Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000570.1

Orthogroup ID

OG0008620

Physical Location & Seq

Genomic Coordinates Forward (+)

148534 .. 150508

Gene Structure 1975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000570.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

atgggggatttagagaagcaagcagagagggttgtgctgagcagggacgaggcggaagaggaggagatggagaggctggtcggcggcggcggcggcggcggcggaatggcggtgttggatttcgacatgctctgctccaccgtcgcattacagacccagggcaagtccgccgccaagttccagagctttggtgccggagaagaagaagaagaagaagcagctgaggttggcgatttcggcggcgtgttccggatgtgggagggtgagcttctcgattggttcgacgatcgccgcgtcgctattcagtcggcttgctgtccgtgctatacatttgggaagaacatgaagcgagctggttttggtcctggctttttacagggaactcttcatttagttcttgttgcgagcatccttctcaactgcattgcgtttattatcaccaagaagcgctgctttatatatctggtggttgctttcaccattacactaggaacgtatttggggtacttccgtacacagataagaaacaaatttaacataaggggtaatgatagttccatggatgattgcatctaccaccttgtctgcccatgctgcacattatctcaggaagccagaacattagagatgaacaatgtccaagatggcacctggcatggcaggggtgattcaatatacataggcagccttggagaaggaggaaagtctttctttgagctccaagcacctcctcttgtgtcaatcaagtcccccgacctctgcaacgcgcaaaaaagtacagcgacttgtgcatattcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

266

Amino Acids

29.11

Weight (kDa)

