Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001513

Physical Location & Seq

Genomic Coordinates Forward (+)

6086406 .. 6087488

Gene Structure 1083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g08150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGAATATCCAGAGCATGCTATCTTCTTCCTCAAGGCACTTGCGATGCTACATAGCAGCAGCCGCAGCATCAGACCTAGGCGCTCTCACTTTCCTCCCCAACTCCGCTCCAATTCGGCGCCCGAATCACAACCCCCCGCCATTCTCCACCTCAGTCGATCCGCCATTGTTTTCCACCGCAACCAGATTCATTAGCAGCTCTCGGACCTCTTCTTCCCTAGAGCAAGAGGCTACCCTGAATCAAATTCTTTCCTCAATACAAAACGCCGCCACATTACTCGAATCCTTGTACGAAAACCGCCTTTTCCTCAGCCCCAAATCGTTCAAGCGCGTGCTGGTTGCGGCCGCCGCCGAAAGCAACGACCTTTCCCTCCTATCTCAGCTTCTTCAGGTCGCAATCGCGTCTTCTCAACCTTTAAATTCTGCTTGTTTTCTCACTGTCGCCAAAGCTTTCGCAAAGTCGGATGATTGCGCGGAGCTGCTCAGATTAACCAAGCAGGTAATGGAGCTCACCTCTCCCAGCATGACAGTCATAAACAGGATTCTCTTTGCTTTCGGCGAATGCGGAGAGACTGAGAAGGCGCTCCTGATCTTTTCCCAGATGAAAACTCTTGATTTCGTGCCTGATTTGTACACCCACAACACTGTTTTAGAGATTTTAGGATATGCCGGTAGGATTGATGAAATGCTGGGTCAGTTGGGGGTTATGAAAGAGACCGGCATTGTCCCGGATGTGGTTTCTTACAATACGGTGTTGAACAATTTGAGGAAGCTTGGGAAATTCGATGTGTGTATGTTTTACTTCAAGGAAATGGGTGAAAATGGTGTGGAGGTAGATTTGCTTACTTATACTGCAGTGATTGAGAGCTTGGGAAGATCAGGAAATGTTGAGGAGGCATTGAGATTCTTCGACGAGATGAAGGCGAGGCACATTCGTCCTTCCCTGTATGTTTATCGGTCACTGATCACGAACCTGAAGAAGATGGGGAAGGTGGACTTGGCATTGAGTTTAACAGAGGAGATGAATTCGTGTGATTCGGAGCTTGCTGGTCCAATGGATTTCAAACGTAATAAACGGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

361

Amino Acids

39.81

Weight (kDa)

6.16

Isoelectric Point (pI)

