Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000570.1

Orthogroup ID

OG0008620

Physical Location & Seq

Genomic Coordinates Reverse (-)

142680 .. 144645

Gene Structure 1966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000570.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atgggggatttagagaagcaagcagagagggttgtgctgagcaaggacgaggcggaagaggaggagatggagaggctggtcggcggcggcggcggcggaatggcggtgttggatttcgacatgctctgctccaccgtcgccttacagacccagggcaagtccgccgccaagttccagagctttggtgccggagaagaaggagaagaagcagctgaggttggcgatttcggcggcgtgttccggatgtgggagggtgagcttctcgattggttcgacgatcgccgcgtcgctattcagtcggcttgctgtccgtgctatacatttgggaagaacatgaagcgagctggttttggtcctggctttttacagggaactcttcatttagttcttgttgcgagcatccttctcaactgcattgcgtttattatcaccaagaagcgctgctttatatatctggtggttgctttcaccattacactaggaacgtatttggggtacttccgtacacagataagaaacaaatttaacataaggggtaatgatagttccatggatgattgcatctaccaccttgtctgcccatgctgcacattatctcaggaagccagaacattagagatgaacaatgtccaagatggcacctggcatggcaggggtgattcaatatacataggcagccttggagaaggaggaaagtctttctttgagctccaagcacctcctctcgtgtcaatcaagtcccctgacctctgcaacgcgcaaaaaagtacagcgacttgtgcatattcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

263

Amino Acids

28.77

Weight (kDa)

