Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001513

Physical Location & Seq

Genomic Coordinates Reverse (-)

22847440 .. 22849173

Gene Structure 1734 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G231200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGCTATCTGCTTCTTCAAGGCGTTTGCGATGCTACATAGCAGCAGCATCAGACCTATGCGCTAGCAATTTCGGCCCCAACTCGGCTCCAAATCGGTACCCGATTCACAAGCGTATGCCATTATCCACCCCACTTGATAAGCCATTGTTTTCCACTATAAGTAGCTTCATCAGCAACTCTCGGGCCTCTTCTTTCTCAGAAGAAGACGCTATAGTGAATCAAATTCTTTCCGATTTAGAAAACGCCGCTCCATTACTCGAATCGTCATACAAAAAACGCGTCTTCCTGAGCTCCAAAGCGTTTAATCGTGTGCTGGTTGCAGCAGCCAGCGAAAGGAACGATCTTTCCCTTGTATCCCAACTTGTTCACGTTGCAGTCGCGTCTCGTCGTCAACCCTTGAACTCGACTTGTTTTCTCACTGTCGCCAAGGCTTTTGCAAAGTCAGATGATTGTGGGGAGTTGCTCAGACTAACAAAGCAAGTCATGGAGATTACCTCTCCCAATATGACCATCATTAACAGGGTTCTCTTTGCCTTTGGTGAATGTGGAGAGATTGATAAAGCGCTTCTGATCTTTGCCCAGATGAAAGCTTTGAATTTTGTACCAGATTTGTACACCCACAACACCATTTTGGAGATCTTGGGTTGTGCAGGTCGCATTGATGACATGCTGGGTCAGTTTGGGTCCATGAAAGAAGCTGGTATTGACCCAGATGTGGTTTCTTACAATGCTGTGTTGAACAATTTGAGGAAGCTTGGGAAATTCGATATTTGCTTGTTCTATTTCGGGGAAATGGGTGAAAATGGAGTTCAGCCAGATTTGCTGACTTATACAGCAATGATTGAGAGCCTGGGCCGATCAGGAAATGTTGATGAGTCACTGAGACTCTTCAGTGAGATGAAGGTGAGGCGGATTCGTCCTTCGGTGTATGTTTACCGGTCACTGATCAGTAACCTGAAGAAGATGGGGAAGGTGGACTTGGCATTGAAGTTGATGGAGGAGATGAATTCATGTGATACAGAGTTTGCTGGTCCTACGGATTTCAAACGAAATAAACGCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

355

Amino Acids

39.34

Weight (kDa)

8.69

Isoelectric Point (pI)

