Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0008620

Physical Location & Seq

Genomic Coordinates Reverse (-)

45409746 .. 45412118

Gene Structure 2373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1328900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGGGGATTTGGAGAAGCAAGAGACGGTGCTGCTGAAGAAGGCGGAGGAAACGGCGGAAGGGGAAGAAAAGGAGAGGCTTTTGGAGGGAAGTGGAATGGCGGTCGTGGATTTCGACCTGCTCTGCTCGACGGTGGCGTTGCAGACCCAGGGCAAGCTGGCGGCCAAGCTCCAGAGCTTCCCCAGAGGAGAGGAAGACGGAGACGCAGGGGACTTGGGTGGCGTCTTCAGGATGTGGGAAGGTGAAGTCCTCGAATGCTTCGATGACCGTCGTGTTGCTCTCGAATCCCTCTGTTGCCCATGCTATAGATTTGGGAAGAACATGAGACGAGCTGGTTTCGGTCCTTGTTCGTTACAGGGAGTTCTTCATTTGATCCTCGTTGTTCTTGTCCTTCTCAACGGCATTGCCTTCATTGTCACCAAGAAGCACTGCTTTCTATATTTGGCGGTTGCTTTCAGCATTTCACTAGGAACGTATTTGGGGTACTTCCGAACACAGATAAAGAAGAAATTTAACATCAGGGGTAGTGATAGTTCCTTGGATGATTGCATCTACCATCTCATCTGCCCGTGCTGTGCATTATGTCAGGAATCCAGAACATTGGAGATGAACAATGTCCAAGATGGCACCTGGCATGGTCGAGGTGATACGATATGCATAGGTAGCCTTGGAGAAGGTGCAAAATCGTTCTTTGAGCTACAACCGCCACCTATTGTCTCGATCAAATCCCCTGATCCCTGCAGCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

250

Amino Acids

27.39

Weight (kDa)

5.23

Isoelectric Point (pI)

