AT1G11380

PLAC8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008620
Physical Location & Seq
Forward (+)
3832563 .. 3834462
1900 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G11380.1

Sequence Viewer

Length: 765 bp
ATGGCGGATTTGGATAAACTCGAGGGTGGAGGAGGAGGAGGAGCCGTCGTAATCGCCGACATTAGAGCCGATGAAGGCGGAGGAGCGGTGGAGGAGAGGGAGAGGTTAACGGAACTTGAAGGAATTTCTGTGTTGGATTTCGATTTGCTTTGCTCAACGGTTGCGCTTCAGACTCAGGGGAAATGGAGGAAGCTTGAGAGCTCGGAGGGAGAAGATGCGACGGAGGATGATTATGGCGGTGGCGTTTTACGGCTTTGGGAAGGCGATGTTATGGATTGCTTTGAAGATCGTCATCTCTGTATCGAATCTGCTTGCTGTCCATGCTACAGATTCGGGAAAAACATGACAAGGACTGGTTTTGGTTCTTGCTTTCTTCAGGGTGCTGTTCATATGATTCTTATTGCCGGTTTCTTATTCAATGTTGTTGCTTTTGCTGTAACTAAGAGGCACTGCTTTCTCTATCTGGCTATTGCTTTCGTTCTTTTGATTGGATCCTACTTGGGTTTCTTCCGTATGTTGATAAGAAGGAAGTTTAATATTAGAGGTACTGATAGTTTCTTGGACGATTTTATCCACCATCTCGTATGTCCATTCTGTACATTAACTCAGGAATCTAAAACTCTGGAGATGAACAATGTTCATGATGGTATCTGGCATGGTCGAGGAGACACTCTATGTATAGGCGGCTATTCCGAAGGAAAAGCTTTTCTCGAGCTGCATTCGCCTCCAGTTATTGCCTCAACAATGTCATCATCTCAACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

254

Amino Acids

27.94

Weight (kDa)

