Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001513

Physical Location & Seq

Genomic Coordinates Reverse (-)

4013121 .. 4014688

Gene Structure 1568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G11900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGATGAAGTGGTCGATCGTTAAGAGAATCCCCGTCTATGGAGGTTCCTTCATTTCTATGAAACATATGATGTTAGTTCCAGCTGATTTGAGCTGGAGCTGCTCGTTCTCTGGTATGCACTCTTTGATAAACACTGGAGAAGAAGACGAGGAAGAACTCTTGAAGAAGATCGTTAACCATAGTGAAAGTGGTTCAAAGATCATCAGCAAAATCGATTATACGAATCTTGTTGAGAAGTTTACAAGAGATGGAAATCTCTCTGGAGCATATGACTTGTTACAGTCTTTACAAGAAAAGAACATATGTTTGCCTATTTCGGTTTTCAAGAACCTTCTTGCAGCGGCGGGTGAGCTGAACGATATGAAGCTTTCTTGTAGAGTCTTCAGAGAGGTCTTGATCTTGCCGGGTAAGGAACCATTGAGTTCAGATTGTTATCTCAACCTTGCTAGAGCATTCATTAACACGGATGATTGCACGTATTTGACGAGTCTGCTTAAAGAGATATCAGAGTCTTCACTTCCGTATAGGTTAATAGTAATGAACAGAATCATCTTTGCATTTGCTGAAACTAGACAGATCGATAAGGTTCTTATGATACTTAAGGAGATGAAAGAGTGGGAATGTAAACCAGATGTGATCACATATAACTCGGTTTTGGATATCTTGGGACGAGCTGGCCTTGTGAATGAGATTCTGGGGGTTTTGTCAACGATGAAGGAAGATTGTAGTGTATCTGTAAACATCATTACTTACAACACGGTGTTAAACGGGATGAGGAAAGCTTGTAGATTCGATATGTGTTTGGTGATATACAATGAAATGGTTCAATGTGGAATTGAACCAGATTTGCTAAGTTATACAGCGGTGATAGACAGTTTGGGTCGATCTGGGAACGTTAAGGAATCGTTGAGGCTTTTCGATGAGATGAAGCAGAGACAGATTCGACCATCGGTTTATGTCTACCGAGCTTTAATCGATTGTCTGAAGAAGTCAGGAGATTTTCAGAGTGCATTGCAGCTTTCAGATGAGTTGAAGAACACTTCCTCATTAGATTTGGCTGGTCCACAAGATTTTAAGAGACATTTGAGGTCACATAGACGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

367

Amino Acids

41.62

Weight (kDa)

