Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003098

Physical Location & Seq

Genomic Coordinates Reverse (-)

58413592 .. 58414556

Gene Structure 965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0424900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAAAGAGACCAACGTGGTTCCGGCAAACAGTACCAAGACCAACGTGGTTCCGGCGAACAGCATGGAGACCAACGTCGTTCCGGGCATCAGCACAGAGACCAACGTCATTCCAGCGACTACAGAGACCAACATCTTCAGCTCCATCAACAACATCGGTTTCTCATTTCACAACACCCAACCTTCCCGCTCCCTTCAGTCCATCAACGTCGTTTGGTCGTCGTCGGTAATGGCCAACCTGGCTGTATCTCAGCTTGAGCCTGCGGAAGAAAAGCAAGGAACGACCGAAGAAAATCCTGAGGAACAAGGCAATCCACCTGCCTATCGCTGGTGGGCTGATCGCGATTATCTCGGAAACAAATACACTCAGATTGGTAACGGGGACTCATACTCGAGAGTACCGAGGGTGCTGGAACTGAGTTACCCAGTGGCAGTATCACGCTATGCCCTTGCTCCCGATTTCGTCCCTTCTTCTTCAACTGCCTGTGACCAGCACCAGCATCAACCTCCAAAGCGTCCTTCACCACTCTACAAGACGGTATTATGTCGGTACAAAAGTTCTTGCTCGAAGGGAGACGGGTGTAACTTTGCCCATACTCTTCACGAGATTCGTAGGACACCCATGTATGACGGAGATTGCAAGTTCGGAAGCCGTTGTCCGTATGGCCGTAATTGCTTTTACCGTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0097708 GO:0098657 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

229

Amino Acids

25.53

Weight (kDa)

7.6

Isoelectric Point (pI)