52.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	197 - 253	1.3e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	243 - 290	2.3e-09	PPR repeat family
PPR_3	PF13812	268 - 323	5.6e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	274 - 307	8.7e-09	PPR repeat
PPR_2	PF13041	281 - 325	1e-10	PPR repeat family
PPR	PF01535	282 - 309	2.2e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11900
fragaria_vesca	FvH4_6g24020 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44670 FvH4_6g44670 FvH4_6g44670
malus_domestica	MD14G1065400.v1.1 MD17G1084400.v1.1
prunus_persica	Prupe.3G231200_v2.0.a1
pyrus_communis	pycom17g08150
rosa_chinensis	RchiOBHm_Chr1g0342741 RchiOBHm_Chr1g0342831 RchiOBHm_Chr2g0161831
rosa_laevigata	RLG00000021301 RLG00000029118 RLG00000029172 RLG00000029191
rosa_multiflora	Rmu_co8023038.1_g000001 Rmu_sc0001993.1_g000024 Rmu_sc0004502.1_g000002 Rmu_sc0011563.1_g000011
rosa_roxburghii	Rroxscaffold_2G00088520 Rroxscaffold_2G00088540 Rroxscaffold_2G00118030 Rroxscaffold_3G00231880 Rroxscaffold_4G00313190 Rroxscaffold_4G00313220 Rroxscaffold_7G00197130
rosa_rugosa	Rorug01G0146200.1 Rorug02G0492600
rosa_samantha	Rh1AG162400 Rh1AG162900 Rh1AG163800 Rh1AG164600 Rh1BG129700 Rh1CG152900 Rh1CG153400 Rh2AG558200 Rh2AG558300 Rh2CG541900 Rh2CG542300 Rh2DG581000 Rh2DG581900 Rh3CG249700
rosa_wichuraiana	Rw1G013300 Rw1G013340 Rw1G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	487
AccB1I	GGYRCC	1 cut(s)	117
AccBSI	CCGCTC	1 cut(s)	107
AccII	CGCG	3 cut(s)	330, 401, 473
AclWI	GGATC	1 cut(s)	152
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	4 cut(s)	243, 418, 779, 1024
AcuI	CTGAAG	2 cut(s)	371, 995
AcyI	GRCGYC	1 cut(s)	118
AfaI	GTAC	2 cut(s)	290, 632
AfiI	CCNNNNNNNGG	1 cut(s)	733
AgsI	TTSAA	4 cut(s)	325, 757, 805, 1063
AjuI	GAANNNNNNNTTGG	2 cut(s)	980, 1012
AluBI	AGCT	8 cut(s)	198, 382, 449, 478, 508, 772, 867, 1042
AluI	AGCT	8 cut(s)	198, 382, 449, 478, 508, 772, 867, 1042
Alw21I	GWGCWC	1 cut(s)	510
Alw26I	GTCTC	2 cut(s)	563, 707
AlwI	GGATC	1 cut(s)	152
AoxI	GGCC	1 cut(s)	342
ApeKI	GCWGC	5 cut(s)	56, 59, 65, 195, 478
ApoI	RAATTY	4 cut(s)	243, 418, 779, 1024
AspA2I	CCTAGG	1 cut(s)	76
AspLEI	GCGC	5 cut(s)	83, 120, 330, 473, 583
AspS9I	GGNCC	2 cut(s)	204, 1049
AsuC2I	CCSGG	1 cut(s)	728
AsuHPI	GGTGA	2 cut(s)	502, 827
AvaII	GGWCC	2 cut(s)	204, 1049
AvrII	CCTAGG	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	117
BanII	GRGCYC	1 cut(s)	510
BbsI	GAAGAC	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	510
BbvCI	CCTCAGC	1 cut(s)	308
BbvI	GCAGC	5 cut(s)	68, 71, 77, 207, 465
BccI	CCATC	1 cut(s)	976
BclI	TGATCA	1 cut(s)	963
BcnI	CCSGG	1 cut(s)	728
BcoDI	GTCTC	2 cut(s)	563, 707
BfaI	CTAG	2 cut(s)	77, 218