4.99

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 86 - 206 1.9e-19 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 86
AciI CCGC 5 cut(s) 5, 78, 86, 237, 684
AclWI GGATC 2 cut(s) 486, 499
AcsI RAATTY 1 cut(s) 123
AcuI CTGAAG 2 cut(s) 152, 359
AfaI GTAC 2 cut(s) 547, 598
AgsI TTSAA 3 cut(s) 119, 284, 418
AluBI AGCT 4 cut(s) 193, 201, 704, 715
AluI AGCT 4 cut(s) 193, 201, 704, 715
Alw21I GWGCWC 1 cut(s) 203
Alw26I GTCTC 1 cut(s) 660
AlwI GGATC 2 cut(s) 486, 499
Ama87I CYCGRG 2 cut(s) 20, 710
ApeKI GCWGC 1 cut(s) 715
ApoI RAATTY 1 cut(s) 123
AspLEI GCGC 1 cut(s) 166
AvaI CYCGRG 2 cut(s) 20, 710
BamHI GGATCC 1 cut(s) 491
BanII GRGCYC 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 203
BbvI GCAGC 1 cut(s) 702
BccI CCATC 2 cut(s) 585, 638
BceAI ACGGC 2 cut(s) 29, 266
BcoDI GTCTC 1 cut(s) 660
BfmI CTRYAG 1 cut(s) 325
BisI GCNGC 2 cut(s) 685, 716
BlsI GCNGC 2 cut(s) 686, 717
BmeT110I CYCGRG 2 cut(s) 20, 710
BmiI GGNNCC 2 cut(s) 43, 493
BmsI GCATC 1 cut(s) 205
BpmI CTGGAG 2 cut(s) 644, 711
BpuEI CTTGAG 1 cut(s) 215
BsaBI GATNNNNATC 1 cut(s) 291
BsaXI ACNNNNNCTCC 6 cut(s) 30, 33, 60, 63, 72, 102
Bse118I RCCGGY 1 cut(s) 404
Bse1I ACTGG 2 cut(s) 358, 728
Bse8I GATNNNNATC 1 cut(s) 291
BseGI GGATG 1 cut(s) 232
BseJI GATNNNNATC 1 cut(s) 291
BseMII CTCAG 2 cut(s) 188, 620
BseNI ACTGG 2 cut(s) 358, 728
BseRI GAGGAG 7 cut(s) 45, 48, 51, 54, 96, 107, 678
BseXI GCAGC 1 cut(s) 702
BsiHKAI GWGCWC 1 cut(s) 203
BsiHKCI CYCGRG 2 cut(s) 20, 710
BsiSI CCGG 1 cut(s) 405
BsmAI GTCTC 1 cut(s) 660
BsmI GAATGC 1 cut(s) 718
BsoBI CYCGRG 2 cut(s) 20, 710
Bsp1286I GDGCHC 1 cut(s) 203
Bsp1407I TGTACA 1 cut(s) 596
Bsp143I GATC 2 cut(s) 286, 491
BspACI CCGC 5 cut(s) 5, 78, 86, 237, 684
BspCNI CTCAG 2 cut(s) 187, 619
BspHI TCATGA 1 cut(s) 640
BspLI GGNNCC 2 cut(s) 43, 493
BspPI GGATC 2 cut(s) 486, 499
BsrBI CCGCTC 1 cut(s) 86
BsrFI RCCGGY 1 cut(s) 404
BsrGI TGTACA 1 cut(s) 596
BsrI ACTGG 2 cut(s) 358, 728
BssAI RCCGGY 1 cut(s) 404
BssMI GATC 2 cut(s) 286, 491
Bst4CI ACNGT 1 cut(s) 160
BstAUI TGTACA 1 cut(s) 596
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 3 cut(s) 174, 441, 606
BstF5I GGATG 1 cut(s) 232
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 2 cut(s) 289, 494
BstMAI GTCTC 1 cut(s) 660
BstMBI GATC 2 cut(s) 286, 491
BstMWI GCNNNNNNNGC 2 cut(s) 321, 721
BstSFI CTRYAG 1 cut(s) 325
BstV1I GCAGC 1 cut(s) 702
BstX2I RGATCY 1 cut(s) 491
BstYI RGATCY 1 cut(s) 491
BtgZI GCGATG 1 cut(s) 279
BtsCI GGATG 1 cut(s) 232
BtsI GCAGTG 1 cut(s) 448
BtsIMutI CAGTG 1 cut(s) 448
Cac8I GCNNGC 1 cut(s) 313
CciI TCATGA 1 cut(s) 640
CfoI GCGC 1 cut(s) 166
Cfr10I RCCGGY 1 cut(s) 404
Csp6I GTAC 2 cut(s) 546, 597
CviAII CATG 4 cut(s) 321, 343, 641, 656
CviJI RGCY 9 cut(s) 44, 68, 193, 201, 253, 467, 687, 704, 715
CviKI_1 RGCY 9 cut(s) 44, 68, 193, 201, 253, 467, 687, 704, 715
CviQI GTAC 2 cut(s) 546, 597
DdeI CTNAG 3 cut(s) 174, 441, 606
DpnI GATC 2 cut(s) 288, 493
DpnII GATC 2 cut(s) 286, 491
EciI GGCGGA 2 cut(s) 20, 93
Ecl136II GAGCTC 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 203
Eco53kI GAGCTC 1 cut(s) 201
Eco57I CTGAAG 2 cut(s) 152, 359
Eco88I CYCGRG 2 cut(s) 20, 710
EcoICRI GAGCTC 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 203