64.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11180 AT1G11180 AT1G11180 AT1G61250 AT1G61250 AT2G20840 AT2G20840 AT2G20840
fragaria_vesca	FvH4_3g04440
malus_domestica	MD05G1323100.v1.1 MD10G1300900.v1.1
prunus_persica	Prupe.4G039500_v2.0.a1 Prupe.4G039500_v2.0.a1
pyrus_communis	pycom05g29740 pycom10g25380
rosa_chinensis	RchiOBHm_Chr5g0006841 RchiOBHm_Chr5g0006891 RchiOBHm_Chr5g0007151 RchiOBHm_Chr5g0007321
rosa_laevigata	RLG00000031433 RLG00000031444
rosa_multiflora	Rmu_sc0001044.1_g000035 Rmu_sc0001838.1_g000001 Rmu_sc0003826.1_g000003
rosa_roxburghii	Rroxscaffold_1G00069210
rosa_rugosa	Rorug04G0424900
rosa_samantha	Rh5AG052600 Rh5AG053300 Rh5BG051500 Rh5BG052300 Rh5CG060200 Rh5CG060900 Rh5CG062300 Rh5DG050800
rosa_wichuraiana	Rw5G005140 Rw5G005200 Rw5G005510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	325
Acc36I	ACCTGC	1 cut(s)	325
AccBSI	CCGCTC	1 cut(s)	189
AccII	CGCG	1 cut(s)	342
AciI	CCGC	2 cut(s)	187, 263
AcoI	YGGCCR	2 cut(s)	231, 664
AcuI	CTGAAG	2 cut(s)	121, 179
AfaI	GTAC	3 cut(s)	34, 399, 551
AfiI	CCNNNNNNNGG	1 cut(s)	327
AgsI	TTSAA	1 cut(s)	477
AjnI	CCWGG	1 cut(s)	237
AjuI	GAANNNNNNNTTGG	2 cut(s)	502, 534
AluBI	AGCT	2 cut(s)	141, 253
AluI	AGCT	2 cut(s)	141, 253
Alw26I	GTCTC	5 cut(s)	2, 62, 92, 119, 567
Ama87I	CYCGRG	1 cut(s)	391
AoxI	GGCC	2 cut(s)	231, 664
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	1 cut(s)	513
AvaI	CYCGRG	1 cut(s)	391
AxyI	CCTNAGG	1 cut(s)	297
BaeI	ACNNNNGTAYC	2 cut(s)	541, 574
BalI	TGGCCA	1 cut(s)	233
BauI	CACGAG	1 cut(s)	602
BccI	CCATC	2 cut(s)	152, 209
BceAI	ACGGC	2 cut(s)	636, 651
BciT130I	CCWGG	1 cut(s)	239
BcnI	CCSGG	1 cut(s)	84
BcoDI	GTCTC	5 cut(s)	2, 62, 92, 119, 567
BfmI	CTRYAG	1 cut(s)	120
BfuAI	ACCTGC	1 cut(s)	325
BglI	GCCNNNNNGGC	1 cut(s)	239
Bme1390I	CCNGG	2 cut(s)	84, 239
BmeT110I	CYCGRG	1 cut(s)	391
BmiI	GGNNCC	2 cut(s)	21, 51
BmrFI	CCNGG	2 cut(s)	84, 239
BmrI	ACTGGG	1 cut(s)	419
BmsI	GCATC	2 cut(s)	96, 508
BmuI	ACTGGG	1 cut(s)	419
BoxI	GACNNNNGTC	2 cut(s)	74, 104
BpuEI	CTTGAG	1 cut(s)	275
BpuMI	CCSGG	1 cut(s)	84
BsaI	GGTCTC	4 cut(s)	2, 62, 92, 119
BsaJI	CCNNGG	1 cut(s)	401
Bsc4I	CCNNNNNNNGG	1 cut(s)	327
Bse1I	ACTGG	1 cut(s)	425
Bse21I	CCTNAGG	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	1 cut(s)	401
BseLI	CCNNNNNNNGG	1 cut(s)	327
BseMII	CTCAG	4 cut(s)	263, 288, 380, 407
BseNI	ACTGG	1 cut(s)	425
Bsh1236I	CGCG	1 cut(s)	342
Bsh1285I	CGRYCG	1 cut(s)	285
BshFI	GGCC	2 cut(s)	233, 666
BsiEI	CGRYCG	1 cut(s)	285
BsiHKCI	CYCGRG	1 cut(s)	391
BsiSI	CCGG	3 cut(s)	23, 53, 83
BslFI	GGGAC	2 cut(s)	395, 449
BslI	CCNNNNNNNGG	1 cut(s)	327
BsmAI	GTCTC	5 cut(s)	2, 62, 92, 119, 567
BsmBI	CGTCTC	1 cut(s)	567
BsmFI	GGGAC	2 cut(s)	395, 449
BsnI	GGCC	2 cut(s)	233, 666
Bso31I	GGTCTC	4 cut(s)	2, 62, 92, 119
BsoBI	CYCGRG	1 cut(s)	391
Bsp143I	GATC	1 cut(s)	337
Bsp68I	TCGCGA	1 cut(s)	342
BspACI	CCGC	2 cut(s)	187, 263
BspANI	GGCC	2 cut(s)	233, 666
BspCNI	CTCAG	4 cut(s)	262, 289, 379, 408
BspFNI	CGCG	1 cut(s)	342
BspLI	GGNNCC	2 cut(s)	21, 51
BspMI	ACCTGC	1 cut(s)	325
BspTNI	GGTCTC	4 cut(s)	2, 62, 92, 119
BsrBI	CCGCTC	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	425
BssECI	CCNNGG	1 cut(s)	401
BssMI	GATC	1 cut(s)	337
BssSI	CACGAG	1 cut(s)	602
Bst2BI	CACGAG	1 cut(s)	602
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	3 cut(s)	32, 538, 683
Bst6I	CTCTTC	1 cut(s)	603
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	4 cut(s)	249, 297, 366, 416
BstFNI	CGCG	1 cut(s)	342
BstKTI	GATC	1 cut(s)	340
BstMAI	GTCTC	5 cut(s)	2, 62, 92, 119, 567
BstMBI	GATC	1 cut(s)	337
BstMCI	CGRYCG	1 cut(s)	285
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 672
BstNI	CCWGG	1 cut(s)	239
BstPAI	GACNNNNGTC	2 cut(s)	74, 104
