(s)	445, 510, 803
BmsI	GCATC	3 cut(s)	250, 627, 777
BpmI	CTGGAG	2 cut(s)	76, 96
Bpu1102I	GCTNAGC	1 cut(s)	764
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	803
BsaJI	CCNNGG	2 cut(s)	508, 802
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	673
Bse3DI	GCAATG	1 cut(s)	495
BseBI	CCWGG	2 cut(s)	445, 510
BseDI	CCNNGG	2 cut(s)	508, 802
BseGI	GGATG	2 cut(s)	265, 584
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMI	GCAATG	1 cut(s)	495
BseMII	CTCAG	2 cut(s)	215, 549
BseNI	ACTGG	1 cut(s)	673
BseSI	GKGCMC	1 cut(s)	508
BseXI	GCAGC	6 cut(s)	93, 250, 253, 613, 667, 805
BseYI	CCCAGC	1 cut(s)	500
BsgI	GTGCAG	1 cut(s)	252
Bsh1236I	CGCG	1 cut(s)	546
Bsh1285I	CGRYCG	1 cut(s)	633
BshFI	GGCC	2 cut(s)	304, 506
BshNI	GGYRCC	1 cut(s)	528
BsiEI	CGRYCG	1 cut(s)	633
BsiSI	CCGG	1 cut(s)	802
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	672
BsnI	GGCC	2 cut(s)	304, 506
Bsp120I	GGGCCC	1 cut(s)	504
Bsp1286I	GDGCHC	1 cut(s)	508
Bsp143I	GATC	3 cut(s)	512, 700, 717
Bsp1720I	GCTNAGC	1 cut(s)	764
BspACI	CCGC	4 cut(s)	104, 482, 544, 629
BspANI	GGCC	2 cut(s)	304, 506
BspCNI	CTCAG	2 cut(s)	216, 550
BspFNI	CGCG	1 cut(s)	546
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	5 cut(s)	476, 505, 506, 507, 530
BspPI	GGATC	2 cut(s)	520, 725
BspT107I	GGYRCC	1 cut(s)	528
BsrDI	GCAATG	1 cut(s)	495
BsrI	ACTGG	1 cut(s)	673
BssECI	CCNNGG	2 cut(s)	508, 802
BssMI	GATC	3 cut(s)	512, 700, 717
BssNAI	GTATAC	1 cut(s)	790
BssSI	CACGAG	1 cut(s)	270
Bst1107I	GTATAC	1 cut(s)	790
Bst2BI	CACGAG	1 cut(s)	270
Bst2UI	CCWGG	2 cut(s)	445, 510
Bst4CI	ACNGT	3 cut(s)	99, 151, 533
Bst6I	CTCTTC	2 cut(s)	33, 231
BstC8I	GCNNGC	1 cut(s)	409
BstDEI	CTNAG	3 cut(s)	224, 558, 764
BstF5I	GGATG	2 cut(s)	265, 584
BstFNI	CGCG	1 cut(s)	546
BstKTI	GATC	3 cut(s)	515, 703, 720
BstMBI	GATC	3 cut(s)	512, 700, 717
BstMCI	CGRYCG	1 cut(s)	633
BstMWI	GCNNNNNNNGC	4 cut(s)	215, 272, 632, 860
BstNI	CCWGG	2 cut(s)	445, 510
BstNSI	RCATGY	3 cut(s)	745, 796, 851
BstSCI	CCNGG	3 cut(s)	443, 508, 801
BstSLI	GKGCMC	1 cut(s)	508
BstUI	CGCG	1 cut(s)	546
BstV1I	GCAGC	6 cut(s)	93, 250, 253, 613, 667, 805
BstX2I	RGATCY	2 cut(s)	512, 717
BstYI	RGATCY	2 cut(s)	512, 717
BstZ17I	GTATAC	1 cut(s)	790
BsuRI	GGCC	2 cut(s)	304, 506
BtsCI	GGATG	2 cut(s)	265, 584
BtsIMutI	CAGTG	2 cut(s)	666, 765
Cac8I	GCNNGC	1 cut(s)	409