FaeI CATG 4 cut(s) 324, 346, 644, 659
FatI CATG 4 cut(s) 320, 342, 640, 655
FauNDI CATATG 1 cut(s) 390
Fnu4HI GCNGC 2 cut(s) 685, 716
FokI GGATG 1 cut(s) 239
FriOI GRGCYC 1 cut(s) 203
Fsp4HI GCNGC 2 cut(s) 685, 716
GlaI GCGC 1 cut(s) 165
GluI GCNGC 2 cut(s) 685, 716
GsuI CTGGAG 2 cut(s) 644, 711
HapII CCGG 1 cut(s) 405
HhaI GCGC 1 cut(s) 166
Hin1II CATG 4 cut(s) 324, 346, 644, 659
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HindIII AAGCTT 2 cut(s) 191, 702
HinfI GANTC 5 cut(s) 172, 305, 330, 394, 611
HpaI GTTAAC 1 cut(s) 108
HpaII CCGG 1 cut(s) 405
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 3 cut(s) 171, 205, 694
Hpy188III TCNNGA 5 cut(s) 334, 608, 623, 641, 710
Hpy8I GTNNAC 1 cut(s) 108
Hpy99I CGWCG 2 cut(s) 50, 223
HpyAV CCTTC 5 cut(s) 68, 113, 254, 519, 689
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 718
HpyF10VI GCNNNNNNNGC 2 cut(s) 321, 721
HpyF3I CTNAG 3 cut(s) 174, 441, 606
Hsp92II CATG 4 cut(s) 324, 346, 644, 659
HspAI GCGC 1 cut(s) 164
KspAI GTTAAC 1 cut(s) 108
Kzo9I GATC 2 cut(s) 286, 491
LmnI GCTCC 2 cut(s) 41, 83
LpnPI CCDG 9 cut(s) 161, 339, 362, 418, 449, 593, 608, 637, 741
Lsp1109I GCAGC 1 cut(s) 702
LweI GCATC 1 cut(s) 205
MaeIII GTNAC 1 cut(s) 436
MalI GATC 2 cut(s) 288, 493
MbiI CCGCTC 1 cut(s) 86
MboI GATC 2 cut(s) 286, 491
MboII GAAGA 4 cut(s) 224, 296, 365, 499
MflI RGATCY 1 cut(s) 491
MhlI GDGCHC 1 cut(s) 203
MluCI AATT 1 cut(s) 123
MlyI GAGTC 1 cut(s) 166
MmeI TCCRAC 1 cut(s) 114
MseI TTAA 3 cut(s) 107, 534, 602
MspI CCGG 1 cut(s) 405
Mva1269I GAATGC 1 cut(s) 718
MwoI GCNNNNNNNGC 2 cut(s) 321, 721
NdeI CATATG 1 cut(s) 390
NdeII GATC 2 cut(s) 286, 491
NlaIII CATG 4 cut(s) 324, 346, 644, 659
NlaIV GGNNCC 2 cut(s) 43, 493
PaeR7I CTCGAG 2 cut(s) 20, 710
PagI TCATGA 1 cut(s) 640
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PctI GAATGC 1 cut(s) 718
PfeI GAWTC 4 cut(s) 305, 330, 394, 611
PkrI GCNGC 2 cut(s) 686, 717
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Psp124BI GAGCTC 1 cut(s) 203
PspN4I GGNNCC 2 cut(s) 43, 493
PspXI VCTCGAGB 1 cut(s) 20
PsuI RGATCY 1 cut(s) 491
RsaI GTAC 2 cut(s) 547, 598
RsaNI GTAC 2 cut(s) 546, 597
SacI GAGCTC 1 cut(s) 203
SaqAI TTAA 3 cut(s) 107, 534, 602
SatI GCNGC 2 cut(s) 685, 716
Sau3AI GATC 2 cut(s) 286, 491
SchI GAGTC 1 cut(s) 166
SduI GDGCHC 1 cut(s) 203
SetI ASST 6 cut(s) 107, 195, 203, 547, 706, 717
SfaNI GCATC 1 cut(s) 205
SfcI CTRYAG 1 cut(s) 325
Sfr274I CTCGAG 2 cut(s) 20, 710
SlaI CTCGAG 2 cut(s) 20, 710
SmlI CTYRAG 3 cut(s) 20, 194, 710
SmoI CTYRAG 3 cut(s) 20, 194, 710
Sse9I AATT 1 cut(s) 123
SsiI CCGC 5 cut(s) 5, 78, 86, 237, 684
SspI AATATT 1 cut(s) 538
SstI GAGCTC 1 cut(s) 203
TaaI ACNGT 1 cut(s) 160
TaqI TCGA 5 cut(s) 21, 141, 303, 661, 711
TasI AATT 1 cut(s) 123
TatI WGTACW 1 cut(s) 596
TauI GCSGC 1 cut(s) 687
TfiI GAWTC 4 cut(s) 305, 330, 394, 611
Tru1I TTAA 3 cut(s) 107, 534, 602
Tru9I TTAA 3 cut(s) 107, 534, 602
TscAI CASTG 1 cut(s) 455
TseI GCWGC 1 cut(s) 715
TspDTI ATGAA 4 cut(s) 87, 377, 629, 644
TspGWI ACGGA 3 cut(s) 125, 236, 500
TspRI CASTG 1 cut(s) 455
XapI RAATTY 1 cut(s) 123
XhoI CTCGAG 2 cut(s) 20, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.