4.94

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11380
fragaria_vesca	FvH4_3g03670
malus_domestica	MD05G1328900.v1.1 MD10G1305800.v1.1
prunus_persica	Prupe.4G033900_v2.0.a1 Prupe.5G244100_v2.0.a1
pyrus_communis	pycom05g30220 pycom10g25810
rosa_chinensis	RchiOBHm_Chr5g0005711
rosa_laevigata	RLG00000031320
rosa_multiflora	Rmu_co8412991.1_g000001 Rmu_sc0000570.1_g000028 Rmu_sc0000570.1_g000031 Rmu_sc0010248.1_g000003
rosa_roxburghii	Rroxscaffold_1G00070130
rosa_rugosa	Rorug04G0417500 Rorug04G0417500
rosa_samantha	Rh5AG045100 Rh5BG043800 Rh5CG052600 Rh5DG043600
rosa_wichuraiana	Rw0G008380 Rw5G004530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	185, 638
AccII	CGCG	2 cut(s)	285, 758
AccIII	TCCGGA	1 cut(s)	240
AcsI	RAATTY	1 cut(s)	521
AfaI	GTAC	3 cut(s)	497, 505, 769
AfeI	AGCGCT	1 cut(s)	440
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	1 cut(s)	663
AjnI	CCWGG	3 cut(s)	150, 355, 641
AluBI	AGCT	5 cut(s)	180, 212, 259, 344, 709
AluI	AGCT	5 cut(s)	180, 212, 259, 344, 709
Alw21I	GWGCWC	1 cut(s)	711
Aor13HI	TCCGGA	1 cut(s)	240
Aor51HI	AGCGCT	1 cut(s)	440
ApeKI	GCWGC	4 cut(s)	209, 441, 585, 675
ApoI	RAATTY	1 cut(s)	521
AspLEI	GCGC	2 cut(s)	441, 760
AspS9I	GGNCC	1 cut(s)	353
AsuHPI	GGTGA	4 cut(s)	266, 421, 460, 668
AvaII	GGWCC	1 cut(s)	353
BaeI	ACNNNNGTAYC	2 cut(s)	487, 520
BanI	GGYRCC	2 cut(s)	185, 638
BanII	GRGCYC	1 cut(s)	711
BauI	CACGAG	1 cut(s)	725
Bbv12I	GWGCWC	1 cut(s)	711
BbvCI	CCTCAGC	1 cut(s)	213
BbvI	GCAGC	4 cut(s)	221, 428, 572, 687
BccI	CCATC	2 cut(s)	61, 629
BciT130I	CCWGG	3 cut(s)	152, 357, 643
BfaI	CTAG	1 cut(s)	479
BfoI	RGCGCY	1 cut(s)	442
BlpI	GCTNAGC	1 cut(s)	38
Bme1390I	CCNGG	3 cut(s)	152, 357, 643
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	353
BmiI	GGNNCC	2 cut(s)	187, 640
BmrFI	CCNGG	3 cut(s)	152, 357, 643
BmsI	GCATC	2 cut(s)	408, 570
Bpu10I	CCTNAGC	1 cut(s)	213
Bpu1102I	GCTNAGC	1 cut(s)	38
BsaJI	CCNNGG	4 cut(s)	150, 151, 549, 679
BsaWI	WCCGGW	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse3DI	GCAATG	1 cut(s)	414
BseAI	TCCGGA	1 cut(s)	240
BseBI	CCWGG	3 cut(s)	152, 357, 643
BseDI	CCNNGG	4 cut(s)	150, 151, 549, 679
BseGI	GGATG	3 cut(s)	249, 399, 559
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	3 cut(s)	29, 204, 611
BseRI	GAGGAG	3 cut(s)	74, 77, 711
BseXI	GCAGC	4 cut(s)	221, 428, 572, 687
BsgI	GTGCAG	1 cut(s)	571
Bsh1236I	CGCG	2 cut(s)	285, 758
Bsh1285I	CGRYCG	1 cut(s)	280
BshNI	GGYRCC	2 cut(s)	185, 638
BsiEI	CGRYCG	1 cut(s)	280
BsiHKAI	GWGCWC	1 cut(s)	711
BsiSI	CCGG	2 cut(s)	189, 241
BslFI	GGGAC	1 cut(s)	724
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmFI	GGGAC	1 cut(s)	724
Bsp1286I	GDGCHC	1 cut(s)	711
Bsp13I	TCCGGA	1 cut(s)	240
Bsp143I	GATC	1 cut(s)	277
Bsp1720I	GCTNAGC	1 cut(s)	38
Bsp19I	CCATGG	1 cut(s)	549
BspCNI	CTCAG	3 cut(s)	30, 205, 610
BspEI	TCCGGA	1 cut(s)	240
BspFNI	CGCG	2 cut(s)	285, 758
BspHI	TCATGA	1 cut(s)	788
BspLI	GGNNCC	2 cut(s)	187, 640
BspT107I	GGYRCC	2 cut(s)	185, 638
BsrDI	GCAATG	1 cut(s)	414
BssECI	CCNNGG	4 cut(s)	150, 151, 549, 679
BssMI	GATC	1 cut(s)	277
BssSI	CACGAG	1 cut(s)	725
BssT1I	CCWWGG	2 cut(s)	549, 679
Bst2BI	CACGAG	1 cut(s)	725
Bst2UI	CCWGG	3 cut(s)	152, 357, 643
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	2 cut(s)	51, 381
BstC8I	GCNNGC	4 cut(s)	21, 304, 342, 397
BstDEI	CTNAG	3 cut(s)	38, 213, 597
BstDSI	CCRYGG	1 cut(s)	549
BstF5I	GGATG	3 cut(s)	249, 399, 559
BstFNI	CGCG	2 cut(s)	285, 758
BstH2I	RGCGCY	1 cut(s)	442
BstHHI	GCGC	2 cut(s)	441, 760
BstKTI	GATC	1 cut(s)	280
BstMBI	GATC	1 cut(s)	277
BstMCI	CGRYCG	1 cut(s)	280
BstMWI	GCNNNNNNNGC	6 cut(s)	90, 93, 228, 312, 585, 779
BstNI	CCWGG	3 cut(s)	152, 357, 643
BstNSI	RCATGY	1 cut(s)	124
BstSCI	CCNGG	3 cut(s)	150, 355, 641
BstUI	CGCG	2 cut(s)	285, 758
BstV1I	GCAGC	4 cut(s)	221, 428, 572, 687
BstXI	CCANNNNNNTGG	1 cut(s)	182
BtgI	CCRYGG	1 cut(s)	549
BtsCI	GGATG	3 cut(s)	249, 399, 559
Cac8I	GCNNGC	4 cut(s)	21, 304, 342, 397
CciI	TCATGA	1 cut(s)	788
CfoI	GCGC	2 cut(s)	441, 760
Cfr13I	GGNCC	1 cut(s)	353
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	3 cut(s)	496, 504, 768