6.55

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	164 - 223	7.4e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	178 - 222	5.9e-10	PPR repeat family
PPR_2	PF13041	247 - 294	1.6e-11	PPR repeat family
PPR_3	PF13812	270 - 327	5e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	278 - 310	3.5e-08	PPR repeat
PPR_2	PF13041	281 - 329	1.1e-11	PPR repeat family
PPR	PF01535	285 - 313	4.7e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11900
fragaria_vesca	FvH4_6g24020 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44670 FvH4_6g44670 FvH4_6g44670
malus_domestica	MD14G1065400.v1.1 MD17G1084400.v1.1
prunus_persica	Prupe.3G231200_v2.0.a1
pyrus_communis	pycom17g08150
rosa_chinensis	RchiOBHm_Chr1g0342741 RchiOBHm_Chr1g0342831 RchiOBHm_Chr2g0161831
rosa_laevigata	RLG00000021301 RLG00000029118 RLG00000029172 RLG00000029191
rosa_multiflora	Rmu_co8023038.1_g000001 Rmu_sc0001993.1_g000024 Rmu_sc0004502.1_g000002 Rmu_sc0011563.1_g000011
rosa_roxburghii	Rroxscaffold_2G00088520 Rroxscaffold_2G00088540 Rroxscaffold_2G00118030 Rroxscaffold_3G00231880 Rroxscaffold_4G00313190 Rroxscaffold_4G00313220 Rroxscaffold_7G00197130
rosa_rugosa	Rorug01G0146200.1 Rorug02G0492600
rosa_samantha	Rh1AG162400 Rh1AG162900 Rh1AG163800 Rh1AG164600 Rh1BG129700 Rh1CG152900 Rh1CG153400 Rh2AG558200 Rh2AG558300 Rh2CG541900 Rh2CG542300 Rh2DG581000 Rh2DG581900 Rh3CG249700
rosa_wichuraiana	Rw1G013300 Rw1G013340 Rw1G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	960
AciI	CCGC	3 cut(s)	341, 344, 863
AclI	AACGTT	1 cut(s)	894
AcuI	CTGAAG	2 cut(s)	367, 1004
AfiI	CCNNNNNNNGG	1 cut(s)	38
AflII	CTTAAG	1 cut(s)	599
AgsI	TTSAA	6 cut(s)	163, 195, 325, 827, 839, 1033
AluBI	AGCT	9 cut(s)	83, 93, 99, 352, 367, 674, 782, 968, 1018
AluI	AGCT	9 cut(s)	83, 93, 99, 352, 367, 674, 782, 968, 1018
Alw26I	GTCTC	2 cut(s)	928, 1072
AoxI	GGCC	1 cut(s)	676
ApeKI	GCWGC	3 cut(s)	99, 338, 1015
Asp700I	GAANNNNTTC	1 cut(s)	822
AspS9I	GGNCC	1 cut(s)	1061
AsuC2I	CCSGG	1 cut(s)	405
AsuHPI	GGTGA	3 cut(s)	359, 817, 877
AvaII	GGWCC	1 cut(s)	1061
BbsI	GAAGAC	3 cut(s)	150, 373, 504
BbvI	GCAGC	3 cut(s)	86, 350, 1027
BccI	CCATC	2 cut(s)	242, 955
BclI	TGATCA	1 cut(s)	636
BcnI	CCSGG	1 cut(s)	405
BcoDI	GTCTC	2 cut(s)	928, 1072
BfaI	CTAG	2 cut(s)	447, 570
BfrI	CTTAAG	1 cut(s)	599
BisI	GCNGC	4 cut(s)	100, 339, 342, 1016
BlsI	GCNGC	4 cut(s)	101, 340, 343, 1017
Bme1390I	CCNGG	1 cut(s)	405
Bme18I	GGWCC	1 cut(s)	1061
BmgT120I	GGNCC	1 cut(s)	1061
BmiI	GGNNCC	2 cut(s)	46, 414
BmrFI	CCNGG	1 cut(s)	405
BpiI	GAAGAC	3 cut(s)	150, 373, 504
BpmI	CTGGAG	3 cut(s)	115, 156, 282
BpuMI	CCSGG	1 cut(s)	405
Bsa29I	ATCGAT	3 cut(s)	213, 579, 975
BsaAI	YACGTR	1 cut(s)	477
BsaBI	GATNNNNATC	2 cut(s)	252, 432
