RLG00000031320

PLAC8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0008620
Physical Location & Seq
Forward (+)
4071857 .. 4073814
1958 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031320

Sequence Viewer

Length: 789 bp
ATGGGGGATTTAGAGAAGCAAGAGAGGGTTGTGCTGAGCAAGGACGAGGCGGAAGAGGAGGAGATGGAGAGGCTGGTCGGTGGCGGCGGCGGCGGAATGGCGGTGTTGGATTTCGACATGCTCTGCTCCTCCGTCGCCTTACAGACCCAGGGCAAGTCCGCCGCCAAGTTCCAGAGCTTTGACGCCGGAGAAGAAGAAGGAGAAGAAGCTGAGGTTGGCGATTTCGGCGGCGTGTTCCGGATGTGGGAGGGTGAGCTTCTCGATTGGTTCGACGATCGCCGCGTCGCTGTTCAGTCGGCATGCTGTCCGTGCTATACATTTGGGAAGAACATGAAGCGAGCTGGTTTTGGCCCTGGCTTTTTACAGGGAACTCTTCATTTAGTTCTTGTTGCGAGCATCCTTCTCAACTGCATTGCGTTTATTATCACCAAGAAGCGCTGCTTTATATATCTGGTGGTTGCTTTCACCATTACACTAGGAACGTATTTGGGGTACTTCCGTACACAGATAAGAAACAAATTTAACATAAGGGGTAATGATAGTTCCATGGATGATTGCATCTACCACCTTGTCTGCCCATGCTGCACTTTATCTCAGGAAGCCAGAACATTAGAGATGAACAATGTCCAAGATGGCACCTGGCATGGCAGGGGCGATTCAATATACATAGGCAGCCTTGGAGAAGGAGGAAAGTCTTTCTTTGAGCTCCAAGCACCTCCTCTTGTGTCAATCAAGTCCCCCGACCTCTGCAACGCGCAAAAAAGTACAGCGACTAGTGCATATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

263

Amino Acids

28.77

Weight (kDa)

