Rh5CG052600

PLAC8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0008620
Physical Location & Seq
Forward (+)
3771931 .. 3774423
2493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG052600.1

Sequence Viewer

Length: 792 bp
ATGGGGGATTTAGAGAAGCAAGCAGAGAGGGTTGTGCTGAGCAAGGACGAGGCGGAAGAGGAGGAGATGGAGAGGCTGGTCGGCGGCGGCGGAATGGCGGTGTTGGATTTCGACATGCTCTGCTCCACCGTCGCCTTACAGACCCAGGGCAAGTCCGCCGCCAAGTTCCAGAGCTTTGGTGCCGGAGAAGAAGAGGAAGAAGAAGAAGCAGCTGAGGTTGGCGATTTCGGCGGCGTGTTCCGGATGTGGGAGGGTGAGCTTCTCGATTGGTTCGACGATCGCCGCGTCGCTATTCAGTCGGCTTGCTGTCCGTGCTATACATTTGGGAAGAACATGAAGCGAGCTGGTTTTGGTCCTGGCTTTTTACAGGGAACTCTTCATTTAGTTCTTGTTGCGAGCATCCTTCTCAACTGCATTGCGTTTATTATCACCAAGAAGCGCTGCTTTATATATCTGGTGGTTGCTTTCACCATTACACTAGGAACGTATTTGGGGTACTTCCGTACACAGATAAGAAACAAATTTAACATAAGGGGTAATGATAGTTCCATGGATGATTGCATCTACCACCTTGTCTGCCCATGCTGCACATTATCTCAGGAAGCCAGAACATTAGAGATGAACAATGTCCAAGATGGCACCTGGCATGGCAGGGGCGATTCAATATACATAGGCAGCCTTGGAGAAGGAGGAAAGTCTTTCTTTGAGCTCCAAGCACCTCCTCTTGTGTCAATCAAGTCCCCCGACCTCTGCAACGCGCAAAAAAGTACAGCGACTTGTGCATATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

263

Amino Acids

28.99

Weight (kDa)

4.79

Isoelectric Point (pI)