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse1I	ACTGG	1 cut(s)	139
Bse3DI	GCAATG	1 cut(s)	1010
Bse8I	GATNNNNATC	2 cut(s)	252, 432
BseCI	ATCGAT	3 cut(s)	213, 579, 975
BseGI	GGATG	2 cut(s)	472, 777
BseJI	GATNNNNATC	2 cut(s)	252, 432
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMI	GCAATG	1 cut(s)	1010
BseNI	ACTGG	1 cut(s)	139
BseXI	GCAGC	3 cut(s)	86, 350, 1027
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	678
BshVI	ATCGAT	3 cut(s)	213, 579, 975
BsiEI	CGRYCG	1 cut(s)	18
BsiSI	CCGG	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	681
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	2 cut(s)	928, 1072
BsmFI	GGGAC	1 cut(s)	681
BsmI	GAATGC	1 cut(s)	452
BsnI	GGCC	1 cut(s)	678
Bsp143I	GATC	7 cut(s)	15, 168, 198, 396, 576, 636, 884
BspACI	CCGC	3 cut(s)	341, 344, 863
BspANI	GGCC	1 cut(s)	678
BspDI	ATCGAT	3 cut(s)	213, 579, 975
BspLI	GGNNCC	2 cut(s)	46, 414
BspTI	CTTAAG	1 cut(s)	599
BsrDI	GCAATG	1 cut(s)	1010
BsrI	ACTGG	1 cut(s)	139
BssMI	GATC	7 cut(s)	15, 168, 198, 396, 576, 636, 884
Bst4CI	ACNGT	3 cut(s)	282, 760, 875
BstAFI	CTTAAG	1 cut(s)	599
BstBAI	YACGTR	1 cut(s)	477
BstC8I	GCNNGC	1 cut(s)	676
BstDEI	CTNAG	1 cut(s)	851
BstF5I	GGATG	2 cut(s)	472, 777
BstKTI	GATC	7 cut(s)	18, 171, 201, 399, 579, 639, 887
BstMAI	GTCTC	2 cut(s)	928, 1072
BstMBI	GATC	7 cut(s)	15, 168, 198, 396, 576, 636, 884
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	403
BstV1I	GCAGC	3 cut(s)	86, 350, 1027
BstV2I	GAAGAC	3 cut(s)	150, 373, 504
Bsu15I	ATCGAT	3 cut(s)	213, 579, 975
BsuRI	GGCC	1 cut(s)	678
BsuTUI	ATCGAT	3 cut(s)	213, 579, 975
BtsCI	GGATG	2 cut(s)	472, 777
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	676
Cfr13I	GGNCC	1 cut(s)	1061
ClaI	ATCGAT	3 cut(s)	213, 579, 975
DdeI	CTNAG	1 cut(s)	851
DpnI	GATC	7 cut(s)	17, 170, 200, 398, 578, 638, 886
DpnII	GATC	7 cut(s)	15, 168, 198, 396, 576, 636, 884
Eco32I	GATATC	2 cut(s)	504, 661
Eco47I	GGWCC	1 cut(s)	1061
Eco57I	CTGAAG	2 cut(s)	367, 1004
EcoRV	GATATC	2 cut(s)	504, 661
FaqI	GGGAC	1 cut(s)	681
FauI	CCCGC	1 cut(s)	337
FauNDI	CATATG	3 cut(s)	66, 268, 302
FbaI	TGATCA	1 cut(s)	636
FblI	GTMKAC	1 cut(s)	960
Fnu4HI	GCNGC	4 cut(s)	100, 339, 342, 1016
FokI	GGATG	2 cut(s)	479, 784
Fsp4HI	GCNGC	4 cut(s)	100, 339, 342, 1016
FspBI	CTAG	2 cut(s)	447, 570
GluI	GCNGC	4 cut(s)	100, 339, 342, 1016
GsuI	CTGGAG	3 cut(s)	115, 156, 282
HaeIII	GGCC	1 cut(s)	678
HapII	CCGG	1 cut(s)	404
HincII	GTYRAC	2 cut(s)	175, 708
HindII	GTYRAC	2 cut(s)	175, 708
HindIII	AAGCTT	2 cut(s)	365, 780
HpaI	GTTAAC	1 cut(s)	175
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	3 cut(s)	359, 817, 877
Hpy166II	GTNNAC	7 cut(s)	175, 240, 626, 708, 739, 961, 1064
Hpy188I	TCNGA	6 cut(s)	386, 427, 508, 984, 1005, 1024
Hpy188III	TCNNGA	5 cut(s)	160, 261, 325, 394, 993