4.82

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 82 - 202 1.6e-20 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 635
AccII CGCG 2 cut(s) 282, 755
AccIII TCCGGA 1 cut(s) 237
AcsI RAATTY 1 cut(s) 518
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 3 cut(s) 494, 502, 766
AfeI AGCGCT 1 cut(s) 437
AfiI CCNNNNNNNGG 1 cut(s) 244
AgsI TTSAA 1 cut(s) 660
AhlI ACTAGT 1 cut(s) 773
AjnI CCWGG 3 cut(s) 147, 352, 638
AjuI GAANNNNNNNTTGG 2 cut(s) 198, 230
AluBI AGCT 5 cut(s) 177, 209, 256, 341, 706
AluI AGCT 5 cut(s) 177, 209, 256, 341, 706
Alw21I GWGCWC 1 cut(s) 708
Aor13HI TCCGGA 1 cut(s) 237
Aor51HI AGCGCT 1 cut(s) 437
AoxI GGCC 1 cut(s) 349
ApeKI GCWGC 3 cut(s) 438, 582, 672
ApoI RAATTY 1 cut(s) 518
AspLEI GCGC 2 cut(s) 438, 757
AspS9I GGNCC 1 cut(s) 350
AsuHPI GGTGA 3 cut(s) 263, 418, 457
BaeI ACNNNNGTAYC 2 cut(s) 484, 517
BanI GGYRCC 1 cut(s) 635
BanII GRGCYC 1 cut(s) 708
Bbv12I GWGCWC 1 cut(s) 708
BbvCI CCTCAGC 1 cut(s) 210
BbvI GCAGC 3 cut(s) 425, 569, 684
BccI CCATC 2 cut(s) 58, 626
BciT130I CCWGG 3 cut(s) 149, 354, 640
BcuI ACTAGT 1 cut(s) 773
BfaI CTAG 2 cut(s) 476, 774
BfoI RGCGCY 1 cut(s) 439
BisI GCNGC 9 cut(s) 85, 88, 91, 162, 229, 280, 439, 583, 673
BlpI GCTNAGC 1 cut(s) 35
BlsI GCNGC 9 cut(s) 86, 89, 92, 163, 230, 281, 440, 584, 674
Bme1390I CCNGG 3 cut(s) 149, 354, 640
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 1 cut(s) 637
BmrFI CCNGG 3 cut(s) 149, 354, 640
BmsI GCATC 2 cut(s) 405, 567
Bpu10I CCTNAGC 1 cut(s) 210
Bpu1102I GCTNAGC 1 cut(s) 35
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 5 cut(s) 147, 148, 352, 546, 676
BsaWI WCCGGW 1 cut(s) 237
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse3DI GCAATG 1 cut(s) 411
BseAI TCCGGA 1 cut(s) 237
BseBI CCWGG 3 cut(s) 149, 354, 640
BseDI CCNNGG 5 cut(s) 147, 148, 352, 546, 676
BseGI GGATG 3 cut(s) 246, 396, 556
BseLI CCNNNNNNNGG 1 cut(s) 244
BseMI GCAATG 1 cut(s) 411
BseMII CTCAG 3 cut(s) 26, 201, 608
BseRI GAGGAG 4 cut(s) 71, 74, 118, 708
BseXI GCAGC 3 cut(s) 425, 569, 684
BsgI GTGCAG 1 cut(s) 568
Bsh1236I CGCG 2 cut(s) 282, 755
Bsh1285I CGRYCG 1 cut(s) 277
BshFI GGCC 1 cut(s) 351
BshNI GGYRCC 1 cut(s) 635
BsiEI CGRYCG 1 cut(s) 277
BsiHKAI GWGCWC 1 cut(s) 708
BsiSI CCGG 2 cut(s) 186, 238
BslFI GGGAC 1 cut(s) 721
BslI CCNNNNNNNGG 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 721
BsnI GGCC 1 cut(s) 351
Bsp1286I GDGCHC 1 cut(s) 708
Bsp13I TCCGGA 1 cut(s) 237
Bsp143I GATC 1 cut(s) 274
Bsp1720I GCTNAGC 1 cut(s) 35
Bsp19I CCATGG 1 cut(s) 546
BspANI GGCC 1 cut(s) 351
BspCNI CTCAG 3 cut(s) 27, 202, 607
BspEI TCCGGA 1 cut(s) 237
BspFNI CGCG 2 cut(s) 282, 755
BspHI TCATGA 1 cut(s) 785