CciI	TCATGA	1 cut(s)	328
Cfr13I	GGNCC	2 cut(s)	504, 505
Csp6I	GTAC	3 cut(s)	529, 574, 796
CviAII	CATG	6 cut(s)	329, 390, 704, 742, 793, 848
CviJI	RGCY	9 cut(s)	5, 209, 218, 275, 304, 431, 506, 680, 818
CviKI_1	RGCY	9 cut(s)	5, 209, 218, 275, 304, 431, 506, 680, 818
CviQI	GTAC	3 cut(s)	529, 574, 796
DdeI	CTNAG	3 cut(s)	224, 558, 764
DpnI	GATC	3 cut(s)	514, 702, 719
DpnII	GATC	3 cut(s)	512, 700, 717
EaeI	YGGCCR	1 cut(s)	302
Eam1104I	CTCTTC	2 cut(s)	33, 231
EarI	CTCTTC	2 cut(s)	33, 231
Eco24I	GRGCYC	1 cut(s)	508
Eco57I	CTGAAG	1 cut(s)	54
EcoO109I	RGGNCCY	2 cut(s)	504, 505
EcoRII	CCWGG	2 cut(s)	443, 508
EcoT38I	GRGCYC	1 cut(s)	508
FaeI	CATG	6 cut(s)	332, 393, 707, 745, 796, 851
FatI	CATG	6 cut(s)	328, 389, 703, 741, 792, 847
FblI	GTMKAC	1 cut(s)	789
Fnu4HI	GCNGC	7 cut(s)	107, 264, 267, 627, 681, 819, 861
FokI	GGATG	2 cut(s)	272, 591
FriOI	GRGCYC	1 cut(s)	508
Fsp4HI	GCNGC	7 cut(s)	107, 264, 267, 627, 681, 819, 861
FspBI	CTAG	1 cut(s)	695
GluI	GCNGC	7 cut(s)	107, 264, 267, 627, 681, 819, 861
GsaI	CCCAGC	1 cut(s)	504
GsuI	CTGGAG	2 cut(s)	76, 96
HaeIII	GGCC	2 cut(s)	304, 506
HapII	CCGG	1 cut(s)	802
Hin1II	CATG	6 cut(s)	332, 393, 707, 745, 796, 851
HinfI	GANTC	3 cut(s)	12, 61, 755
HpaII	CCGG	1 cut(s)	802
HphI	GGTGA	5 cut(s)	93, 155, 379, 467, 475
Hpy166II	GTNNAC	1 cut(s)	790
Hpy188I	TCNGA	1 cut(s)	559
Hpy188III	TCNNGA	7 cut(s)	58, 93, 113, 287, 329, 418, 752
Hpy8I	GTNNAC	1 cut(s)	790
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	3 cut(s)	37, 452, 830
HpyCH4III	ACNGT	3 cut(s)	99, 151, 533
HpyCH4IV	ACGT	1 cut(s)	118
HpyCH4V	TGCA	6 cut(s)	269, 338, 380, 566, 618, 683
HpyF10VI	GCNNNNNNNGC	4 cut(s)	215, 272, 632, 860
HpyF3I	CTNAG	3 cut(s)	224, 558, 764
HpySE526I	ACGT	1 cut(s)	118
Hsp92II	CATG	6 cut(s)	332, 393, 707, 745, 796, 851
KpnI	GGTACC	1 cut(s)	532
Kzo9I	GATC	3 cut(s)	512, 700, 717
LmnI	GCTCC	3 cut(s)	82, 640, 839
Lsp1109I	GCAGC	6 cut(s)	93, 250, 253, 613, 667, 805
LweI	GCATC	3 cut(s)	250, 627, 777
MaeI	CTAG	1 cut(s)	695
MaeII	ACGT	1 cut(s)	118
MaeIII	GTNAC	3 cut(s)	20, 99, 433
MalI	GATC	3 cut(s)	514, 702, 719
MboI	GATC	3 cut(s)	512, 700, 717
MboII	GAAGA	5 cut(s)	47, 50, 248, 640, 712
MfeI	CAATTG	1 cut(s)	684
MflI	RGATCY	2 cut(s)	512, 717
MhlI	GDGCHC	1 cut(s)	508
MlsI	TGGCCA	1 cut(s)	304
MluCI	AATT	6 cut(s)	279, 298, 351, 399, 468, 684