45.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 83 - 203 1.7e-20 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 179, 638
AccII CGCG 2 cut(s) 285, 758
AccIII TCCGGA 1 cut(s) 240
AciI CCGC 9 cut(s) 53, 84, 87, 90, 98, 156, 159, 231, 283
AcsI RAATTY 1 cut(s) 521
AfaI GTAC 3 cut(s) 497, 505, 769
AfeI AGCGCT 1 cut(s) 440
AfiI CCNNNNNNNGG 1 cut(s) 247
AgsI TTSAA 1 cut(s) 663
AjnI CCWGG 3 cut(s) 144, 355, 641
AluBI AGCT 5 cut(s) 174, 212, 259, 344, 709
AluI AGCT 5 cut(s) 174, 212, 259, 344, 709
Alw21I GWGCWC 1 cut(s) 711
Aor13HI TCCGGA 1 cut(s) 240
Aor51HI AGCGCT 1 cut(s) 440
ApeKI GCWGC 4 cut(s) 209, 441, 585, 675
ApoI RAATTY 1 cut(s) 521
AspLEI GCGC 2 cut(s) 441, 760
AspS9I GGNCC 1 cut(s) 353
AsuHPI GGTGA 3 cut(s) 266, 421, 460
AvaII GGWCC 1 cut(s) 353
BaeI ACNNNNGTAYC 2 cut(s) 487, 520
BanI GGYRCC 2 cut(s) 179, 638
BanII GRGCYC 1 cut(s) 711
Bbv12I GWGCWC 1 cut(s) 711
BbvCI CCTCAGC 1 cut(s) 213
BbvI GCAGC 4 cut(s) 221, 428, 572, 687
BccI CCATC 2 cut(s) 61, 629
BciT130I CCWGG 3 cut(s) 146, 357, 643
BfaI CTAG 1 cut(s) 479
BfoI RGCGCY 1 cut(s) 442
BisI GCNGC 9 cut(s) 85, 88, 159, 210, 232, 283, 442, 586, 676
BlpI GCTNAGC 1 cut(s) 38
BlsI GCNGC 9 cut(s) 86, 89, 160, 211, 233, 284, 443, 587, 677
Bme1390I CCNGG 3 cut(s) 146, 357, 643
Bme18I GGWCC 1 cut(s) 353
BmgT120I GGNCC 1 cut(s) 353
BmiI GGNNCC 2 cut(s) 181, 640
BmrFI CCNGG 3 cut(s) 146, 357, 643
BmsI GCATC 2 cut(s) 408, 570
Bpu10I CCTNAGC 1 cut(s) 213
Bpu1102I GCTNAGC 1 cut(s) 38
BsaJI CCNNGG 4 cut(s) 144, 145, 549, 679
BsaWI WCCGGW 1 cut(s) 240
Bsc4I CCNNNNNNNGG 1 cut(s) 247
Bse3DI GCAATG 1 cut(s) 414
BseAI TCCGGA 1 cut(s) 240
BseBI CCWGG 3 cut(s) 146, 357, 643
BseDI CCNNGG 4 cut(s) 144, 145, 549, 679
BseGI GGATG 3 cut(s) 249, 399, 559
BseLI CCNNNNNNNGG 1 cut(s) 247
BseMI GCAATG 1 cut(s) 414
BseMII CTCAG 3 cut(s) 29, 204, 611
BseRI GAGGAG 3 cut(s) 74, 77, 711
BseXI GCAGC 4 cut(s) 221, 428, 572, 687
BsgI GTGCAG 1 cut(s) 571
Bsh1236I CGCG 2 cut(s) 285, 758
Bsh1285I CGRYCG 1 cut(s) 280
BshNI GGYRCC 2 cut(s) 179, 638
BsiEI CGRYCG 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 711
BsiSI CCGG 2 cut(s) 183, 241
BslFI GGGAC 1 cut(s) 724
BslI CCNNNNNNNGG 1 cut(s) 247
BsmFI GGGAC 1 cut(s) 724
Bsp1286I GDGCHC 1 cut(s) 711
Bsp13I TCCGGA 1 cut(s) 240
Bsp143I GATC 1 cut(s) 277
Bsp1720I GCTNAGC 1 cut(s) 38
Bsp19I CCATGG 1 cut(s) 549
BspACI CCGC 9 cut(s) 53, 84, 87, 90, 98, 156, 159, 231, 283
BspCNI CTCAG 3 cut(s) 30, 205, 610
BspEI TCCGGA 1 cut(s) 240
BspFNI CGCG 2 cut(s) 285, 758
BspHI TCATGA 1 cut(s) 788
BspLI GGNNCC 2 cut(s) 181, 640
BspT107I GGYRCC 2 cut(s) 179, 638
BsrDI GCAATG 1 cut(s) 414