BspLI GGNNCC 1 cut(s) 637
BspT107I GGYRCC 1 cut(s) 635
BsrDI GCAATG 1 cut(s) 411
BssECI CCNNGG 5 cut(s) 147, 148, 352, 546, 676
BssMI GATC 1 cut(s) 274
BssNI GRCGYC 1 cut(s) 183
BssT1I CCWWGG 2 cut(s) 546, 676
Bst2UI CCWGG 3 cut(s) 149, 354, 640
Bst6I CTCTTC 2 cut(s) 48, 378
BstACI GRCGYC 1 cut(s) 183
BstC8I GCNNGC 3 cut(s) 301, 339, 394
BstDEI CTNAG 3 cut(s) 35, 210, 594
BstDSI CCRYGG 1 cut(s) 546
BstF5I GGATG 3 cut(s) 246, 396, 556
BstFNI CGCG 2 cut(s) 282, 755
BstH2I RGCGCY 1 cut(s) 439
BstHHI GCGC 2 cut(s) 438, 757
BstKTI GATC 1 cut(s) 277
BstMBI GATC 1 cut(s) 274
BstMCI CGRYCG 1 cut(s) 277
BstMWI GCNNNNNNNGC 5 cut(s) 90, 225, 309, 582, 776
BstNI CCWGG 3 cut(s) 149, 354, 640
BstNSI RCATGY 2 cut(s) 121, 303
BstSCI CCNGG 3 cut(s) 147, 352, 638
BstUI CGCG 2 cut(s) 282, 755
BstV1I GCAGC 3 cut(s) 425, 569, 684
BsuRI GGCC 1 cut(s) 351
BtgI CCRYGG 1 cut(s) 546
BtsCI GGATG 3 cut(s) 246, 396, 556
Cac8I GCNNGC 3 cut(s) 301, 339, 394
CciI TCATGA 1 cut(s) 785
CfoI GCGC 2 cut(s) 438, 757
Cfr13I GGNCC 1 cut(s) 350
CseI GACGC 2 cut(s) 191, 271
Csp6I GTAC 3 cut(s) 493, 501, 765
CviAII CATG 7 cut(s) 118, 300, 331, 547, 579, 644, 786
CviQI GTAC 3 cut(s) 493, 501, 765
DdeI CTNAG 3 cut(s) 35, 210, 594
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
Eam1104I CTCTTC 2 cut(s) 48, 378
EarI CTCTTC 2 cut(s) 48, 378
EciI GGCGGA 3 cut(s) 65, 108, 148
Ecl136II GAGCTC 1 cut(s) 706
Eco130I CCWWGG 2 cut(s) 546, 676
Eco24I GRGCYC 1 cut(s) 708
Eco47III AGCGCT 1 cut(s) 437
Eco53kI GAGCTC 1 cut(s) 706
EcoICRI GAGCTC 1 cut(s) 706
EcoRII CCWGG 3 cut(s) 147, 352, 638
EcoT14I CCWWGG 2 cut(s) 546, 676
EcoT38I GRGCYC 1 cut(s) 708
ErhI CCWWGG 2 cut(s) 546, 676
FaeI CATG 7 cut(s) 121, 303, 334, 550, 582, 647, 789
FalI AAGNNNNNCTT 4 cut(s) 425, 457, 683, 715
FaqI GGGAC 1 cut(s) 721
FatI CATG 7 cut(s) 117, 299, 330, 546, 578, 643, 785
Fnu4HI GCNGC 9 cut(s) 85, 88, 91, 162, 229, 280, 439, 583, 673
FokI GGATG 3 cut(s) 253, 383, 563
FriOI GRGCYC 1 cut(s) 708
Fsp4HI GCNGC 9 cut(s) 85, 88, 91, 162, 229, 280, 439, 583, 673
FspBI CTAG 2 cut(s) 476, 774
GlaI GCGC 2 cut(s) 437, 756
GluI GCNGC 9 cut(s) 85, 88, 91, 162, 229, 280, 439, 583, 673
HaeII RGCGCY 1 cut(s) 439
HaeIII GGCC 1 cut(s) 351
HapII CCGG 2 cut(s) 186, 238
HgaI GACGC 2 cut(s) 191, 271
HhaI GCGC 2 cut(s) 438, 757
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 7 cut(s) 121, 303, 334, 550, 582, 647, 789
Hin6I GCGC 2 cut(s) 436, 755
HinP1I GCGC 2 cut(s) 436, 755
HinfI GANTC 1 cut(s) 656
HpaII CCGG 2 cut(s) 186, 238
HphI GGTGA 3 cut(s) 263, 418, 457
Hpy166II GTNNAC 1 cut(s) 503
Hpy188III TCNNGA 5 cut(s) 172, 238, 260, 596, 786
Hpy8I GTNNAC 1 cut(s) 503