33.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAC8	PF04749	79 - 199	1.6e-21	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11380
fragaria_vesca	FvH4_3g03670
malus_domestica	MD05G1328900.v1.1 MD10G1305800.v1.1
prunus_persica	Prupe.4G033900_v2.0.a1 Prupe.5G244100_v2.0.a1
pyrus_communis	pycom05g30220 pycom10g25810
rosa_chinensis	RchiOBHm_Chr5g0005711
rosa_laevigata	RLG00000031320
rosa_multiflora	Rmu_co8412991.1_g000001 Rmu_sc0000570.1_g000028 Rmu_sc0000570.1_g000031 Rmu_sc0010248.1_g000003
rosa_roxburghii	Rroxscaffold_1G00070130
rosa_rugosa	Rorug04G0417500 Rorug04G0417500
rosa_samantha	Rh5AG045100 Rh5BG043800 Rh5CG052600 Rh5DG043600
rosa_wichuraiana	Rw0G008380 Rw5G004530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	126
AccB1I	GGYRCC	1 cut(s)	626
AciI	CCGC	6 cut(s)	44, 56, 101, 161, 446, 704
AclWI	GGATC	2 cut(s)	367, 728
AcoI	YGGCCR	1 cut(s)	162
AcsI	RAATTY	1 cut(s)	509
AcuI	CTGAAG	2 cut(s)	56, 211
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	1 cut(s)	485
AjnI	CCWGG	2 cut(s)	147, 629
AluBI	AGCT	6 cut(s)	157, 169, 177, 332, 697, 744
AluI	AGCT	6 cut(s)	157, 169, 177, 332, 697, 744
Alw26I	GTCTC	4 cut(s)	17, 195, 319, 721
AlwI	GGATC	2 cut(s)	367, 728
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	2 cut(s)	31, 741
ApoI	RAATTY	1 cut(s)	509
AspS9I	GGNCC	1 cut(s)	341
AsuHPI	GGTGA	3 cut(s)	254, 409, 656
AvaII	GGWCC	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	626
BbsI	GAAGAC	2 cut(s)	201, 217
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	2 cut(s)	564, 617
BceAI	ACGGC	2 cut(s)	69, 415
BciT130I	CCWGG	2 cut(s)	149, 631
BcoDI	GTCTC	4 cut(s)	17, 195, 319, 721
BfaI	CTAG	1 cut(s)	467
BfmI	CTRYAG	2 cut(s)	304, 739
BfuAI	ACCTGC	1 cut(s)	126
BisI	GCNGC	3 cut(s)	32, 162, 742
BlsI	GCNGC	3 cut(s)	33, 163, 743
Bme1390I	CCNGG	2 cut(s)	149, 631
Bme18I	GGWCC	1 cut(s)	341
BmgT120I	GGNCC	1 cut(s)	341
BmiI	GGNNCC	1 cut(s)	628
BmrFI	CCNGG	2 cut(s)	149, 631
BmsI	GCATC	1 cut(s)	558
BpiI	GAAGAC	2 cut(s)	201, 217
BpmI	CTGGAG	1 cut(s)	155
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	4 cut(s)	147, 148, 537, 667
Bse3DI	GCAATG	1 cut(s)	402
BseBI	CCWGG	2 cut(s)	149, 631
BseDI	CCNNGG	4 cut(s)	147, 148, 537, 667
BseGI	GGATG	2 cut(s)	237, 547
BseMI	GCAATG	1 cut(s)	402
BseRI	GAGGAG	1 cut(s)	201
BseXI	GCAGC	1 cut(s)	18
Bsh1285I	CGRYCG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	164
BshNI	GGYRCC	1 cut(s)	626
BsiEI	CGRYCG	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	224
BsmAI	GTCTC	4 cut(s)	17, 195, 319, 721
BsmBI	CGTCTC	3 cut(s)	17, 195, 319
BsmFI	GGGAC	1 cut(s)	224
BsmI	GAATGC	1 cut(s)	260
BsnI	GGCC	1 cut(s)	164
Bsp143I	GATC	3 cut(s)	372, 720, 733
BspACI	CCGC	6 cut(s)	44, 56, 101, 161, 446, 704
BspANI	GGCC	1 cut(s)	164
BspLI	GGNNCC	1 cut(s)	628
BspMAI	CTGCAG	1 cut(s)	743
BspMI	ACCTGC	1 cut(s)	126
BspPI	GGATC	2 cut(s)	367, 728
BspT107I	GGYRCC	1 cut(s)	626
BsrDI	GCAATG	1 cut(s)	402
BssECI	CCNNGG	4 cut(s)	147, 148, 537, 667
BssMI	GATC	3 cut(s)	372, 720, 733
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	2 cut(s)	537, 667
Bst2UI	CCWGG	2 cut(s)	149, 631
Bst4CI	ACNGT	3 cut(s)	28, 133, 269
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	2 cut(s)	155, 159
BstF5I	GGATG	2 cut(s)	237, 547
BstKTI	GATC	3 cut(s)	375, 723, 736
BstMAI	GTCTC	4 cut(s)	17, 195, 319, 721
BstMBI	GATC	3 cut(s)	372, 720, 733
BstMCI	CGRYCG	1 cut(s)	105
BstMWI	GCNNNNNNNGC	2 cut(s)	663, 703
BstNI	CCWGG	2 cut(s)	149, 631
BstSCI	CCNGG	2 cut(s)	147, 629
BstSFI	CTRYAG	2 cut(s)	304, 739
BstV1I	GCAGC	1 cut(s)	18
BstV2I	GAAGAC	2 cut(s)	201, 217
BstXI	CCANNNNNNTGG	1 cut(s)	601
BsuRI	GGCC	1 cut(s)	164
BtsCI	GGATG	2 cut(s)	237, 547
BtsI	GCAGTG	1 cut(s)	427
BtsIMutI	CAGTG	1 cut(s)	427
BveI	ACCTGC	1 cut(s)	126
Cac8I	GCNNGC	2 cut(s)	155, 159