4.83

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11380
fragaria_vesca	FvH4_3g03670
malus_domestica	MD05G1328900.v1.1 MD10G1305800.v1.1
prunus_persica	Prupe.4G033900_v2.0.a1 Prupe.5G244100_v2.0.a1
pyrus_communis	pycom05g30220 pycom10g25810
rosa_chinensis	RchiOBHm_Chr5g0005711
rosa_laevigata	RLG00000031320
rosa_multiflora	Rmu_co8412991.1_g000001 Rmu_sc0000570.1_g000028 Rmu_sc0000570.1_g000031 Rmu_sc0010248.1_g000003
rosa_roxburghii	Rroxscaffold_1G00070130
rosa_rugosa	Rorug04G0417500 Rorug04G0417500
rosa_samantha	Rh5AG045100 Rh5BG043800 Rh5CG052600 Rh5DG043600
rosa_wichuraiana	Rw0G008380 Rw5G004530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	191, 647
AccII	CGCG	2 cut(s)	294, 767
AccIII	TCCGGA	1 cut(s)	249
AcsI	RAATTY	1 cut(s)	530
AfaI	GTAC	3 cut(s)	506, 514, 778
AfeI	AGCGCT	1 cut(s)	449
AfiI	CCNNNNNNNGG	1 cut(s)	256
AgsI	TTSAA	1 cut(s)	672
AjnI	CCWGG	3 cut(s)	156, 364, 650
AluBI	AGCT	5 cut(s)	186, 221, 268, 353, 718
AluI	AGCT	5 cut(s)	186, 221, 268, 353, 718
Alw21I	GWGCWC	1 cut(s)	720
Aor13HI	TCCGGA	1 cut(s)	249
Aor51HI	AGCGCT	1 cut(s)	449
ApeKI	GCWGC	4 cut(s)	218, 450, 594, 684
ApoI	RAATTY	1 cut(s)	530
AspLEI	GCGC	2 cut(s)	450, 769
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	4 cut(s)	275, 430, 469, 677
AvaII	GGWCC	1 cut(s)	362
BaeI	ACNNNNGTAYC	2 cut(s)	496, 529
BanI	GGYRCC	2 cut(s)	191, 647
BanII	GRGCYC	1 cut(s)	720
Bbv12I	GWGCWC	1 cut(s)	720
BbvCI	CCTCAGC	1 cut(s)	222
BbvI	GCAGC	4 cut(s)	230, 437, 581, 696
BccI	CCATC	2 cut(s)	61, 638
BciT130I	CCWGG	3 cut(s)	158, 366, 652
BfaI	CTAG	1 cut(s)	488
BfoI	RGCGCY	1 cut(s)	451
BlpI	GCTNAGC	1 cut(s)	38
Bme1390I	CCNGG	3 cut(s)	158, 366, 652
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	2 cut(s)	193, 649
BmrFI	CCNGG	3 cut(s)	158, 366, 652
BmsI	GCATC	2 cut(s)	417, 579
Bpu10I	CCTNAGC	1 cut(s)	222
Bpu1102I	GCTNAGC	1 cut(s)	38
BsaJI	CCNNGG	4 cut(s)	156, 157, 558, 688
BsaWI	WCCGGW	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse3DI	GCAATG	1 cut(s)	423
BseAI	TCCGGA	1 cut(s)	249
BseBI	CCWGG	3 cut(s)	158, 366, 652
BseDI	CCNNGG	4 cut(s)	156, 157, 558, 688
BseGI	GGATG	3 cut(s)	258, 408, 568
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	3 cut(s)	29, 213, 620
BseRI	GAGGAG	3 cut(s)	74, 77, 720
BseXI	GCAGC	4 cut(s)	230, 437, 581, 696
BsgI	GTGCAG	1 cut(s)	580
Bsh1236I	CGCG	2 cut(s)	294, 767
Bsh1285I	CGRYCG	1 cut(s)	289
BshNI	GGYRCC	2 cut(s)	191, 647
BsiEI	CGRYCG	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	720
BsiSI	CCGG	2 cut(s)	195, 250
BslFI	GGGAC	2 cut(s)	59, 733
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmFI	GGGAC	2 cut(s)	59, 733
Bsp1286I	GDGCHC	1 cut(s)	720
Bsp13I	TCCGGA	1 cut(s)	249
Bsp143I	GATC	1 cut(s)	286
Bsp1720I	GCTNAGC	1 cut(s)	38
Bsp19I	CCATGG	1 cut(s)	558
BspCNI	CTCAG	3 cut(s)	30, 214, 619
BspEI	TCCGGA	1 cut(s)	249
BspFNI	CGCG	2 cut(s)	294, 767
BspHI	TCATGA	1 cut(s)	797
BspLI	GGNNCC	2 cut(s)	193, 649
BspT107I	GGYRCC	2 cut(s)	191, 647
BsrDI	GCAATG	1 cut(s)	423
BssECI	CCNNGG	4 cut(s)	156, 157, 558, 688
BssMI	GATC	1 cut(s)	286
BssT1I	CCWWGG	2 cut(s)	558, 688
Bst2UI	CCWGG	3 cut(s)	158, 366, 652
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	2 cut(s)	51, 390
BstC8I	GCNNGC	4 cut(s)	21, 313, 351, 406
BstDEI	CTNAG	3 cut(s)	38, 222, 606
BstDSI	CCRYGG	1 cut(s)	558
BstF5I	GGATG	3 cut(s)	258, 408, 568
BstFNI	CGCG	2 cut(s)	294, 767
BstH2I	RGCGCY	1 cut(s)	451
BstHHI	GCGC	2 cut(s)	450, 769
BstKTI	GATC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	286
BstMCI	CGRYCG	1 cut(s)	289
BstMWI	GCNNNNNNNGC	8 cut(s)	90, 93, 96, 99, 237, 321, 594, 788
BstNI	CCWGG	3 cut(s)	158, 366, 652
BstNSI	RCATGY	1 cut(s)	130
BstSCI	CCNGG	3 cut(s)	156, 364, 650
BstUI	CGCG	2 cut(s)	294, 767
BstV1I	GCAGC	4 cut(s)	230, 437, 581, 696
BstXI	CCANNNNNNTGG	1 cut(s)	188
BtgI	CCRYGG	1 cut(s)	558
BtsCI	GGATG	3 cut(s)	258, 408, 568
Cac8I	GCNNGC	4 cut(s)	21, 313, 351, 406
CciI	TCATGA	1 cut(s)	797
CfoI	GCGC	2 cut(s)	450, 769
Cfr13I	GGNCC	1 cut(s)	362
CseI	GACGC	1 cut(s)	283
Csp6I	GTAC	3 cut(s)	505, 513, 777
