Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8412991.1

Orthogroup ID

OG0008620

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 981

Gene Structure 981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8412991.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

atgaagcgagctggttttggtcctggctttttacagggaactcttcatttagttcttgttgcgagcatccttctcaactgcattgcgtttattatcaccaagaagcgctgctttatatatctggtggttgctttcaccattacactaggaacgtatttggggtacttccgtacacagataagaaacaaatttaacataaggggtaatgatagttccatggatgattgcatctaccaccttgtctgcccatgctgcacattatctcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

89

Amino Acids

10.03

Weight (kDa)

9.24

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11380
fragaria_vesca	FvH4_3g03670
malus_domestica	MD05G1328900.v1.1 MD10G1305800.v1.1
prunus_persica	Prupe.4G033900_v2.0.a1 Prupe.5G244100_v2.0.a1
pyrus_communis	pycom05g30220 pycom10g25810
rosa_chinensis	RchiOBHm_Chr5g0005711
rosa_laevigata	RLG00000031320
rosa_multiflora	Rmu_co8412991.1_g000001 Rmu_sc0000570.1_g000028 Rmu_sc0000570.1_g000031 Rmu_sc0010248.1_g000003
rosa_roxburghii	Rroxscaffold_1G00070130
rosa_rugosa	Rorug04G0417500 Rorug04G0417500
rosa_samantha	Rh5AG045100 Rh5BG043800 Rh5CG052600 Rh5DG043600
rosa_wichuraiana	Rw0G008380 Rw5G004530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	188
AfaI	GTAC	2 cut(s)	164, 172
AfeI	AGCGCT	1 cut(s)	107
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
Aor51HI	AGCGCT	1 cut(s)	107
ApeKI	GCWGC	2 cut(s)	108, 252
ApoI	RAATTY	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	1 cut(s)	20
AsuHPI	GGTGA	2 cut(s)	88, 127
AvaII	GGWCC	1 cut(s)	20
BaeI	ACNNNNGTAYC	2 cut(s)	154, 187
BbvI	GCAGC	2 cut(s)	95, 239
BciT130I	CCWGG	1 cut(s)	24
BfaI	CTAG	1 cut(s)	146
BfoI	RGCGCY	1 cut(s)	109
BisI	GCNGC	2 cut(s)	109, 253
BlsI	GCNGC	2 cut(s)	110, 254
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	20
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	2 cut(s)	75, 237
BsaJI	CCNNGG	1 cut(s)	216
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	2 cut(s)	66, 226
BseMI	GCAATG	1 cut(s)	81
BseXI	GCAGC	2 cut(s)	95, 239
BsgI	GTGCAG	1 cut(s)	238
Bsp19I	CCATGG	1 cut(s)	216
BsrDI	GCAATG	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	216
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	24
Bst6I	CTCTTC	1 cut(s)	48
BstC8I	GCNNGC	2 cut(s)	9, 64
BstDEI	CTNAG	1 cut(s)	264
BstDSI	CCRYGG	1 cut(s)	216
BstF5I	GGATG	2 cut(s)	66, 226
BstH2I	RGCGCY	1 cut(s)	109
BstHHI	GCGC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	1 cut(s)	252
BstNI	CCWGG	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	22
BstV1I	GCAGC	2 cut(s)	95, 239
BtgI	CCRYGG	1 cut(s)	216
BtsCI	GGATG	2 cut(s)	66, 226
Cac8I	GCNNGC	2 cut(s)	9, 64
CfoI	GCGC	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	20
Csp6I	GTAC	2 cut(s)	163, 171
CviAII	CATG	2 cut(s)	217, 249
CviJI	RGCY	2 cut(s)	11, 27
CviKI_1	RGCY	2 cut(s)	11, 27
CviQI	GTAC	2 cut(s)	163, 171
DdeI	CTNAG	1 cut(s)	264
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	20
Eco47III	AGCGCT	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	2 cut(s)	220, 252
FaiI	YATR	5 cut(s)	116, 118, 197, 218, 250
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FatI	CATG	2 cut(s)	216, 248
Fnu4HI	GCNGC	2 cut(s)	109, 253
FokI	GGATG	2 cut(s)	53, 233
Fsp4HI	GCNGC	2 cut(s)	109, 253
FspBI	CTAG	1 cut(s)	146
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	2 cut(s)	109, 253
HaeII	RGCGCY	1 cut(s)	109
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	2 cut(s)	220, 252
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HphI	GGTGA	2 cut(s)	88, 127
Hpy166II	GTNNAC	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	173
HpyAV	CCTTC	1 cut(s)	80
HpyCH4IV	ACGT	1 cut(s)	152
HpyCH4V	TGCA	3 cut(s)	81, 228, 255
HpyF10VI	GCNNNNNNNGC	1 cut(s)	252
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	1 cut(s)	152
Hsp92II	CATG	2 cut(s)	220, 252
HspAI	GCGC	1 cut(s)	106
LpnPI	CCDG	4 cut(s)	9, 20, 36, 107
Lsp1109I	GCAGC	2 cut(s)	95, 239
LweI	GCATC	2 cut(s)	75, 237
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	1 cut(s)	152
MboII	GAAGA	1 cut(s)	35
MluCI	AATT	1 cut(s)	188
MseI	TTAA	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	252
NcoI	CCATGG	1 cut(s)	216
NlaIII	CATG	2 cut(s)	220, 252
PkrI	GCNGC	2 cut(s)	110, 254
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspPI	GGNCC	1 cut(s)	20
PsrI	GAACNNNNNNTAC	2 cut(s)	196, 228
RsaI	GTAC	2 cut(s)	164, 172
RsaNI	GTAC	2 cut(s)	163, 171
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	2 cut(s)	109, 253
Sau96I	GGNCC	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	24
SetI	ASST	3 cut(s)	13, 155, 240
SfaNI	GCATC	2 cut(s)	75, 237
SinI	GGWCC	1 cut(s)	20
Sse9I	AATT	1 cut(s)	188
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	1 cut(s)	216
TaiI	ACGT	1 cut(s)	155
TasI	AATT	1 cut(s)	188
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TseI	GCWGC	2 cut(s)	108, 252
TspDTI	ATGAA	2 cut(s)	17, 35
TspGWI	ACGGA	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	20
XapI	RAATTY	1 cut(s)	188
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.