BssECI CCNNGG 4 cut(s) 144, 145, 549, 679
BssMI GATC 1 cut(s) 277
BssT1I CCWWGG 2 cut(s) 549, 679
Bst2UI CCWGG 3 cut(s) 146, 357, 643
Bst4CI ACNGT 1 cut(s) 130
Bst6I CTCTTC 3 cut(s) 51, 186, 381
BstC8I GCNNGC 4 cut(s) 21, 304, 342, 397
BstDEI CTNAG 3 cut(s) 38, 213, 597
BstDSI CCRYGG 1 cut(s) 549
BstF5I GGATG 3 cut(s) 249, 399, 559
BstFNI CGCG 2 cut(s) 285, 758
BstH2I RGCGCY 1 cut(s) 442
BstHHI GCGC 2 cut(s) 441, 760
BstKTI GATC 1 cut(s) 280
BstMBI GATC 1 cut(s) 277
BstMCI CGRYCG 1 cut(s) 280
BstMWI GCNNNNNNNGC 4 cut(s) 228, 312, 585, 779
BstNI CCWGG 3 cut(s) 146, 357, 643
BstNSI RCATGY 1 cut(s) 118
BstSCI CCNGG 3 cut(s) 144, 355, 641
BstUI CGCG 2 cut(s) 285, 758
BstV1I GCAGC 4 cut(s) 221, 428, 572, 687
BstXI CCANNNNNNTGG 1 cut(s) 176
BtgI CCRYGG 1 cut(s) 549
BtsCI GGATG 3 cut(s) 249, 399, 559
Cac8I GCNNGC 4 cut(s) 21, 304, 342, 397
CciI TCATGA 1 cut(s) 788
CfoI GCGC 2 cut(s) 441, 760
Cfr13I GGNCC 1 cut(s) 353
CseI GACGC 1 cut(s) 274
Csp6I GTAC 3 cut(s) 496, 504, 768
CviAII CATG 6 cut(s) 115, 334, 550, 582, 647, 789
CviQI GTAC 3 cut(s) 496, 504, 768
DdeI CTNAG 3 cut(s) 38, 213, 597
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
Eam1104I CTCTTC 3 cut(s) 51, 186, 381
EarI CTCTTC 3 cut(s) 51, 186, 381
EciI GGCGGA 3 cut(s) 68, 105, 145
Ecl136II GAGCTC 1 cut(s) 709
Eco130I CCWWGG 2 cut(s) 549, 679
Eco24I GRGCYC 1 cut(s) 711
Eco47I GGWCC 1 cut(s) 353
Eco47III AGCGCT 1 cut(s) 440
Eco53kI GAGCTC 1 cut(s) 709
EcoICRI GAGCTC 1 cut(s) 709
EcoRII CCWGG 3 cut(s) 144, 355, 641
EcoT14I CCWWGG 2 cut(s) 549, 679
EcoT38I GRGCYC 1 cut(s) 711
ErhI CCWWGG 2 cut(s) 549, 679
FaeI CATG 6 cut(s) 118, 337, 553, 585, 650, 792
FalI AAGNNNNNCTT 4 cut(s) 428, 460, 686, 718
FaqI GGGAC 1 cut(s) 724
FatI CATG 6 cut(s) 114, 333, 549, 581, 646, 788
Fnu4HI GCNGC 9 cut(s) 85, 88, 159, 210, 232, 283, 442, 586, 676
FokI GGATG 3 cut(s) 256, 386, 566
FriOI GRGCYC 1 cut(s) 711
Fsp4HI GCNGC 9 cut(s) 85, 88, 159, 210, 232, 283, 442, 586, 676
FspBI CTAG 1 cut(s) 479
GlaI GCGC 2 cut(s) 440, 759
GluI GCNGC 9 cut(s) 85, 88, 159, 210, 232, 283, 442, 586, 676
HaeII RGCGCY 1 cut(s) 442
HapII CCGG 2 cut(s) 183, 241
HgaI GACGC 1 cut(s) 274
HhaI GCGC 2 cut(s) 441, 760
Hin1II CATG 6 cut(s) 118, 337, 553, 585, 650, 792
Hin6I GCGC 2 cut(s) 439, 758
HinP1I GCGC 2 cut(s) 439, 758
HinfI GANTC 1 cut(s) 659
HpaII CCGG 2 cut(s) 183, 241
HphI GGTGA 3 cut(s) 266, 421, 460
Hpy166II GTNNAC 1 cut(s) 506
Hpy188III TCNNGA 5 cut(s) 169, 241, 263, 599, 789
Hpy8I GTNNAC 1 cut(s) 506
Hpy99I CGWCG 3 cut(s) 134, 278, 290
HpyAV CCTTC 2 cut(s) 413, 680
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 1 cut(s) 485
