Prupe.4G033900_v2.0.a1

PLAC8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0008620
Physical Location & Seq
Forward (+)
1574788 .. 1577489
2702 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G033900.1

Sequence Viewer

Length: 726 bp
ATGGGGGATTTGGAGAAGCAAGAGACGGTGCTCAAGAAGGTGGAGGAGGAAGAAAAGGAGAGATTTTTGGAGGGAAATGGGAAGTCTGTGGTCGATTTCGACGTGCTGTGCTCAACGGTGGCTTTGCAGACCCAAGGCAAGTTGGCGGCCAAGCTGCAGAGCTTTCATGGTGGAGAAGAAGATGGAGATGTTGGGGATTTGGGTGGCGTCTTCAGGATGTGGGAAGGCGAAGTCCTTGATTGCCTCGACGACCGTCGTATTGCTCTCGAATCCCTTTGTTGCCCGTGCTATAGATTTGGGAAGAACATGAGTCGAGCTGGTTTTGGTCCTTGTTCGTTGCAGGGAACTCTTCATTTGATTCTTGCTGTTCTCGTCATTCTCAACTGCGTTGCCTTCATTGTTACCAAGAAGCAATGCTTTATATATTTGGCCGTTGCTTTCACCATTTCACTAGGAACATATTTGGGGTACTTCCGTACACAGATGAAAAAGAAATTTAACATCAGGGGTAGTGATAGTTCCTTGGATGATTGCATCTACCATCTTATCTGCCCATGCTGTGCATTATGTCAGGAATCCAGAACATTGGAGATGAACAATGTCCAAGATGGCACCTGGCATGGTCGGGGTGATACAATATACATAGGTAGCCTTGGAGAAGGGGGAAAGTCGATCTTTGAGCTACAACCGCCTCCAATTGTGTCAATCAAATCCCCTGACCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

242

Amino Acids

26.61

Weight (kDa)

5.2

Isoelectric Point (pI)