BfmI	CTRYAG	1 cut(s)	852
BfoI	RGCGCY	3 cut(s)	84, 121, 584
BfuAI	ACCTGC	1 cut(s)	487
BlnI	CCTAGG	1 cut(s)	76
Bme1390I	CCNGG	1 cut(s)	728
Bme18I	GGWCC	2 cut(s)	204, 1049
BmgT120I	GGNCC	2 cut(s)	204, 1049
BmiI	GGNNCC	1 cut(s)	119
BmrFI	CCNGG	1 cut(s)	728
BmsI	GCATC	2 cut(s)	35, 77
BpiI	GAAGAC	1 cut(s)	396
BplI	GAGNNNNNCTC	2 cut(s)	497, 529
Bpu10I	CCTNAGC	1 cut(s)	308
BpuEI	CTTGAG	1 cut(s)	16
BpuMI	CCSGG	1 cut(s)	728
BsaHI	GRCGYC	1 cut(s)	118
BsaI	GGTCTC	1 cut(s)	707
BsaJI	CCNNGG	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	1 cut(s)	733
Bse118I	RCCGGY	2 cut(s)	668, 716
BseDI	CCNNGG	1 cut(s)	76
BseGI	GGATG	2 cut(s)	469, 736
BseLI	CCNNNNNNNGG	1 cut(s)	733
BseMII	CTCAG	5 cut(s)	165, 322, 392, 496, 564
BseRI	GAGGAG	2 cut(s)	905, 1031
BseX3I	CGGCCG	1 cut(s)	342
BseXI	GCAGC	5 cut(s)	68, 71, 77, 207, 465
BseYI	CCCAGC	2 cut(s)	518, 688
Bsh1236I	CGCG	3 cut(s)	330, 401, 473
Bsh1285I	CGRYCG	1 cut(s)	345
BshFI	GGCC	1 cut(s)	344
BshNI	GGYRCC	1 cut(s)	117
BsiEI	CGRYCG	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	510
BsiSI	CCGG	3 cut(s)	669, 717, 728
BslFI	GGGAC	1 cut(s)	710
BslI	CCNNNNNNNGG	1 cut(s)	733
BsmAI	GTCTC	2 cut(s)	563, 707
BsmFI	GGGAC	1 cut(s)	710
BsmI	GAATGC	1 cut(s)	566
BsnI	GGCC	1 cut(s)	344
Bso31I	GGTCTC	1 cut(s)	707
Bsp1286I	GDGCHC	1 cut(s)	510
Bsp1407I	TGTACA	1 cut(s)	630
Bsp143I	GATC	4 cut(s)	157, 588, 875, 963
BspANI	GGCC	1 cut(s)	344
BspCNI	CTCAG	5 cut(s)	164, 321, 391, 495, 565
BspFNI	CGCG	3 cut(s)	330, 401, 473
BspLI	GGNNCC	1 cut(s)	119
BspMAI	CTGCAG	1 cut(s)	856
BspMI	ACCTGC	1 cut(s)	487
BspPI	GGATC	1 cut(s)	152
BspT107I	GGYRCC	1 cut(s)	117
BspTNI	GGTCTC	1 cut(s)	707
BsrBI	CCGCTC	1 cut(s)	107
BsrFI	RCCGGY	2 cut(s)	668, 716
BsrGI	TGTACA	1 cut(s)	630
BssAI	RCCGGY	2 cut(s)	668, 716
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	4 cut(s)	157, 588, 875, 963
BssNI	GRCGYC	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	76
Bst4CI	ACNGT	5 cut(s)	439, 529, 646, 751, 1077
Bst6I	CTCTTC	1 cut(s)	214
BstACI	GRCGYC	1 cut(s)	118
BstAUI	TGTACA	1 cut(s)	630
BstC8I	GCNNGC	3 cut(s)	17, 332, 1044
BstDEI	CTNAG	5 cut(s)	151, 308, 378, 482, 573
BstF5I	GGATG	2 cut(s)	469, 736
BstFNI	CGCG	3 cut(s)	330, 401, 473
BstH2I	RGCGCY	3 cut(s)	84, 121, 584
BstHHI	GCGC	5 cut(s)	83, 120, 330, 473, 583
BstKTI	GATC	4 cut(s)	160, 591, 878, 966
BstMAI	GTCTC	2 cut(s)	563, 707
BstMBI	GATC	4 cut(s)	157, 588, 875, 963
BstMCI	CGRYCG	1 cut(s)	345
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 65, 347
BstNSI	RCATGY	1 cut(s)	19
BstSCI	CCNGG	1 cut(s)	726
BstSFI	CTRYAG	1 cut(s)	852
BstUI	CGCG	3 cut(s)	330, 401, 473
BstV1I	GCAGC	5 cut(s)	68, 71, 77, 207, 465
BstV2I	GAAGAC	1 cut(s)	396