CviAII	CATG	6 cut(s)	127, 343, 559, 591, 656, 798
CviQI	GTAC	3 cut(s)	505, 513, 777
DdeI	CTNAG	3 cut(s)	38, 222, 606
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
Eam1104I	CTCTTC	2 cut(s)	51, 390
EarI	CTCTTC	2 cut(s)	51, 390
EciI	GGCGGA	3 cut(s)	68, 117, 157
Ecl136II	GAGCTC	1 cut(s)	718
Eco130I	CCWWGG	2 cut(s)	558, 688
Eco24I	GRGCYC	1 cut(s)	720
Eco47I	GGWCC	1 cut(s)	362
Eco47III	AGCGCT	1 cut(s)	449
Eco53kI	GAGCTC	1 cut(s)	718
EcoICRI	GAGCTC	1 cut(s)	718
EcoRII	CCWGG	3 cut(s)	156, 364, 650
EcoT14I	CCWWGG	2 cut(s)	558, 688
EcoT38I	GRGCYC	1 cut(s)	720
ErhI	CCWWGG	2 cut(s)	558, 688
FaeI	CATG	6 cut(s)	130, 346, 562, 594, 659, 801
FalI	AAGNNNNNCTT	4 cut(s)	437, 469, 695, 727
FaqI	GGGAC	2 cut(s)	59, 733
FatI	CATG	6 cut(s)	126, 342, 558, 590, 655, 797
FokI	GGATG	3 cut(s)	265, 395, 575
FriOI	GRGCYC	1 cut(s)	720
FspBI	CTAG	1 cut(s)	488
GlaI	GCGC	2 cut(s)	449, 768
HaeII	RGCGCY	1 cut(s)	451
HapII	CCGG	2 cut(s)	195, 250
HgaI	GACGC	1 cut(s)	283
HhaI	GCGC	2 cut(s)	450, 769
Hin1II	CATG	6 cut(s)	130, 346, 562, 594, 659, 801
Hin6I	GCGC	2 cut(s)	448, 767
HinP1I	GCGC	2 cut(s)	448, 767
HinfI	GANTC	1 cut(s)	668
HpaII	CCGG	2 cut(s)	195, 250
HphI	GGTGA	4 cut(s)	275, 430, 469, 677
Hpy166II	GTNNAC	1 cut(s)	515
Hpy188III	TCNNGA	5 cut(s)	181, 250, 272, 608, 798
Hpy8I	GTNNAC	1 cut(s)	515
Hpy99I	CGWCG	3 cut(s)	146, 287, 299
HpyAV	CCTTC	2 cut(s)	422, 689
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	494
HpyCH4V	TGCA	5 cut(s)	423, 570, 597, 762, 791
HpyF10VI	GCNNNNNNNGC	8 cut(s)	90, 93, 96, 99, 237, 321, 594, 788
HpyF3I	CTNAG	3 cut(s)	38, 222, 606
HpySE526I	ACGT	1 cut(s)	494
Hsp92II	CATG	6 cut(s)	130, 346, 562, 594, 659, 801
HspAI	GCGC	2 cut(s)	448, 767
Kpn2I	TCCGGA	1 cut(s)	249
Kzo9I	GATC	1 cut(s)	286
LmnI	GCTCC	2 cut(s)	140, 723
Lsp1109I	GCAGC	4 cut(s)	230, 437, 581, 696
LweI	GCATC	2 cut(s)	417, 579
MaeI	CTAG	1 cut(s)	488
MaeII	ACGT	1 cut(s)	494
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	8 cut(s)	68, 212, 215, 218, 221, 224, 349, 377
MhlI	GDGCHC	1 cut(s)	720
MluCI	AATT	1 cut(s)	530
MmeI	TCCRAC	1 cut(s)	96
MroI	TCCGGA	1 cut(s)	249
MseI	TTAA	1 cut(s)	534
MslI	CAYNNNNRTG	1 cut(s)	796
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	2 cut(s)	195, 250
MspR9I	CCNGG	3 cut(s)	158, 366, 652
MvaI	CCWGG	3 cut(s)	158, 366, 652
MvnI	CGCG	2 cut(s)	294, 767
MwoI	GCNNNNNNNGC	8 cut(s)	90, 93, 96, 99, 237, 321, 594, 788
NcoI	CCATGG	1 cut(s)	558
NdeII	GATC	1 cut(s)	286
NlaIII	CATG	6 cut(s)	130, 346, 562, 594, 659, 801
NlaIV	GGNNCC	2 cut(s)	193, 649
NspI	RCATGY	1 cut(s)	130
PagI	TCATGA	1 cut(s)	797
PasI	CCCWGGG	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	2 cut(s)	279, 291
PfeI	GAWTC	1 cut(s)	668
Ple19I	CGATCG	1 cut(s)	289
Psp124BI	GAGCTC	1 cut(s)	720
Psp6I	CCWGG	3 cut(s)	156, 364, 650
PspGI	CCWGG	3 cut(s)	156, 364, 650
PspN4I	GGNNCC	2 cut(s)	193, 649
PspPI	GGNCC	1 cut(s)	362
PsrI	GAACNNNNNNTAC	2 cut(s)	538, 570
PvuI	CGATCG	1 cut(s)	289
PvuII	CAGCTG	1 cut(s)	221
RsaI	GTAC	3 cut(s)	506, 514, 778
RsaNI	GTAC	3 cut(s)	505, 513, 777
RseI	CAYNNNNRTG	1 cut(s)	796
SacI	GAGCTC	1 cut(s)	720
SaqAI	TTAA	1 cut(s)	534
Sau3AI	GATC	1 cut(s)	286
Sau96I	GGNCC	1 cut(s)	362
ScrFI	CCNGG	3 cut(s)	158, 366, 652
SduI	GDGCHC	1 cut(s)	720
SfaNI	GCATC	2 cut(s)	417, 579
SinI	GGWCC	1 cut(s)	362
SmiMI	CAYNNNNRTG	1 cut(s)	796
Sse9I	AATT	1 cut(s)	530
SspMI	CTAG	1 cut(s)	488
SstI	GAGCTC	1 cut(s)	720
StyD4I	CCNGG	3 cut(s)	156, 364, 650
StyI	CCWWGG	2 cut(s)	558, 688
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	1 cut(s)	497
TaqI	TCGA	3 cut(s)	123, 273, 282
TasI	AATT	1 cut(s)	530
TatI	WGTACW	1 cut(s)	776
TauI	GCSGC	9 cut(s)	87, 90, 93, 96, 99, 102, 173, 243, 294
TfiI	GAWTC	1 cut(s)	668
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TseI	GCWGC	4 cut(s)	218, 450, 594, 684
TspDTI	ATGAA	4 cut(s)	359, 377, 644, 786
TspGWI	ACGGA	2 cut(s)	309, 500
VpaK11BI	GGWCC	1 cut(s)	362
XapI	RAATTY	1 cut(s)	530
XceI	RCATGY	1 cut(s)	130
XspI	CTAG	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.