Rroxscaffold_1G00070130

PLAC8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0008620
Physical Location & Seq
Reverse (-)
90965559 .. 90967806
2248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00070130.1

Sequence Viewer

Length: 720 bp
ATGGCGGTGTTGGATTTCGACATGCTCTGTTCCACCGTCGCCTTACAGACCCAGGGCAAGTCCGCCGCCAAGTTCCAGAGCTTTGACGCCGGAGAAGGAGAAGAAGAAGAAGCTGAGGTTGGCGATTTCGGCGGCGTGTTCCGGATGTGGGAGGGTGAGCTTCTCGATTGGTTCGACGATCGCCGCGTCGCTCTCCAGTCGGCTTGCTGTCCGTGCTATACATTTGGGAAGAACATGAAGCGAGCTGGTTTTGGTCCTGGCTTTTTACAGGGAACTCTTCATTTAGTTCTTGTTGCGAGCATCCTTCTCAACTGCATTGCGTTTATTATCACCAAGAAGCGCTGCTTTATATATCTGGTGGTTGCTTTCACCATTACACTAGGAACGTATTTGGGGTACTTCCGTACACAGATAAGAAACAAATTTAACATAAGGGGTAATGATAGTTCCATGGATGATTGCATCTACCACCTTGTCTGCCCATGCTGCACATTATCTCAGGAAGCCAGAACATTAGAGATGAACAATGTCCAAGATGGCACCTGGCATGGCAGGGGCGATTCAATATACATAGGTAGCCTTGGAGAAGGAGGAAAGTCTTTCTTTGAGCTCCAAGCACCTCCTCTTGTGTCAATCAAGTCCCCCGACCTCTGCAACGCGCAAAAAGTACAGCAACTAGTGCATATTCATGAGTTCAACAAGCTGGTCATTTTCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

239

Amino Acids

26.66

Weight (kDa)

