Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008620

Physical Location & Seq

Genomic Coordinates Reverse (-)

27313126 .. 27314220

Gene Structure 1095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g25810.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTTATTTATTTTCACGTTCTTTGAATACCAAAAAGCGAAAACGCATAAAAGGAGGAGGAGGAGAGGAGAGAGAAAGCGGAGGAGCAGCGAGGAGGAAGGAAACCCTAGAGCTTCAGCTTCTGGTTTTGGGGTTTGGAAAATGGGGGATTTGGAGAAGCAAGAGACGGTGCTACTGAAGAAGGCGGCGGAGGAGGCGAATGGGGAAGAAAATGAGAGGCTTTTGGAGGGAAATGGAATGGCGGTCGTCGATTTCGACCTGCTCTGCTCGAGGGTGGCCCTGCAGACCGAGGGAAAGCTGGTGGCCAAGCTCCAGAGCTTCCCCGACGTAGAGGAAGGCGGAGACGCAGGGGACTTGGGTGGCGTCTTCAGGATGTGGGAAGGTGAAGTCCTAGATTGCTTCGATGACCGTCGTGTTGCGCTCGAATCCCTCTGTTGCCCATGCTATAGATTTGGGAAGAACATGAGACGAGCTGGTTTCGGTCCTTGTTCGTTGCAGGGAGCTCTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

171

Amino Acids

19.15

Weight (kDa)

6.63

Isoelectric Point (pI)