BstZI	CGGCCG	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	344
BtgZI	GCGATG	1 cut(s)	58
BtsCI	GGATG	2 cut(s)	469, 736
BtsI	GCAGTG	1 cut(s)	861
BtsIMutI	CAGTG	4 cut(s)	435, 642, 861, 959
BveI	ACCTGC	1 cut(s)	487
Cac8I	GCNNGC	3 cut(s)	17, 332, 1044
CciNI	GCGGCCGC	1 cut(s)	342
CfoI	GCGC	5 cut(s)	83, 120, 330, 473, 583
Cfr10I	RCCGGY	2 cut(s)	668, 716
Cfr13I	GGNCC	2 cut(s)	204, 1049
CseI	GACGC	1 cut(s)	390
Csp6I	GTAC	2 cut(s)	289, 631
CviAII	CATG	2 cut(s)	16, 523
CviQI	GTAC	2 cut(s)	289, 631
DdeI	CTNAG	5 cut(s)	151, 308, 378, 482, 573
DinI	GGCGCC	1 cut(s)	119
DpnI	GATC	4 cut(s)	159, 590, 877, 965
DpnII	GATC	4 cut(s)	157, 588, 875, 963
DraI	TTTAAA	1 cut(s)	417
EaeI	YGGCCR	1 cut(s)	342
EagI	CGGCCG	1 cut(s)	342
Eam1104I	CTCTTC	1 cut(s)	214
EarI	CTCTTC	1 cut(s)	214
EciI	GGCGGA	1 cut(s)	150
Ecl136II	GAGCTC	1 cut(s)	508
EclXI	CGGCCG	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	510
Eco31I	GGTCTC	1 cut(s)	707
Eco47I	GGWCC	2 cut(s)	204, 1049
Eco52I	CGGCCG	1 cut(s)	342
Eco53kI	GAGCTC	1 cut(s)	508
Eco57I	CTGAAG	2 cut(s)	371, 995
EcoICRI	GAGCTC	1 cut(s)	508
EcoRI	GAATTC	1 cut(s)	1024
EcoT14I	CCWWGG	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	510
EgeI	GGCGCC	1 cut(s)	119
EheI	GGCGCC	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	2 cut(s)	19, 526
FaiI	YATR	9 cut(s)	17, 53, 524, 533, 666, 707, 794, 849, 948
FalI	AAGNNNNNCTT	2 cut(s)	980, 1012
FaqI	GGGAC	1 cut(s)	710
FatI	CATG	2 cut(s)	15, 522
FauI	CCCGC	1 cut(s)	144
FbaI	TGATCA	1 cut(s)	963
FokI	GGATG	2 cut(s)	476, 743
FriOI	GRGCYC	1 cut(s)	510
FspBI	CTAG	2 cut(s)	77, 218
GlaI	GCGC	5 cut(s)	82, 119, 329, 472, 582
GsaI	CCCAGC	2 cut(s)	522, 692
HaeII	RGCGCY	3 cut(s)	84, 121, 584
HaeIII	GGCC	1 cut(s)	344
HapII	CCGG	3 cut(s)	669, 717, 728
HgaI	GACGC	1 cut(s)	390
HhaI	GCGC	5 cut(s)	83, 120, 330, 473, 583
Hin1I	GRCGYC	1 cut(s)	118
Hin1II	CATG	2 cut(s)	19, 526
Hin6I	GCGC	5 cut(s)	81, 118, 328, 471, 581
HinP1I	GCGC	5 cut(s)	81, 118, 328, 471, 581
HindIII	AAGCTT	2 cut(s)	447, 770
HinfI	GANTC	7 cut(s)	124, 186, 238, 281, 541, 903, 1034
HpaII	CCGG	3 cut(s)	669, 717, 728
HphI	GGTGA	2 cut(s)	502, 827
Hpy166II	GTNNAC	2 cut(s)	633, 994
Hpy188I	TCNGA	5 cut(s)	73, 204, 463, 485, 1039
Hpy188III	TCNNGA	5 cut(s)	10, 586, 611, 879, 967
Hpy8I	GTNNAC	2 cut(s)	633, 994
Hpy99I	CGWCG	1 cut(s)	914
HpyAV	CCTTC	4 cut(s)	571, 913, 948, 982
HpyCH4III	ACNGT	5 cut(s)	439, 529, 646, 751, 1077
HpyCH4IV	ACGT	1 cut(s)	1066
HpyCH4V	TGCA	1 cut(s)	854
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 65, 347
HpyF3I	CTNAG	5 cut(s)	151, 308, 378, 482, 573
HpySE526I	ACGT	1 cut(s)	1066
Hsp92I	GRCGYC	1 cut(s)	118
Hsp92II	CATG	2 cut(s)	19, 526
HspAI	GCGC	5 cut(s)	81, 118, 328, 471, 581
KasI	GGCGCC	1 cut(s)	117