HpyCH4V TGCA 5 cut(s) 414, 561, 588, 753, 782
HpyF10VI GCNNNNNNNGC 4 cut(s) 228, 312, 585, 779
HpyF3I CTNAG 3 cut(s) 38, 213, 597
HpySE526I ACGT 1 cut(s) 485
Hsp92II CATG 6 cut(s) 118, 337, 553, 585, 650, 792
HspAI GCGC 2 cut(s) 439, 758
Kpn2I TCCGGA 1 cut(s) 240
Kzo9I GATC 1 cut(s) 277
LmnI GCTCC 2 cut(s) 128, 714
Lsp1109I GCAGC 4 cut(s) 221, 428, 572, 687
LweI GCATC 2 cut(s) 408, 570
MaeI CTAG 1 cut(s) 479
MaeII ACGT 1 cut(s) 485
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 8 cut(s) 68, 200, 203, 209, 212, 215, 340, 368
MhlI GDGCHC 1 cut(s) 711
MluCI AATT 1 cut(s) 521
MmeI TCCRAC 1 cut(s) 84
MroI TCCGGA 1 cut(s) 240
MseI TTAA 1 cut(s) 525
MslI CAYNNNNRTG 1 cut(s) 787
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 2 cut(s) 183, 241
MspR9I CCNGG 3 cut(s) 146, 357, 643
MvaI CCWGG 3 cut(s) 146, 357, 643
MvnI CGCG 2 cut(s) 285, 758
MwoI GCNNNNNNNGC 4 cut(s) 228, 312, 585, 779
NcoI CCATGG 1 cut(s) 549
NdeII GATC 1 cut(s) 277
NlaIII CATG 6 cut(s) 118, 337, 553, 585, 650, 792
NlaIV GGNNCC 2 cut(s) 181, 640
NspI RCATGY 1 cut(s) 118
PagI TCATGA 1 cut(s) 788
PasI CCCWGGG 1 cut(s) 145
PcsI WCGNNNNNNNCGW 2 cut(s) 270, 282
PfeI GAWTC 1 cut(s) 659
PkrI GCNGC 9 cut(s) 86, 89, 160, 211, 233, 284, 443, 587, 677
Ple19I CGATCG 1 cut(s) 280
Psp124BI GAGCTC 1 cut(s) 711
Psp6I CCWGG 3 cut(s) 144, 355, 641
PspGI CCWGG 3 cut(s) 144, 355, 641
PspN4I GGNNCC 2 cut(s) 181, 640
PspPI GGNCC 1 cut(s) 353
PsrI GAACNNNNNNTAC 2 cut(s) 529, 561
PvuI CGATCG 1 cut(s) 280
PvuII CAGCTG 1 cut(s) 212
RsaI GTAC 3 cut(s) 497, 505, 769
RsaNI GTAC 3 cut(s) 496, 504, 768
RseI CAYNNNNRTG 1 cut(s) 787
SacI GAGCTC 1 cut(s) 711
SaqAI TTAA 1 cut(s) 525
SatI GCNGC 9 cut(s) 85, 88, 159, 210, 232, 283, 442, 586, 676
Sau3AI GATC 1 cut(s) 277
Sau96I GGNCC 1 cut(s) 353
ScrFI CCNGG 3 cut(s) 146, 357, 643
SduI GDGCHC 1 cut(s) 711
SfaNI GCATC 2 cut(s) 408, 570
SinI GGWCC 1 cut(s) 353
SmiMI CAYNNNNRTG 1 cut(s) 787
Sse9I AATT 1 cut(s) 521
SsiI CCGC 9 cut(s) 53, 84, 87, 90, 98, 156, 159, 231, 283
SspMI CTAG 1 cut(s) 479
SstI GAGCTC 1 cut(s) 711
StyD4I CCNGG 3 cut(s) 144, 355, 641
StyI CCWWGG 2 cut(s) 549, 679
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 1 cut(s) 488
TaqI TCGA 3 cut(s) 111, 264, 273
TasI AATT 1 cut(s) 521
TatI WGTACW 1 cut(s) 767
TauI GCSGC 5 cut(s) 87, 90, 161, 234, 285
TfiI GAWTC 1 cut(s) 659
Tru1I TTAA 1 cut(s) 525
Tru9I TTAA 1 cut(s) 525
TseI GCWGC 4 cut(s) 209, 441, 585, 675
TspDTI ATGAA 4 cut(s) 350, 368, 635, 777
TspGWI ACGGA 2 cut(s) 300, 491
VpaK11BI GGWCC 1 cut(s) 353
XapI RAATTY 1 cut(s) 521
XceI RCATGY 1 cut(s) 118
XspI CTAG 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.