34.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 611
AciI CCGC 2 cut(s) 146, 689
AcoI YGGCCR 2 cut(s) 147, 429
AcsI RAATTY 1 cut(s) 494
AcuI CTGAAG 1 cut(s) 196
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 2 cut(s) 470, 478
AjiI CACGTC 1 cut(s) 103
AjnI CCWGG 1 cut(s) 614
AluBI AGCT 4 cut(s) 154, 162, 317, 682
AluI AGCT 4 cut(s) 154, 162, 317, 682
Alw21I GWGCWC 2 cut(s) 33, 113
Alw26I GTCTC 1 cut(s) 17
AoxI GGCC 2 cut(s) 147, 429
ApeKI GCWGC 1 cut(s) 154
ApoI RAATTY 1 cut(s) 494
AspS9I GGNCC 1 cut(s) 326
AsuHPI GGTGA 2 cut(s) 433, 641
AvaII GGWCC 1 cut(s) 326
BaeI ACNNNNGTAYC 2 cut(s) 460, 493
BanI GGYRCC 1 cut(s) 611
BbsI GAAGAC 1 cut(s) 202
Bbv12I GWGCWC 2 cut(s) 33, 113
BbvI GCAGC 1 cut(s) 141
BccI CCATC 3 cut(s) 176, 549, 602
BceAI ACGGC 1 cut(s) 416
BciT130I CCWGG 1 cut(s) 616
BcoDI GTCTC 1 cut(s) 17
BfaI CTAG 1 cut(s) 452
BfmI CTRYAG 2 cut(s) 155, 289
BisI GCNGC 2 cut(s) 147, 155
BlsI GCNGC 2 cut(s) 148, 156
Bme1390I CCNGG 1 cut(s) 616
Bme18I GGWCC 1 cut(s) 326
BmgBI CACGTC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 1 cut(s) 613
BmrFI CCNGG 1 cut(s) 616
BmsI GCATC 1 cut(s) 543
BoxI GACNNNNGTC 1 cut(s) 252
BpiI GAAGAC 1 cut(s) 202
BpuEI CTTGAG 1 cut(s) 17
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 3 cut(s) 133, 522, 652
Bse3DI GCAATG 1 cut(s) 419
BseBI CCWGG 1 cut(s) 616
BseDI CCNNGG 3 cut(s) 133, 522, 652
BseGI GGATG 2 cut(s) 222, 532
BseMI GCAATG 1 cut(s) 419
BseRI GAGGAG 1 cut(s) 59
BseXI GCAGC 1 cut(s) 141
Bsh1285I CGRYCG 1 cut(s) 253
BshFI GGCC 2 cut(s) 149, 431
BshNI GGYRCC 1 cut(s) 611
BsiEI CGRYCG 1 cut(s) 253
BsiHKAI GWGCWC 2 cut(s) 33, 113
BsmAI GTCTC 1 cut(s) 17
BsmBI CGTCTC 1 cut(s) 17
BsnI GGCC 2 cut(s) 149, 431
Bsp1286I GDGCHC 2 cut(s) 33, 113
Bsp143I GATC 1 cut(s) 672
BspACI CCGC 2 cut(s) 146, 689
BspANI GGCC 2 cut(s) 149, 431
BspLI GGNNCC 1 cut(s) 613
BspMAI CTGCAG 1 cut(s) 159
BspT107I GGYRCC 1 cut(s) 611
BsrDI GCAATG 1 cut(s) 419
BssECI CCNNGG 3 cut(s) 133, 522, 652
BssMI GATC 1 cut(s) 672
BssNI GRCGYC 1 cut(s) 207
BssT1I CCWWGG 3 cut(s) 133, 522, 652
Bst2UI CCWGG 1 cut(s) 616
Bst4CI ACNGT 3 cut(s) 28, 118, 254
Bst6I CTCTTC 1 cut(s) 354
BstACI GRCGYC 1 cut(s) 207
BstF5I GGATG 2 cut(s) 222, 532
BstKTI GATC 1 cut(s) 675
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 1 cut(s) 672
BstMCI CGRYCG 1 cut(s) 253
BstMWI GCNNNNNNNGC 1 cut(s) 688
BstNI CCWGG 1 cut(s) 616
BstPAI GACNNNNGTC 1 cut(s) 252
BstSCI CCNGG 1 cut(s) 614
BstSFI CTRYAG 2 cut(s) 155, 289
BstV1I GCAGC 1 cut(s) 141
BstV2I GAAGAC 1 cut(s) 202
BstXI CCANNNNNNTGG 1 cut(s) 586
BsuRI GGCC 2 cut(s) 149, 431
BtrI CACGTC 1 cut(s) 103
BtsCI GGATG 2 cut(s) 222, 532
Cfr13I GGNCC 1 cut(s) 326
CseI GACGC 1 cut(s) 196
Csp6I GTAC 2 cut(s) 469, 477
CviAII CATG 4 cut(s) 167, 307, 555, 620
CviJI RGCY 8 cut(s) 122, 149, 154, 162, 317, 431, 651, 682
CviKI_1 RGCY 8 cut(s) 122, 149, 154, 162, 317, 431, 651, 682
CviQI GTAC 2 cut(s) 469, 477
DpnI GATC 1 cut(s) 674
DpnII GATC 1 cut(s) 672
EaeI YGGCCR 2 cut(s) 147, 429
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco130I CCWWGG 3 cut(s) 133, 522, 652
Eco47I GGWCC 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 614