Cfr13I	GGNCC	1 cut(s)	341
CseI	GACGC	2 cut(s)	211, 212
Csp6I	GTAC	1 cut(s)	484
CviAII	CATG	3 cut(s)	300, 322, 635
CviJI	RGCY	9 cut(s)	79, 157, 164, 169, 177, 332, 666, 697, 744
CviKI_1	RGCY	9 cut(s)	79, 157, 164, 169, 177, 332, 666, 697, 744
CviQI	GTAC	1 cut(s)	484
DpnI	GATC	3 cut(s)	374, 722, 735
DpnII	GATC	3 cut(s)	372, 720, 733
EaeI	YGGCCR	1 cut(s)	162
EciI	GGCGGA	2 cut(s)	59, 71
Eco130I	CCWWGG	2 cut(s)	537, 667
Eco47I	GGWCC	1 cut(s)	341
Eco57I	CTGAAG	2 cut(s)	56, 211
EcoRII	CCWGG	2 cut(s)	147, 629
EcoT14I	CCWWGG	2 cut(s)	537, 667
EcoT22I	ATGCAT	1 cut(s)	659
ErhI	CCWWGG	2 cut(s)	537, 667
Esp3I	CGTCTC	3 cut(s)	17, 195, 319
FaeI	CATG	3 cut(s)	303, 325, 638
FaiI	YATR	9 cut(s)	301, 306, 323, 439, 583, 636, 655, 659, 748
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	3 cut(s)	299, 321, 634
Fnu4HI	GCNGC	3 cut(s)	32, 162, 742
FokI	GGATG	2 cut(s)	244, 554
Fsp4HI	GCNGC	3 cut(s)	32, 162, 742
FspBI	CTAG	1 cut(s)	467
GluI	GCNGC	3 cut(s)	32, 162, 742
GsuI	CTGGAG	1 cut(s)	155
HaeIII	GGCC	1 cut(s)	164
HgaI	GACGC	2 cut(s)	211, 212
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	303, 325, 638
HinfI	GANTC	2 cut(s)	284, 590
HphI	GGTGA	3 cut(s)	254, 409, 656
Hpy188I	TCNGA	1 cut(s)	491
Hpy188III	TCNNGA	6 cut(s)	172, 229, 281, 587, 594, 718
Hpy99I	CGWCG	2 cut(s)	133, 273
HpyAV	CCTTC	6 cut(s)	34, 53, 233, 401, 418, 668
HpyCH4III	ACNGT	3 cut(s)	28, 133, 269
HpyCH4IV	ACGT	1 cut(s)	473
HpyCH4V	TGCA	6 cut(s)	142, 549, 578, 657, 680, 741
HpyF10VI	GCNNNNNNNGC	2 cut(s)	663, 703
HpySE526I	ACGT	1 cut(s)	473
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	303, 325, 638
Kzo9I	GATC	3 cut(s)	372, 720, 733
LmnI	GCTCC	1 cut(s)	174
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	1 cut(s)	558
MaeI	CTAG	1 cut(s)	467
MaeII	ACGT	1 cut(s)	473
MaeIII	GTNAC	2 cut(s)	351, 415
MalI	GATC	3 cut(s)	374, 722, 735
MboI	GATC	3 cut(s)	372, 720, 733
MboII	GAAGA	7 cut(s)	49, 77, 206, 217, 328, 356, 517
MluCI	AATT	1 cut(s)	509
MnlI	CCTC	9 cut(s)	40, 69, 79, 179, 184, 260, 299, 386, 635
Mph1103I	ATGCAT	1 cut(s)	659
MseI	TTAA	1 cut(s)	513
MspR9I	CCNGG	2 cut(s)	149, 631
Mva1269I	GAATGC	1 cut(s)	260
MvaI	CCWGG	2 cut(s)	149, 631
MwoI	GCNNNNNNNGC	2 cut(s)	663, 703
NdeII	GATC	3 cut(s)	372, 720, 733
NlaIII	CATG	3 cut(s)	303, 325, 638
NlaIV	GGNNCC	1 cut(s)	628
NmuCI	GTSAC	1 cut(s)	415
NsiI	ATGCAT	1 cut(s)	659
PasI	CCCWGGG	1 cut(s)	148
PcsI	WCGNNNNNNNCGW	3 cut(s)	111, 134, 258
PctI	GAATGC	1 cut(s)	260
PfeI	GAWTC	2 cut(s)	284, 590
PkrI	GCNGC	3 cut(s)	33, 163, 743
Psp6I	CCWGG	2 cut(s)	147, 629
PspGI	CCWGG	2 cut(s)	147, 629
PspN4I	GGNNCC	1 cut(s)	628
PspPI	GGNCC	1 cut(s)	341
PsrI	GAACNNNNNNTAC	2 cut(s)	517, 549
PstI	CTGCAG	1 cut(s)	743
RsaI	GTAC	1 cut(s)	485
RsaNI	GTAC	1 cut(s)	484
SaqAI	TTAA	1 cut(s)	513
SatI	GCNGC	3 cut(s)	32, 162, 742
Sau3AI	GATC	3 cut(s)	372, 720, 733
Sau96I	GGNCC	1 cut(s)	341
ScrFI	CCNGG	2 cut(s)	149, 631
SfaNI	GCATC	1 cut(s)	558
SfcI	CTRYAG	2 cut(s)	304, 739
SinI	GGWCC	1 cut(s)	341
Sse9I	AATT	1 cut(s)	509
SsiI	CCGC	6 cut(s)	44, 56, 101, 161, 446, 704
SspMI	CTAG	1 cut(s)	467
StyD4I	CCNGG	2 cut(s)	147, 629
StyI	CCWWGG	2 cut(s)	537, 667
TaaI	ACNGT	3 cut(s)	28, 133, 269
TaiI	ACGT	1 cut(s)	476
TaqI	TCGA	7 cut(s)	114, 128, 252, 261, 282, 640, 719
TaqII	GACCGA	1 cut(s)	329
TasI	AATT	1 cut(s)	509
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	2 cut(s)	284, 590
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TscAI	CASTG	1 cut(s)	434
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	2 cut(s)	31, 741
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	3 cut(s)	356, 400, 623
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	434
VpaK11BI	GGWCC	1 cut(s)	341
XapI	RAATTY	1 cut(s)	509
XspI	CTAG	1 cut(s)	467
Zsp2I	ATGCAT	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.