BstSCI	CCNGG	2 cut(s)	82, 237
BstSFI	CTRYAG	1 cut(s)	120
BstUI	CGCG	1 cut(s)	342
Bsu36I	CCTNAGG	1 cut(s)	297
BsuRI	GGCC	2 cut(s)	233, 666
BtsIMutI	CAGTG	1 cut(s)	432
BtuMI	TCGCGA	1 cut(s)	342
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	261
CseI	GACGC	1 cut(s)	503
Csp6I	GTAC	3 cut(s)	33, 398, 550
CviAII	CATG	2 cut(s)	64, 622
CviJI	RGCY	8 cut(s)	141, 233, 242, 253, 259, 335, 651, 666
CviKI_1	RGCY	8 cut(s)	141, 233, 242, 253, 259, 335, 651, 666
CviQI	GTAC	3 cut(s)	33, 398, 550
DdeI	CTNAG	4 cut(s)	249, 297, 366, 416
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
EaeI	YGGCCR	2 cut(s)	231, 664
Eam1104I	CTCTTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	603
Eco31I	GGTCTC	4 cut(s)	2, 62, 92, 119
Eco57I	CTGAAG	2 cut(s)	121, 179
Eco81I	CCTNAGG	1 cut(s)	297
Eco88I	CYCGRG	1 cut(s)	391
EcoRII	CCWGG	1 cut(s)	237
Esp3I	CGTCTC	1 cut(s)	567
FaeI	CATG	2 cut(s)	67, 625
FaiI	YATR	8 cut(s)	65, 388, 444, 544, 594, 623, 627, 663
FaqI	GGGAC	2 cut(s)	395, 449
FatI	CATG	2 cut(s)	63, 621
FauI	CCCGC	1 cut(s)	194
HaeIII	GGCC	2 cut(s)	233, 666
HapII	CCGG	3 cut(s)	23, 53, 83
HgaI	GACGC	1 cut(s)	503
Hin1II	CATG	2 cut(s)	67, 625
HinfI	GANTC	2 cut(s)	383, 607
HpaII	CCGG	3 cut(s)	23, 53, 83
HphI	GGTGA	1 cut(s)	513
Hpy188I	TCNGA	3 cut(s)	353, 369, 647
Hpy188III	TCNNGA	5 cut(s)	296, 341, 393, 455, 602
Hpy99I	CGWCG	4 cut(s)	80, 212, 223, 226
HpyAV	CCTTC	5 cut(s)	192, 203, 477, 528, 562
HpyCH4III	ACNGT	3 cut(s)	32, 538, 683
HpyCH4IV	ACGT	5 cut(s)	15, 45, 75, 105, 207
HpyCH4V	TGCA	1 cut(s)	639
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 672
HpyF3I	CTNAG	4 cut(s)	249, 297, 366, 416
HpySE526I	ACGT	5 cut(s)	15, 45, 75, 105, 207
Hsp92II	CATG	2 cut(s)	67, 625
Kzo9I	GATC	1 cut(s)	337
LmnI	GCTCC	3 cut(s)	146, 194, 457
LweI	GCATC	2 cut(s)	96, 508
MaeII	ACGT	5 cut(s)	15, 45, 75, 105, 207
MaeIII	GTNAC	4 cut(s)	374, 419, 485, 581
MalI	GATC	1 cut(s)	339
MbiI	CCGCTC	1 cut(s)	189
MboI	GATC	1 cut(s)	337
MboII	GAAGA	6 cut(s)	127, 278, 299, 462, 465, 590
MlsI	TGGCCA	1 cut(s)	233
MluCI	AATT	1 cut(s)	670
MluNI	TGGCCA	1 cut(s)	233
MlyI	GAGTC	1 cut(s)	377
MnlI	CCTC	3 cut(s)	292, 396, 516
Mox20I	TGGCCA	1 cut(s)	233
MscI	TGGCCA	1 cut(s)	233
Msp20I	TGGCCA	1 cut(s)	233
MspI	CCGG	3 cut(s)	23, 53, 83
MspR9I	CCNGG	2 cut(s)	84, 239
MvaI	CCWGG	1 cut(s)	239
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	2 cut(s)	239, 672
NciI	CCSGG	1 cut(s)	84
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	2 cut(s)	67, 625
NlaIV	GGNNCC	2 cut(s)	21, 51
NmuCI	GTSAC	1 cut(s)	485
NruI	TCGCGA	1 cut(s)	342
PaeR7I	CTCGAG	1 cut(s)	391
PaqCI	CACCTGC	1 cut(s)	325
PcsI	WCGNNNNNNNCGW	1 cut(s)	398
PfeI	GAWTC	1 cut(s)	607
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
PshAI	GACNNNNGTC	2 cut(s)	74, 104
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	2 cut(s)	21, 51
RruI	TCGCGA	1 cut(s)	342
RsaI	GTAC	3 cut(s)	34, 399, 551
RsaNI	GTAC	3 cut(s)	33, 398, 550
Sau3AI	GATC	1 cut(s)	337
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	2 cut(s)	84, 239
SfaNI	GCATC	2 cut(s)	96, 508
SfcI	CTRYAG	1 cut(s)	120
Sfr274I	CTCGAG	1 cut(s)	391
SlaI	CTCGAG	1 cut(s)	391
SmlI	CTYRAG	2 cut(s)	254, 391
SmoI	CTYRAG	2 cut(s)	254, 391
Sse9I	AATT	1 cut(s)	670
SsiI	CCGC	2 cut(s)	187, 263
StyD4I	CCNGG	2 cut(s)	82, 237
TaaI	ACNGT	3 cut(s)	32, 538, 683
TaiI	ACGT	5 cut(s)	18, 48, 78, 108, 210
TaqI	TCGA	2 cut(s)	392, 566
TaqII	GACCGA	1 cut(s)	299
TasI	AATT	1 cut(s)	670
TfiI	GAWTC	1 cut(s)	607
TscAI	CASTG	1 cut(s)	432
TseFI	GTSAC	1 cut(s)	485
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	645, 648
TspRI	CASTG	1 cut(s)	432
XcmI	CCANNNNNNNNNTGG	1 cut(s)	43
XhoI	CTCGAG	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.