63.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11380
fragaria_vesca	FvH4_3g03670
malus_domestica	MD05G1328900.v1.1 MD10G1305800.v1.1
prunus_persica	Prupe.4G033900_v2.0.a1 Prupe.5G244100_v2.0.a1
pyrus_communis	pycom05g30220 pycom10g25810
rosa_chinensis	RchiOBHm_Chr5g0005711
rosa_laevigata	RLG00000031320
rosa_multiflora	Rmu_co8412991.1_g000001 Rmu_sc0000570.1_g000028 Rmu_sc0000570.1_g000031 Rmu_sc0010248.1_g000003
rosa_roxburghii	Rroxscaffold_1G00070130
rosa_rugosa	Rorug04G0417500 Rorug04G0417500
rosa_samantha	Rh5AG045100 Rh5BG043800 Rh5CG052600 Rh5DG043600
rosa_wichuraiana	Rw0G008380 Rw5G004530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	267
AciI	CCGC	5 cut(s)	79, 185, 188, 242, 339
AcoI	YGGCCR	1 cut(s)	303
AcuI	CTGAAG	3 cut(s)	99, 197, 352
AcyI	GRCGYC	1 cut(s)	363
AgsI	TTSAA	1 cut(s)	26
AluBI	AGCT	7 cut(s)	113, 119, 298, 310, 318, 473, 503
AluI	AGCT	7 cut(s)	113, 119, 298, 310, 318, 473, 503
Alw21I	GWGCWC	1 cut(s)	505
Alw26I	GTCTC	3 cut(s)	158, 336, 460
AlwNI	CAGNNNCTG	1 cut(s)	122
Ama87I	CYCGRG	1 cut(s)	268
AoxI	GGCC	2 cut(s)	276, 303
ApeKI	GCWGC	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	421
AspS9I	GGNCC	2 cut(s)	277, 482
AsuHPI	GGTGA	1 cut(s)	395
AvaI	CYCGRG	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	482
BalI	TGGCCA	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	505
BbsI	GAAGAC	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	505
BbvI	GCAGC	1 cut(s)	99
BcoDI	GTCTC	3 cut(s)	158, 336, 460
BfaI	CTAG	2 cut(s)	108, 392
BfmI	CTRYAG	2 cut(s)	281, 445
BfuAI	ACCTGC	1 cut(s)	267
BisI	GCNGC	2 cut(s)	88, 186
BlsI	GCNGC	2 cut(s)	89, 187
Bme18I	GGWCC	1 cut(s)	482
BmeT110I	CYCGRG	1 cut(s)	268
BmgT120I	GGNCC	2 cut(s)	277, 482
BpiI	GAAGAC	1 cut(s)	358
BpmI	CTGGAG	1 cut(s)	296
BsaHI	GRCGYC	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	288
BseGI	GGATG	1 cut(s)	378
BseRI	GAGGAG	7 cut(s)	70, 73, 76, 81, 97, 107, 206
BseXI	GCAGC	1 cut(s)	99
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	2 cut(s)	278, 305
BsiEI	CGRYCG	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	505
BsiHKCI	CYCGRG	1 cut(s)	268
BslFI	GGGAC	1 cut(s)	365
BsmAI	GTCTC	3 cut(s)	158, 336, 460
BsmBI	CGTCTC	3 cut(s)	158, 336, 460
BsmFI	GGGAC	1 cut(s)	365
BsnI	GGCC	2 cut(s)	278, 305
BsoBI	CYCGRG	1 cut(s)	268
Bsp1286I	GDGCHC	1 cut(s)	505
BspACI	CCGC	5 cut(s)	79, 185, 188, 242, 339
BspANI	GGCC	2 cut(s)	278, 305
BspMAI	CTGCAG	1 cut(s)	285
BspMI	ACCTGC	1 cut(s)	267
BssECI	CCNNGG	1 cut(s)	288
BssNI	GRCGYC	1 cut(s)	363
Bst4CI	ACNGT	2 cut(s)	169, 410
BstACI	GRCGYC	1 cut(s)	363
BstF5I	GGATG	1 cut(s)	378
BstHHI	GCGC	1 cut(s)	421
BstMAI	GTCTC	3 cut(s)	158, 336, 460
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstSFI	CTRYAG	2 cut(s)	281, 445
BstV1I	GCAGC	1 cut(s)	99
BstV2I	GAAGAC	1 cut(s)	358
BsuRI	GGCC	2 cut(s)	278, 305
BtsCI	GGATG	1 cut(s)	378
BveI	ACCTGC	1 cut(s)	267
CaiI	CAGNNNCTG	1 cut(s)	122
CfoI	GCGC	1 cut(s)	421
Cfr13I	GGNCC	2 cut(s)	277, 482
CseI	GACGC	2 cut(s)	352, 353
CviAII	CATG	2 cut(s)	441, 463
EaeI	YGGCCR	1 cut(s)	303
EciI	GGCGGA	2 cut(s)	203, 354
Ecl136II	GAGCTC	1 cut(s)	503
Eco24I	GRGCYC	1 cut(s)	505
Eco47I	GGWCC	1 cut(s)	482
Eco53kI	GAGCTC	1 cut(s)	503
Eco57I	CTGAAG	3 cut(s)	99, 197, 352
Eco88I	CYCGRG	1 cut(s)	268
EcoICRI	GAGCTC	1 cut(s)	503
EcoT38I	GRGCYC	1 cut(s)	505
Esp3I	CGTCTC	3 cut(s)	158, 336, 460
FaeI	CATG	2 cut(s)	444, 466
FaiI	YATR	4 cut(s)	48, 442, 447, 464
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	2 cut(s)	440, 462
Fnu4HI	GCNGC	2 cut(s)	88, 186
FokI	GGATG	1 cut(s)	385
FriOI	GRGCYC	1 cut(s)	505
Fsp4HI	GCNGC	2 cut(s)	88, 186
FspBI	CTAG	2 cut(s)	108, 392
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	2 cut(s)	88, 186
GsuI	CTGGAG	1 cut(s)	296
HaeIII	GGCC	2 cut(s)	278, 305
HgaI	GACGC	2 cut(s)	352, 353
HhaI	GCGC	1 cut(s)	421
Hin1I	GRCGYC	1 cut(s)	363
Hin1II	CATG	2 cut(s)	444, 466
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HinfI	GANTC	1 cut(s)	425
HphI	GGTGA	1 cut(s)	395
Hpy188III	TCNNGA	2 cut(s)	313, 370
Hpy99I	CGWCG	3 cut(s)	251, 329, 414
HpyAV	CCTTC	4 cut(s)	92, 175, 329, 374
HpyCH4III	ACNGT	2 cut(s)	169, 410
HpyCH4IV	ACGT	2 cut(s)	17, 327
HpyCH4V	TGCA	2 cut(s)	283, 496
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpySE526I	ACGT	2 cut(s)	17, 327
Hsp92I	GRCGYC	1 cut(s)	363
Hsp92II	CATG	2 cut(s)	444, 466
HspAI	GCGC	1 cut(s)	419
LmnI	GCTCC	3 cut(s)	84, 315, 500
LpnPI	CCDG	9 cut(s)	108, 272, 284, 293, 326, 333, 355, 459, 482
Lsp1109I	GCAGC	1 cut(s)	99
MaeI	CTAG	2 cut(s)	108, 392
MaeII	ACGT	2 cut(s)	17, 327
MboII	GAAGA	4 cut(s)	190, 218, 358, 469
MhlI	GDGCHC	1 cut(s)	505
MlsI	TGGCCA	1 cut(s)	305
MluNI	TGGCCA	1 cut(s)	305
Mox20I	TGGCCA	1 cut(s)	305
MscI	TGGCCA	1 cut(s)	305
Msp20I	TGGCCA	1 cut(s)	305
MwoI	GCNNNNNNNGC	1 cut(s)	194
NlaIII	CATG	2 cut(s)	444, 466
PaeR7I	CTCGAG	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	425
PkrI	GCNGC	2 cut(s)	89, 187
Psp124BI	GAGCTC	1 cut(s)	505
PspPI	GGNCC	2 cut(s)	277, 482
PspXI	VCTCGAGB	1 cut(s)	268
PstI	CTGCAG	1 cut(s)	285
PstNI	CAGNNNCTG	1 cut(s)	122
SacI	GAGCTC	1 cut(s)	505
SatI	GCNGC	2 cut(s)	88, 186
Sau96I	GGNCC	2 cut(s)	277, 482
SduI	GDGCHC	1 cut(s)	505
SfcI	CTRYAG	2 cut(s)	281, 445
Sfr274I	CTCGAG	1 cut(s)	268
SinI	GGWCC	1 cut(s)	482
SlaI	CTCGAG	1 cut(s)	268
SmlI	CTYRAG	1 cut(s)	268
SmoI	CTYRAG	1 cut(s)	268
SsiI	CCGC	5 cut(s)	79, 185, 188, 242, 339
SspMI	CTAG	2 cut(s)	108, 392
SstI	GAGCTC	1 cut(s)	505
TaaI	ACNGT	2 cut(s)	169, 410
TaiI	ACGT	2 cut(s)	20, 330
TaqI	TCGA	5 cut(s)	249, 255, 269, 402, 423
TaqII	GACCGA	2 cut(s)	302, 470
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	1 cut(s)	425
TseI	GCWGC	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	482
XhoI	CTCGAG	1 cut(s)	268
XspI	CTAG	2 cut(s)	108, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.