5.54

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 50 - 170 8.8e-21 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 539
AccII CGCG 2 cut(s) 186, 659
AccIII TCCGGA 1 cut(s) 141
AciI CCGC 5 cut(s) 5, 63, 66, 132, 184
AcsI RAATTY 1 cut(s) 422
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 3 cut(s) 398, 406, 669
AfeI AGCGCT 1 cut(s) 341
AfiI CCNNNNNNNGG 1 cut(s) 148
AgsI TTSAA 2 cut(s) 564, 697
AhlI ACTAGT 1 cut(s) 676
AjnI CCWGG 3 cut(s) 51, 256, 542
AjuI GAANNNNNNNTTGG 2 cut(s) 102, 134
AluBI AGCT 6 cut(s) 81, 113, 160, 245, 610, 703
AluI AGCT 6 cut(s) 81, 113, 160, 245, 610, 703
Alw21I GWGCWC 1 cut(s) 612
Aor13HI TCCGGA 1 cut(s) 141
Aor51HI AGCGCT 1 cut(s) 341
ApeKI GCWGC 2 cut(s) 342, 486
ApoI RAATTY 1 cut(s) 422
AspLEI GCGC 2 cut(s) 342, 661
AspS9I GGNCC 1 cut(s) 254
AsuHPI GGTGA 3 cut(s) 167, 322, 361
AvaII GGWCC 1 cut(s) 254
BaeI ACNNNNGTAYC 2 cut(s) 388, 421
BanI GGYRCC 1 cut(s) 539
BanII GRGCYC 1 cut(s) 612
Bbv12I GWGCWC 1 cut(s) 612
BbvCI CCTCAGC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 329, 473
BccI CCATC 1 cut(s) 530
BciT130I CCWGG 3 cut(s) 53, 258, 544
BcuI ACTAGT 1 cut(s) 676
BfaI CTAG 2 cut(s) 380, 677
BfoI RGCGCY 1 cut(s) 343
BisI GCNGC 5 cut(s) 66, 133, 184, 343, 487
BlsI GCNGC 5 cut(s) 67, 134, 185, 344, 488
Bme1390I CCNGG 3 cut(s) 53, 258, 544
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 1 cut(s) 541
BmrFI CCNGG 3 cut(s) 53, 258, 544
BmsI GCATC 2 cut(s) 309, 471
BpmI CTGGAG 1 cut(s) 179
Bpu10I CCTNAGC 1 cut(s) 114
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 4 cut(s) 51, 52, 450, 580
BsaWI WCCGGW 1 cut(s) 141
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse1I ACTGG 1 cut(s) 196
Bse3DI GCAATG 1 cut(s) 315
BseAI TCCGGA 1 cut(s) 141
BseBI CCWGG 3 cut(s) 53, 258, 544
BseDI CCNNGG 4 cut(s) 51, 52, 450, 580
BseGI GGATG 3 cut(s) 150, 300, 460
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMI GCAATG 1 cut(s) 315
BseMII CTCAG 2 cut(s) 105, 512
BseNI ACTGG 1 cut(s) 196
BseRI GAGGAG 1 cut(s) 612
BseXI GCAGC 2 cut(s) 329, 473
BsgI GTGCAG 1 cut(s) 472
Bsh1236I CGCG 2 cut(s) 186, 659
Bsh1285I CGRYCG 1 cut(s) 181
BshNI GGYRCC 1 cut(s) 539
BsiEI CGRYCG 1 cut(s) 181
BsiHKAI GWGCWC 1 cut(s) 612
BsiSI CCGG 2 cut(s) 90, 142
BslFI GGGAC 1 cut(s) 625
BslI CCNNNNNNNGG 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 625
Bsp1286I GDGCHC 1 cut(s) 612
Bsp13I TCCGGA 1 cut(s) 141
Bsp143I GATC 1 cut(s) 178
Bsp19I CCATGG 1 cut(s) 450
BspACI CCGC 5 cut(s) 5, 63, 66, 132, 184
BspCNI CTCAG 2 cut(s) 106, 511
BspEI TCCGGA 1 cut(s) 141
BspFNI CGCG 2 cut(s) 186, 659
BspHI TCATGA 1 cut(s) 688
BspLI GGNNCC 1 cut(s) 541
BspT107I GGYRCC 1 cut(s) 539
BsrDI GCAATG 1 cut(s) 315
BsrI ACTGG 1 cut(s) 196
BssECI CCNNGG 4 cut(s) 51, 52, 450, 580
BssMI GATC 1 cut(s) 178
BssNI GRCGYC 1 cut(s) 87
BssT1I CCWWGG 2 cut(s) 450, 580
Bst2UI CCWGG 3 cut(s) 53, 258, 544
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 282
BstACI GRCGYC 1 cut(s) 87
BstAPI GCANNNNNTGC 1 cut(s) 679
BstC8I GCNNGC 3 cut(s) 205, 243, 298
BstDEI CTNAG 2 cut(s) 114, 498
BstDSI CCRYGG 1 cut(s) 450
BstF5I GGATG 3 cut(s) 150, 300, 460
BstFNI CGCG 2 cut(s) 186, 659
BstH2I RGCGCY 1 cut(s) 343
BstHHI GCGC 2 cut(s) 342, 661
BstKTI GATC 1 cut(s) 181
BstMBI GATC 1 cut(s) 178
BstMCI CGRYCG 1 cut(s) 181
BstMWI GCNNNNNNNGC 4 cut(s) 129, 213, 486, 679
BstNI CCWGG 3 cut(s) 53, 258, 544
BstNSI RCATGY 1 cut(s) 25
BstSCI CCNGG 3 cut(s) 51, 256, 542
BstUI CGCG 2 cut(s) 186, 659
BstV1I GCAGC 2 cut(s) 329, 473
BtgI CCRYGG 1 cut(s) 450
BtsCI GGATG 3 cut(s) 150, 300, 460
Cac8I GCNNGC 3 cut(s) 205, 243, 298
CciI TCATGA 1 cut(s) 688
CfoI GCGC 2 cut(s) 342, 661
Cfr13I GGNCC 1 cut(s) 254
CseI GACGC 2 cut(s) 95, 175
Csp6I GTAC 3 cut(s) 397, 405, 668
CviAII CATG 6 cut(s) 22, 235, 451, 483, 548, 689
CviQI GTAC 3 cut(s) 397, 405, 668
DdeI CTNAG 2 cut(s) 114, 498
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
EciI GGCGGA 1 cut(s) 52