EcoT14I CCWWGG 3 cut(s) 133, 522, 652
ErhI CCWWGG 3 cut(s) 133, 522, 652
Esp3I CGTCTC 1 cut(s) 17
FaeI CATG 4 cut(s) 170, 310, 558, 623
FalI AAGNNNNNCTT 4 cut(s) 401, 433, 659, 691
FatI CATG 4 cut(s) 166, 306, 554, 619
Fnu4HI GCNGC 2 cut(s) 147, 155
FokI GGATG 2 cut(s) 229, 539
Fsp4HI GCNGC 2 cut(s) 147, 155
FspBI CTAG 1 cut(s) 452
GluI GCNGC 2 cut(s) 147, 155
HaeIII GGCC 2 cut(s) 149, 431
HgaI GACGC 1 cut(s) 196
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 4 cut(s) 170, 310, 558, 623
HinfI GANTC 4 cut(s) 269, 310, 358, 575
HphI GGTGA 2 cut(s) 433, 641
Hpy166II GTNNAC 1 cut(s) 479
Hpy188III TCNNGA 5 cut(s) 34, 214, 266, 572, 579
Hpy8I GTNNAC 1 cut(s) 479
Hpy99I CGWCG 3 cut(s) 104, 251, 258
HpyAV CCTTC 4 cut(s) 31, 218, 403, 653
HpyCH4III ACNGT 3 cut(s) 28, 118, 254
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 5 cut(s) 127, 157, 340, 534, 563
HpyF10VI GCNNNNNNNGC 1 cut(s) 688
HpySE526I ACGT 1 cut(s) 102
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 4 cut(s) 170, 310, 558, 623
Kzo9I GATC 1 cut(s) 672
LpnPI CCDG 8 cut(s) 199, 303, 326, 490, 557, 592, 601, 628
Lsp1109I GCAGC 1 cut(s) 141
LweI GCATC 1 cut(s) 543
MaeI CTAG 1 cut(s) 452
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 400
MalI GATC 1 cut(s) 674
MboI GATC 1 cut(s) 672
MboII GAAGA 6 cut(s) 62, 188, 191, 202, 313, 341
MfeI CAATTG 1 cut(s) 696
MhlI GDGCHC 2 cut(s) 33, 113
MluCI AATT 2 cut(s) 494, 696
MlyI GAGTC 1 cut(s) 319
MnlI CCTC 5 cut(s) 37, 40, 64, 254, 702
MseI TTAA 1 cut(s) 498
MspR9I CCNGG 1 cut(s) 616
MunI CAATTG 1 cut(s) 696
MvaI CCWGG 1 cut(s) 616
MwoI GCNNNNNNNGC 1 cut(s) 688
NdeII GATC 1 cut(s) 672
NlaIII CATG 4 cut(s) 170, 310, 558, 623
NlaIV GGNNCC 1 cut(s) 613
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PfeI GAWTC 3 cut(s) 269, 358, 575
PkrI GCNGC 2 cut(s) 148, 156
PleI GAGTC 1 cut(s) 318
PpsI GAGTC 1 cut(s) 318
PshAI GACNNNNGTC 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 614
PspGI CCWGG 1 cut(s) 614
PspN4I GGNNCC 1 cut(s) 613
PspPI GGNCC 1 cut(s) 326
PsrI GAACNNNNNNTAC 2 cut(s) 502, 534
PstI CTGCAG 1 cut(s) 159
RsaI GTAC 2 cut(s) 470, 478
RsaNI GTAC 2 cut(s) 469, 477
SaqAI TTAA 1 cut(s) 498
SatI GCNGC 2 cut(s) 147, 155
Sau3AI GATC 1 cut(s) 672
Sau96I GGNCC 1 cut(s) 326
SchI GAGTC 1 cut(s) 319
ScrFI CCNGG 1 cut(s) 616
SduI GDGCHC 2 cut(s) 33, 113
SetI ASST 8 cut(s) 42, 105, 156, 164, 319, 617, 649, 684
SfaNI GCATC 1 cut(s) 543
SfcI CTRYAG 2 cut(s) 155, 289
SinI GGWCC 1 cut(s) 326
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 2 cut(s) 494, 696
SsiI CCGC 2 cut(s) 146, 689
SspMI CTAG 1 cut(s) 452
StyD4I CCNGG 1 cut(s) 614
StyI CCWWGG 3 cut(s) 133, 522, 652
TaaI ACNGT 3 cut(s) 28, 118, 254
TaiI ACGT 1 cut(s) 105
TaqI TCGA 6 cut(s) 93, 99, 246, 267, 313, 671
TasI AATT 2 cut(s) 494, 696
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 3 cut(s) 269, 358, 575
Tru1I TTAA 1 cut(s) 498
Tru9I TTAA 1 cut(s) 498
TseI GCWGC 1 cut(s) 154
TspDTI ATGAA 5 cut(s) 155, 341, 385, 500, 608
TspGWI ACGGA 1 cut(s) 464
VpaK11BI GGWCC 1 cut(s) 326
XapI RAATTY 1 cut(s) 494
XspI CTAG 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.