Hpy99I CGWCG 3 cut(s) 137, 275, 287
HpyAV CCTTC 3 cut(s) 191, 410, 677
HpyCH4IV ACGT 1 cut(s) 482
HpyCH4V TGCA 5 cut(s) 411, 558, 585, 750, 779
HpyF10VI GCNNNNNNNGC 5 cut(s) 90, 225, 309, 582, 776
HpyF3I CTNAG 3 cut(s) 35, 210, 594
HpySE526I ACGT 1 cut(s) 482
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 7 cut(s) 121, 303, 334, 550, 582, 647, 789
HspAI GCGC 2 cut(s) 436, 755
Kpn2I TCCGGA 1 cut(s) 237
Kzo9I GATC 1 cut(s) 274
LmnI GCTCC 2 cut(s) 131, 711
Lsp1109I GCAGC 3 cut(s) 425, 569, 684
LweI GCATC 2 cut(s) 405, 567
MaeI CTAG 2 cut(s) 476, 774
MaeII ACGT 1 cut(s) 482
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 6 cut(s) 65, 203, 206, 215, 337, 365
MhlI GDGCHC 1 cut(s) 708
MluCI AATT 1 cut(s) 518
MmeI TCCRAC 1 cut(s) 87
MroI TCCGGA 1 cut(s) 237
MseI TTAA 1 cut(s) 522
MslI CAYNNNNRTG 1 cut(s) 784
MspI CCGG 2 cut(s) 186, 238
MspR9I CCNGG 3 cut(s) 149, 354, 640
MvaI CCWGG 3 cut(s) 149, 354, 640
MvnI CGCG 2 cut(s) 282, 755
MwoI GCNNNNNNNGC 5 cut(s) 90, 225, 309, 582, 776
NcoI CCATGG 1 cut(s) 546
NdeII GATC 1 cut(s) 274
NlaIII CATG 7 cut(s) 121, 303, 334, 550, 582, 647, 789
NlaIV GGNNCC 1 cut(s) 637
NspI RCATGY 2 cut(s) 121, 303
PaeI GCATGC 1 cut(s) 303
PagI TCATGA 1 cut(s) 785
PasI CCCWGGG 1 cut(s) 148
PcsI WCGNNNNNNNCGW 2 cut(s) 267, 279
PfeI GAWTC 1 cut(s) 656
PkrI GCNGC 9 cut(s) 86, 89, 92, 163, 230, 281, 440, 584, 674
Ple19I CGATCG 1 cut(s) 277
Psp124BI GAGCTC 1 cut(s) 708
Psp6I CCWGG 3 cut(s) 147, 352, 638
PspGI CCWGG 3 cut(s) 147, 352, 638
PspN4I GGNNCC 1 cut(s) 637
PspPI GGNCC 1 cut(s) 350
PsrI GAACNNNNNNTAC 2 cut(s) 526, 558
PvuI CGATCG 1 cut(s) 277
RsaI GTAC 3 cut(s) 494, 502, 766
RsaNI GTAC 3 cut(s) 493, 501, 765
RseI CAYNNNNRTG 1 cut(s) 784
SacI GAGCTC 1 cut(s) 708
SaqAI TTAA 1 cut(s) 522
SatI GCNGC 9 cut(s) 85, 88, 91, 162, 229, 280, 439, 583, 673
Sau3AI GATC 1 cut(s) 274
Sau96I GGNCC 1 cut(s) 350
ScrFI CCNGG 3 cut(s) 149, 354, 640
SduI GDGCHC 1 cut(s) 708
SfaNI GCATC 2 cut(s) 405, 567
SmiMI CAYNNNNRTG 1 cut(s) 784
SpeI ACTAGT 1 cut(s) 773
SphI GCATGC 1 cut(s) 303
Sse9I AATT 1 cut(s) 518
SspMI CTAG 2 cut(s) 476, 774
SstI GAGCTC 1 cut(s) 708
StyD4I CCNGG 3 cut(s) 147, 352, 638
StyI CCWWGG 2 cut(s) 546, 676
TaiI ACGT 1 cut(s) 485
TaqI TCGA 3 cut(s) 114, 261, 270
TasI AATT 1 cut(s) 518
TatI WGTACW 1 cut(s) 764
TauI GCSGC 6 cut(s) 87, 90, 93, 164, 231, 282
TfiI GAWTC 1 cut(s) 656
Tru1I TTAA 1 cut(s) 522
Tru9I TTAA 1 cut(s) 522
TseI GCWGC 3 cut(s) 438, 582, 672
TspDTI ATGAA 4 cut(s) 347, 365, 632, 774
TspGWI ACGGA 3 cut(s) 121, 297, 488
XapI RAATTY 1 cut(s) 518
XceI RCATGY 2 cut(s) 121, 303
XspI CTAG 2 cut(s) 476, 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.