Ksp22I	TGATCA	1 cut(s)	963
Kzo9I	GATC	4 cut(s)	157, 588, 875, 963
LmnI	GCTCC	5 cut(s)	112, 475, 505, 588, 1039
Lsp1109I	GCAGC	5 cut(s)	68, 71, 77, 207, 465
LweI	GCATC	2 cut(s)	35, 77
MaeI	CTAG	2 cut(s)	77, 218
MaeII	ACGT	1 cut(s)	1066
MaeIII	GTNAC	1 cut(s)	957
MalI	GATC	4 cut(s)	159, 590, 877, 965
MbiI	CCGCTC	1 cut(s)	107
MboI	GATC	4 cut(s)	157, 588, 875, 963
MhlI	GDGCHC	1 cut(s)	510
MluCI	AATT	6 cut(s)	111, 243, 418, 760, 779, 1024
Mly113I	GGCGCC	1 cut(s)	118
MmeI	TCCRAC	1 cut(s)	441
MseI	TTAA	3 cut(s)	416, 488, 1010
MspI	CCGG	3 cut(s)	669, 717, 728
MspR9I	CCNGG	1 cut(s)	728
Mva1269I	GAATGC	1 cut(s)	566
MvnI	CGCG	3 cut(s)	330, 401, 473
MwoI	GCNNNNNNNGC	3 cut(s)	62, 65, 347
NarI	GGCGCC	1 cut(s)	118
NciI	CCSGG	1 cut(s)	728
NdeII	GATC	4 cut(s)	157, 588, 875, 963
NlaIII	CATG	2 cut(s)	19, 526
NlaIV	GGNNCC	1 cut(s)	119
NmuCI	GTSAC	1 cut(s)	957
NotI	GCGGCCGC	1 cut(s)	342
NspI	RCATGY	1 cut(s)	19
PaeI	GCATGC	1 cut(s)	19
PctI	GAATGC	1 cut(s)	566
PfeI	GAWTC	7 cut(s)	124, 186, 238, 281, 541, 903, 1034
PfoI	TCCNGGA	1 cut(s)	726
PluTI	GGCGCC	1 cut(s)	121
Psp124BI	GAGCTC	1 cut(s)	510
PspFI	CCCAGC	2 cut(s)	518, 688
PspN4I	GGNNCC	1 cut(s)	119
PspPI	GGNCC	2 cut(s)	204, 1049
PstI	CTGCAG	1 cut(s)	856
RsaI	GTAC	2 cut(s)	290, 632
RsaNI	GTAC	2 cut(s)	289, 631
SacI	GAGCTC	1 cut(s)	510
SaqAI	TTAA	3 cut(s)	416, 488, 1010
Sau3AI	GATC	4 cut(s)	157, 588, 875, 963
Sau96I	GGNCC	2 cut(s)	204, 1049
ScrFI	CCNGG	1 cut(s)	728
SduI	GDGCHC	1 cut(s)	510
SfaNI	GCATC	2 cut(s)	35, 77
SfcI	CTRYAG	1 cut(s)	852
SfoI	GGCGCC	1 cut(s)	119
SinI	GGWCC	2 cut(s)	204, 1049
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
SphI	GCATGC	1 cut(s)	19
Sse9I	AATT	6 cut(s)	111, 243, 418, 760, 779, 1024
SspDI	GGCGCC	1 cut(s)	117
SspMI	CTAG	2 cut(s)	77, 218
SstI	GAGCTC	1 cut(s)	510
StyD4I	CCNGG	1 cut(s)	726
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	5 cut(s)	439, 529, 646, 751, 1077
TaiI	ACGT	1 cut(s)	1069
TaqI	TCGA	4 cut(s)	156, 279, 783, 909
TaqII	GACCGA	1 cut(s)	945
TasI	AATT	6 cut(s)	111, 243, 418, 760, 779, 1024
TatI	WGTACW	1 cut(s)	630
TauI	GCSGC	5 cut(s)	65, 269, 344, 347, 350
TfiI	GAWTC	7 cut(s)	124, 186, 238, 281, 541, 903, 1034
Tru1I	TTAA	3 cut(s)	416, 488, 1010
Tru9I	TTAA	3 cut(s)	416, 488, 1010
TscAI	CASTG	4 cut(s)	442, 649, 861, 966
TseFI	GTSAC	1 cut(s)	957
TseI	GCWGC	5 cut(s)	56, 59, 65, 195, 478
Tsp45I	GTSAC	1 cut(s)	957
TspDTI	ATGAA	7 cut(s)	17, 178, 617, 696, 722, 932, 1037
TspRI	CASTG	4 cut(s)	442, 649, 861, 966
VpaK11BI	GGWCC	2 cut(s)	204, 1049
XapI	RAATTY	4 cut(s)	243, 418, 779, 1024
XceI	RCATGY	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
XmaJI	CCTAGG	1 cut(s)	76
XspI	CTAG	2 cut(s)	77, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.