MluNI	TGGCCA	1 cut(s)	304
MnlI	CCTC	9 cut(s)	34, 120, 183, 189, 250, 283, 546, 822, 849
Mox20I	TGGCCA	1 cut(s)	304
MscI	TGGCCA	1 cut(s)	304
MseI	TTAA	1 cut(s)	450
Msp20I	TGGCCA	1 cut(s)	304
MspA1I	CMGCKG	1 cut(s)	106
MspI	CCGG	1 cut(s)	802
MspR9I	CCNGG	3 cut(s)	445, 510, 803
MunI	CAATTG	1 cut(s)	684
Mva1269I	GAATGC	1 cut(s)	672
MvaI	CCWGG	2 cut(s)	445, 510
MvnI	CGCG	1 cut(s)	546
MwoI	GCNNNNNNNGC	4 cut(s)	215, 272, 632, 860
NciI	CCSGG	1 cut(s)	803
NdeII	GATC	3 cut(s)	512, 700, 717
NlaIII	CATG	6 cut(s)	332, 393, 707, 745, 796, 851
NlaIV	GGNNCC	5 cut(s)	476, 505, 506, 507, 530
NmuCI	GTSAC	2 cut(s)	99, 433
NspI	RCATGY	3 cut(s)	745, 796, 851
PagI	TCATGA	1 cut(s)	328
PciI	ACATGT	2 cut(s)	792, 847
PctI	GAATGC	1 cut(s)	672
PfeI	GAWTC	3 cut(s)	12, 61, 755
PkrI	GCNGC	7 cut(s)	108, 265, 268, 628, 682, 820, 862
PscI	ACATGT	2 cut(s)	792, 847
Psp6I	CCWGG	2 cut(s)	443, 508
PspFI	CCCAGC	1 cut(s)	500
PspGI	CCWGG	2 cut(s)	443, 508
PspN4I	GGNNCC	5 cut(s)	476, 505, 506, 507, 530
PspOMI	GGGCCC	1 cut(s)	504
PspPI	GGNCC	2 cut(s)	504, 505
PsuI	RGATCY	2 cut(s)	512, 717
RsaI	GTAC	3 cut(s)	530, 575, 797
RsaNI	GTAC	3 cut(s)	529, 574, 796
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	7 cut(s)	107, 264, 267, 627, 681, 819, 861
Sau3AI	GATC	3 cut(s)	512, 700, 717
Sau96I	GGNCC	2 cut(s)	504, 505
ScrFI	CCNGG	3 cut(s)	445, 510, 803
SduI	GDGCHC	1 cut(s)	508
SfaNI	GCATC	3 cut(s)	250, 627, 777
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	6 cut(s)	279, 298, 351, 399, 468, 684
SsiI	CCGC	4 cut(s)	104, 482, 544, 629
SspMI	CTAG	1 cut(s)	695
StyD4I	CCNGG	3 cut(s)	443, 508, 801
TaaI	ACNGT	3 cut(s)	99, 151, 533
TaiI	ACGT	1 cut(s)	121
TaqI	TCGA	4 cut(s)	10, 15, 59, 153
TasI	AATT	6 cut(s)	279, 298, 351, 399, 468, 684
TatI	WGTACW	1 cut(s)	795
TfiI	GAWTC	3 cut(s)	12, 61, 755
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TscAI	CASTG	2 cut(s)	673, 765
TseFI	GTSAC	2 cut(s)	99, 433
TseI	GCWGC	7 cut(s)	106, 263, 266, 626, 680, 818, 860
Tsp45I	GTSAC	2 cut(s)	99, 433
TspDTI	ATGAA	4 cut(s)	344, 357, 484, 718
TspGWI	ACGGA	4 cut(s)	42, 81, 265, 591
TspRI	CASTG	2 cut(s)	673, 765
XapI	RAATTY	1 cut(s)	468
XceI	RCATGY	3 cut(s)	745, 796, 851
XmiI	GTMKAC	1 cut(s)	789
XspI	CTAG	1 cut(s)	695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.