CviAII	CATG	6 cut(s)	121, 334, 550, 582, 647, 789
CviQI	GTAC	3 cut(s)	496, 504, 768
DdeI	CTNAG	3 cut(s)	38, 213, 597
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
Eam1104I	CTCTTC	2 cut(s)	51, 381
EarI	CTCTTC	2 cut(s)	51, 381
EciI	GGCGGA	3 cut(s)	68, 111, 151
Ecl136II	GAGCTC	1 cut(s)	709
Eco130I	CCWWGG	2 cut(s)	549, 679
Eco24I	GRGCYC	1 cut(s)	711
Eco47I	GGWCC	1 cut(s)	353
Eco47III	AGCGCT	1 cut(s)	440
Eco53kI	GAGCTC	1 cut(s)	709
EcoICRI	GAGCTC	1 cut(s)	709
EcoRII	CCWGG	3 cut(s)	150, 355, 641
EcoT14I	CCWWGG	2 cut(s)	549, 679
EcoT38I	GRGCYC	1 cut(s)	711
ErhI	CCWWGG	2 cut(s)	549, 679
FaeI	CATG	6 cut(s)	124, 337, 553, 585, 650, 792
FalI	AAGNNNNNCTT	4 cut(s)	428, 460, 686, 718
FaqI	GGGAC	1 cut(s)	724
FatI	CATG	6 cut(s)	120, 333, 549, 581, 646, 788
FokI	GGATG	3 cut(s)	256, 386, 566
FriOI	GRGCYC	1 cut(s)	711
FspBI	CTAG	1 cut(s)	479
GlaI	GCGC	2 cut(s)	440, 759
HaeII	RGCGCY	1 cut(s)	442
HapII	CCGG	2 cut(s)	189, 241
HgaI	GACGC	1 cut(s)	274
HhaI	GCGC	2 cut(s)	441, 760
Hin1II	CATG	6 cut(s)	124, 337, 553, 585, 650, 792
Hin6I	GCGC	2 cut(s)	439, 758
HinP1I	GCGC	2 cut(s)	439, 758
HinfI	GANTC	1 cut(s)	659
HpaII	CCGG	2 cut(s)	189, 241
HphI	GGTGA	4 cut(s)	266, 421, 460, 668
Hpy166II	GTNNAC	1 cut(s)	506
Hpy188III	TCNNGA	5 cut(s)	175, 241, 263, 599, 789
Hpy8I	GTNNAC	1 cut(s)	506
Hpy99I	CGWCG	3 cut(s)	140, 278, 290
HpyAV	CCTTC	3 cut(s)	191, 413, 680
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	485
HpyCH4V	TGCA	5 cut(s)	414, 561, 588, 753, 782
HpyF10VI	GCNNNNNNNGC	6 cut(s)	90, 93, 228, 312, 585, 779
HpyF3I	CTNAG	3 cut(s)	38, 213, 597
HpySE526I	ACGT	1 cut(s)	485
Hsp92II	CATG	6 cut(s)	124, 337, 553, 585, 650, 792
HspAI	GCGC	2 cut(s)	439, 758
Kpn2I	TCCGGA	1 cut(s)	240
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	2 cut(s)	134, 714
Lsp1109I	GCAGC	4 cut(s)	221, 428, 572, 687
LweI	GCATC	2 cut(s)	408, 570
MaeI	CTAG	1 cut(s)	479
MaeII	ACGT	1 cut(s)	485
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	5 cut(s)	68, 206, 215, 340, 368
MhlI	GDGCHC	1 cut(s)	711
MluCI	AATT	1 cut(s)	521
MmeI	TCCRAC	1 cut(s)	90
MroI	TCCGGA	1 cut(s)	240
MseI	TTAA	1 cut(s)	525
MslI	CAYNNNNRTG	1 cut(s)	787
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	2 cut(s)	189, 241
MspR9I	CCNGG	3 cut(s)	152, 357, 643
MvaI	CCWGG	3 cut(s)	152, 357, 643
MvnI	CGCG	2 cut(s)	285, 758
MwoI	GCNNNNNNNGC	6 cut(s)	90, 93, 228, 312, 585, 779
NcoI	CCATGG	1 cut(s)	549
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	6 cut(s)	124, 337, 553, 585, 650, 792
NlaIV	GGNNCC	2 cut(s)	187, 640
NspI	RCATGY	1 cut(s)	124
PagI	TCATGA	1 cut(s)	788
PasI	CCCWGGG	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	2 cut(s)	270, 282
PfeI	GAWTC	1 cut(s)	659
Ple19I	CGATCG	1 cut(s)	280
Psp124BI	GAGCTC	1 cut(s)	711
Psp6I	CCWGG	3 cut(s)	150, 355, 641
PspGI	CCWGG	3 cut(s)	150, 355, 641
PspN4I	GGNNCC	2 cut(s)	187, 640
PspPI	GGNCC	1 cut(s)	353
PsrI	GAACNNNNNNTAC	2 cut(s)	529, 561
PvuI	CGATCG	1 cut(s)	280
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	3 cut(s)	497, 505, 769
RsaNI	GTAC	3 cut(s)	496, 504, 768
RseI	CAYNNNNRTG	1 cut(s)	787
SacI	GAGCTC	1 cut(s)	711
SaqAI	TTAA	1 cut(s)	525
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	1 cut(s)	353
ScrFI	CCNGG	3 cut(s)	152, 357, 643
SduI	GDGCHC	1 cut(s)	711
SfaNI	GCATC	2 cut(s)	408, 570
SinI	GGWCC	1 cut(s)	353
SmiMI	CAYNNNNRTG	1 cut(s)	787
Sse9I	AATT	1 cut(s)	521
SspMI	CTAG	1 cut(s)	479
SstI	GAGCTC	1 cut(s)	711
StyD4I	CCNGG	3 cut(s)	150, 355, 641
StyI	CCWWGG	2 cut(s)	549, 679
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	1 cut(s)	488
TaqI	TCGA	3 cut(s)	117, 264, 273
TasI	AATT	1 cut(s)	521
TatI	WGTACW	1 cut(s)	767
TauI	GCSGC	7 cut(s)	87, 90, 93, 96, 167, 234, 285
TfiI	GAWTC	1 cut(s)	659
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TseI	GCWGC	4 cut(s)	209, 441, 585, 675
TspDTI	ATGAA	4 cut(s)	350, 368, 635, 777
TspGWI	ACGGA	2 cut(s)	300, 491
VpaK11BI	GGWCC	1 cut(s)	353
XapI	RAATTY	1 cut(s)	521
XceI	RCATGY	1 cut(s)	124
XspI	CTAG	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.