Ecl136II GAGCTC 1 cut(s) 610
Eco130I CCWWGG 2 cut(s) 450, 580
Eco24I GRGCYC 1 cut(s) 612
Eco47I GGWCC 1 cut(s) 254
Eco47III AGCGCT 1 cut(s) 341
Eco53kI GAGCTC 1 cut(s) 610
EcoICRI GAGCTC 1 cut(s) 610
EcoRII CCWGG 3 cut(s) 51, 256, 542
EcoT14I CCWWGG 2 cut(s) 450, 580
EcoT38I GRGCYC 1 cut(s) 612
ErhI CCWWGG 2 cut(s) 450, 580
FaeI CATG 6 cut(s) 25, 238, 454, 486, 551, 692
FalI AAGNNNNNCTT 4 cut(s) 329, 361, 587, 619
FaqI GGGAC 1 cut(s) 625
FatI CATG 6 cut(s) 21, 234, 450, 482, 547, 688
Fnu4HI GCNGC 5 cut(s) 66, 133, 184, 343, 487
FokI GGATG 3 cut(s) 157, 287, 467
FriOI GRGCYC 1 cut(s) 612
Fsp4HI GCNGC 5 cut(s) 66, 133, 184, 343, 487
FspBI CTAG 2 cut(s) 380, 677
GlaI GCGC 2 cut(s) 341, 660
GluI GCNGC 5 cut(s) 66, 133, 184, 343, 487
GsuI CTGGAG 1 cut(s) 179
HaeII RGCGCY 1 cut(s) 343
HapII CCGG 2 cut(s) 90, 142
HgaI GACGC 2 cut(s) 95, 175
HhaI GCGC 2 cut(s) 342, 661
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 6 cut(s) 25, 238, 454, 486, 551, 692
Hin6I GCGC 2 cut(s) 340, 659
HinP1I GCGC 2 cut(s) 340, 659
HinfI GANTC 1 cut(s) 560
HpaII CCGG 2 cut(s) 90, 142
HphI GGTGA 3 cut(s) 167, 322, 361
Hpy166II GTNNAC 1 cut(s) 407
Hpy188III TCNNGA 5 cut(s) 76, 142, 164, 500, 689
Hpy8I GTNNAC 1 cut(s) 407
Hpy99I CGWCG 3 cut(s) 41, 179, 191
HpyAV CCTTC 3 cut(s) 89, 314, 581
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 386
HpyCH4V TGCA 5 cut(s) 315, 462, 489, 654, 682
HpyF10VI GCNNNNNNNGC 4 cut(s) 129, 213, 486, 679
HpyF3I CTNAG 2 cut(s) 114, 498
HpySE526I ACGT 1 cut(s) 386
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 6 cut(s) 25, 238, 454, 486, 551, 692
HspAI GCGC 2 cut(s) 340, 659
Kpn2I TCCGGA 1 cut(s) 141
Kzo9I GATC 1 cut(s) 178
LmnI GCTCC 1 cut(s) 615
Lsp1109I GCAGC 2 cut(s) 329, 473
LweI GCATC 2 cut(s) 309, 471
MaeI CTAG 2 cut(s) 380, 677
MaeII ACGT 1 cut(s) 386
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 5 cut(s) 113, 116, 119, 241, 269
MhlI GDGCHC 1 cut(s) 612
MluCI AATT 1 cut(s) 422
MnlI CCTC 6 cut(s) 109, 145, 584, 630, 633, 659
MroI TCCGGA 1 cut(s) 141
MseI TTAA 1 cut(s) 426
MslI CAYNNNNRTG 1 cut(s) 687
MspI CCGG 2 cut(s) 90, 142
MspR9I CCNGG 3 cut(s) 53, 258, 544
MvaI CCWGG 3 cut(s) 53, 258, 544
MvnI CGCG 2 cut(s) 186, 659
MwoI GCNNNNNNNGC 4 cut(s) 129, 213, 486, 679
NcoI CCATGG 1 cut(s) 450
NdeII GATC 1 cut(s) 178
NlaIII CATG 6 cut(s) 25, 238, 454, 486, 551, 692
NlaIV GGNNCC 1 cut(s) 541
NspI RCATGY 1 cut(s) 25
PagI TCATGA 1 cut(s) 688
PasI CCCWGGG 1 cut(s) 52
PcsI WCGNNNNNNNCGW 2 cut(s) 171, 183
PfeI GAWTC 1 cut(s) 560
PkrI GCNGC 5 cut(s) 67, 134, 185, 344, 488
Ple19I CGATCG 1 cut(s) 181
Psp124BI GAGCTC 1 cut(s) 612
Psp6I CCWGG 3 cut(s) 51, 256, 542
PspGI CCWGG 3 cut(s) 51, 256, 542
PspN4I GGNNCC 1 cut(s) 541
PspPI GGNCC 1 cut(s) 254
PsrI GAACNNNNNNTAC 2 cut(s) 430, 462
PvuI CGATCG 1 cut(s) 181
RsaI GTAC 3 cut(s) 398, 406, 669
RsaNI GTAC 3 cut(s) 397, 405, 668
RseI CAYNNNNRTG 1 cut(s) 687
SacI GAGCTC 1 cut(s) 612
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 5 cut(s) 66, 133, 184, 343, 487
Sau3AI GATC 1 cut(s) 178
Sau96I GGNCC 1 cut(s) 254
ScrFI CCNGG 3 cut(s) 53, 258, 544
SduI GDGCHC 1 cut(s) 612
SfaNI GCATC 2 cut(s) 309, 471
SinI GGWCC 1 cut(s) 254
SmiMI CAYNNNNRTG 1 cut(s) 687
SpeI ACTAGT 1 cut(s) 676
Sse9I AATT 1 cut(s) 422
SsiI CCGC 5 cut(s) 5, 63, 66, 132, 184
SspMI CTAG 2 cut(s) 380, 677
SstI GAGCTC 1 cut(s) 612
StyD4I CCNGG 3 cut(s) 51, 256, 542
StyI CCWWGG 2 cut(s) 450, 580
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 389
TaqI TCGA 3 cut(s) 18, 165, 174
TasI AATT 1 cut(s) 422
TatI WGTACW 1 cut(s) 667
TauI GCSGC 3 cut(s) 68, 135, 186
TfiI GAWTC 1 cut(s) 560
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TseI GCWGC 2 cut(s) 342, 486
TspDTI ATGAA 4 cut(s) 251, 269, 536, 677
TspGWI ACGGA 2 cut(s) 201, 392
VpaK11BI GGWCC 1 cut(s) 254
XapI RAATTY 1 cut(s) 422
XceI RCATGY 1 cut(s) 25
XspI CTAG 2 cut(s) 380, 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.