Hpy8I	GTNNAC	7 cut(s)	175, 240, 626, 708, 739, 961, 1064
HpyAV	CCTTC	3 cut(s)	58, 341, 709
HpyCH4III	ACNGT	3 cut(s)	282, 760, 875
HpyCH4IV	ACGT	2 cut(s)	476, 894
HpyCH4V	TGCA	6 cut(s)	118, 338, 474, 557, 1010, 1015
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpyF3I	CTNAG	1 cut(s)	851
HpySE526I	ACGT	2 cut(s)	476, 894
Ksp22I	TGATCA	1 cut(s)	636
KspAI	GTTAAC	1 cut(s)	175
Kzo9I	GATC	7 cut(s)	15, 168, 198, 396, 576, 636, 884
LmnI	GCTCC	2 cut(s)	96, 263
Lsp1109I	GCAGC	3 cut(s)	86, 350, 1027
MaeI	CTAG	2 cut(s)	447, 570
MaeII	ACGT	2 cut(s)	476, 894
MaeIII	GTNAC	2 cut(s)	276, 1089
MalI	GATC	7 cut(s)	17, 170, 200, 398, 578, 638, 886
MboI	GATC	7 cut(s)	15, 168, 198, 396, 576, 636, 884
MluCI	AATT	1 cut(s)	834
MlyI	GAGTC	3 cut(s)	387, 496, 518
MnlI	CCTC	7 cut(s)	35, 142, 382, 768, 903, 1054, 1080
MroXI	GAANNNNTTC	1 cut(s)	822
MslI	CAYNNNNRTG	1 cut(s)	56
MspA1I	CMGCKG	3 cut(s)	83, 341, 863
MspCI	CTTAAG	1 cut(s)	599
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	1 cut(s)	405
Mva1269I	GAATGC	1 cut(s)	452
MwoI	GCNNNNNNNGC	1 cut(s)	99
NciI	CCSGG	1 cut(s)	405
NdeI	CATATG	3 cut(s)	66, 268, 302
NdeII	GATC	7 cut(s)	15, 168, 198, 396, 576, 636, 884
NlaIV	GGNNCC	2 cut(s)	46, 414
NmuCI	GTSAC	1 cut(s)	1089
PcsI	WCGNNNNNNNCGW	1 cut(s)	482
PctI	GAATGC	1 cut(s)	452
PdmI	GAANNNNTTC	1 cut(s)	822
PfeI	GAWTC	7 cut(s)	27, 223, 546, 691, 789, 902, 940
PkrI	GCNGC	4 cut(s)	101, 340, 343, 1017
Ple19I	CGATCG	1 cut(s)	18
PleI	GAGTC	3 cut(s)	386, 495, 517
PpsI	GAGTC	3 cut(s)	386, 495, 517
Ppu21I	YACGTR	1 cut(s)	477
Psp1406I	AACGTT	1 cut(s)	894
PspN4I	GGNNCC	2 cut(s)	46, 414
PspPI	GGNCC	1 cut(s)	1061
PvuI	CGATCG	1 cut(s)	18
PvuII	CAGCTG	1 cut(s)	83
RseI	CAYNNNNRTG	1 cut(s)	56
SatI	GCNGC	4 cut(s)	100, 339, 342, 1016
Sau3AI	GATC	7 cut(s)	15, 168, 198, 396, 576, 636, 884
Sau96I	GGNCC	1 cut(s)	1061
SchI	GAGTC	3 cut(s)	387, 496, 518
ScrFI	CCNGG	1 cut(s)	405
SinI	GGWCC	1 cut(s)	1061
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	599
SmoI	CTYRAG	1 cut(s)	599
Sse9I	AATT	1 cut(s)	834
SsiI	CCGC	3 cut(s)	341, 344, 863
SspMI	CTAG	2 cut(s)	447, 570
StyD4I	CCNGG	1 cut(s)	403
TaaI	ACNGT	3 cut(s)	282, 760, 875
TaiI	ACGT	2 cut(s)	479, 897
TaqI	TCGA	8 cut(s)	14, 213, 579, 792, 883, 918, 943, 975
TasI	AATT	1 cut(s)	834
TauI	GCSGC	1 cut(s)	344
TfiI	GAWTC	7 cut(s)	27, 223, 546, 691, 789, 902, 940
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	1089
TseI	GCWGC	3 cut(s)	99, 338, 1015
Tsp45I	GTSAC	1 cut(s)	1089
TspGWI	ACGGA	2 cut(s)	479, 510
TspRI	CASTG	1 cut(s)	139
Vha464I	CTTAAG	1 cut(s)	599
VpaK11BI	GGWCC	1 cut(s)	1061
XcmI	CCANNNNNNNNNTGG	1 cut(s)	185
XmiI	GTMKAC	1 cut(s)	960
XmnI	GAANNNNTTC	1 cut(s)	822
XspI	CTAG	2 cut(s)	447, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.