44.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11900
fragaria_vesca	FvH4_6g24020 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44670 FvH4_6g44670 FvH4_6g44670
malus_domestica	MD14G1065400.v1.1 MD17G1084400.v1.1
prunus_persica	Prupe.3G231200_v2.0.a1
pyrus_communis	pycom17g08150
rosa_chinensis	RchiOBHm_Chr1g0342741 RchiOBHm_Chr1g0342831 RchiOBHm_Chr2g0161831
rosa_laevigata	RLG00000021301 RLG00000029118 RLG00000029172 RLG00000029191
rosa_multiflora	Rmu_co8023038.1_g000001 Rmu_sc0001993.1_g000024 Rmu_sc0004502.1_g000002 Rmu_sc0011563.1_g000011
rosa_roxburghii	Rroxscaffold_2G00088520 Rroxscaffold_2G00088540 Rroxscaffold_2G00118030 Rroxscaffold_3G00231880 Rroxscaffold_4G00313190 Rroxscaffold_4G00313220 Rroxscaffold_7G00197130
rosa_rugosa	Rorug01G0146200.1 Rorug02G0492600
rosa_samantha	Rh1AG162400 Rh1AG162900 Rh1AG163800 Rh1AG164600 Rh1BG129700 Rh1CG152900 Rh1CG153400 Rh2AG558200 Rh2AG558300 Rh2CG541900 Rh2CG542300 Rh2DG581000 Rh2DG581900 Rh3CG249700
rosa_wichuraiana	Rw1G013300 Rw1G013340 Rw1G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1063
Acc36I	ACCTGC	1 cut(s)	641
Acc65I	GGTACC	1 cut(s)	96
AccB1I	GGYRCC	1 cut(s)	96
AccBSI	CCGCTC	1 cut(s)	248
AccII	CGCG	2 cut(s)	279, 380
AciI	CCGC	2 cut(s)	246, 910
AcsI	RAATTY	4 cut(s)	222, 595, 761, 1006
AcuI	CTGAAG	2 cut(s)	874, 977
AfaI	GTAC	3 cut(s)	98, 603, 614
AfeI	AGCGCT	1 cut(s)	564
AfiI	CCNNNNNNNGG	3 cut(s)	82, 333, 715
AflIII	ACRYGT	1 cut(s)	277
AgeI	ACCGGT	1 cut(s)	936
AgsI	TTSAA	6 cut(s)	18, 400, 595, 739, 988, 1045
AjnI	CCWGG	1 cut(s)	849
AjuI	GAANNNNNNNTTGG	2 cut(s)	962, 994
AloI	GAACNNNNNNTCC	2 cut(s)	329, 361
AluBI	AGCT	5 cut(s)	165, 291, 590, 698, 754
AluI	AGCT	5 cut(s)	165, 291, 590, 698, 754
Alw21I	GWGCWC	1 cut(s)	293
Alw26I	GTCTC	2 cut(s)	387, 877
Ama87I	CYCGRG	1 cut(s)	180
Aor51HI	AGCGCT	1 cut(s)	564
AoxI	GGCC	3 cut(s)	73, 183, 853
ApeKI	GCWGC	4 cut(s)	41, 44, 320, 323
ApoI	RAATTY	4 cut(s)	222, 595, 761, 1006
ArsI	GACNNNNNNTTYG	2 cut(s)	264, 296
AsiGI	ACCGGT	1 cut(s)	936
Asp718I	GGTACC	1 cut(s)	96
AspLEI	GCGC	2 cut(s)	62, 565
AspS9I	GGNCC	5 cut(s)	74, 183, 684, 853, 1031
AsuHPI	GGTGA	3 cut(s)	551, 809, 916
AsuNHI	GCTAGC	1 cut(s)	62
AvaI	CYCGRG	1 cut(s)	180
AvaII	GGWCC	2 cut(s)	684, 1031
BanI	GGYRCC	1 cut(s)	96
BanII	GRGCYC	1 cut(s)	293
BbsI	GAAGAC	2 cut(s)	210, 274
Bbv12I	GWGCWC	1 cut(s)	293
BbvI	GCAGC	4 cut(s)	53, 56, 332, 335
BccI	CCATC	3 cut(s)	518, 958, 988
BciT130I	CCWGG	1 cut(s)	851
BciVI	GTATCC	1 cut(s)	364
BclI	TGATCA	1 cut(s)	945
BcoDI	GTCTC	2 cut(s)	387, 877
BfaI	CTAG	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	210
BfoI	RGCGCY	1 cut(s)	566
BfuAI	ACCTGC	1 cut(s)	641
BfuI	GTATCC	1 cut(s)	364
BglII	AGATCT	1 cut(s)	636
BisI	GCNGC	5 cut(s)	42, 45, 246, 321, 324
BlsI	GCNGC	5 cut(s)	43, 46, 247, 322, 325
Bme1390I	CCNGG	1 cut(s)	851
Bme18I	GGWCC	2 cut(s)	684, 1031
BmeT110I	CYCGRG	1 cut(s)	180
BmgT120I	GGNCC	5 cut(s)	74, 183, 684, 853, 1031
BmiI	GGNNCC	4 cut(s)	76, 87, 98, 685
BmrFI	CCNGG	1 cut(s)	851
BmsI	GCATC	2 cut(s)	20, 56
BmtI	GCTAGC	1 cut(s)	66
BpiI	GAAGAC	2 cut(s)	210, 274
BplI	GAGNNNNNCTC	2 cut(s)	479, 511
Bpu10I	CCTNAGC	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	426, 850
BsaWI	WCCGGW	1 cut(s)	936
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 333, 715
Bse118I	RCCGGY	1 cut(s)	936
Bse3DI	GCAATG	1 cut(s)	843
BseBI	CCWGG	1 cut(s)	851
BseDI	CCNNGG	2 cut(s)	426, 850
BseLI	CCNNNNNNNGG	3 cut(s)	82, 333, 715
BseMI	GCAATG	1 cut(s)	843
BseMII	CTCAG	4 cut(s)	210, 278, 478, 872
BseRI	GAGGAG	1 cut(s)	1013
BseXI	GCAGC	4 cut(s)	53, 56, 332, 335
BseYI	CCCAGC	1 cut(s)	670
BsgI	GTGCAG	1 cut(s)	669
Bsh1236I	CGCG	2 cut(s)	279, 380
BshFI	GGCC	3 cut(s)	75, 185, 855
BshNI	GGYRCC	1 cut(s)	96
BshTI	ACCGGT	1 cut(s)	936
BsiHKAI	GWGCWC	1 cut(s)	293
BsiHKCI	CYCGRG	1 cut(s)	180
BsiSI	CCGG	1 cut(s)	937
BslI	CCNNNNNNNGG	3 cut(s)	82, 333, 715
BsmAI	GTCTC	2 cut(s)	387, 877
BsmBI	CGTCTC	1 cut(s)	387
BsnI	GGCC	3 cut(s)	75, 185, 855
BsoBI	CYCGRG	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp1407I	TGTACA	1 cut(s)	612
Bsp143I	GATC	5 cut(s)	340, 570, 636, 857, 945
BspACI	CCGC	2 cut(s)	246, 910
BspANI	GGCC	3 cut(s)	75, 185, 855
BspCNI	CTCAG	4 cut(s)	209, 279, 477, 873
BspFNI	CGCG	2 cut(s)	279, 380
BspLI	GGNNCC	4 cut(s)	76, 87, 98, 685
BspMI	ACCTGC	1 cut(s)	641
BspOI	GCTAGC	1 cut(s)	66
BspT107I	GGYRCC	1 cut(s)	96
BsrBI	CCGCTC	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	843
BsrFI	RCCGGY	1 cut(s)	936
BsrGI	TGTACA	1 cut(s)	612
BssAI	RCCGGY	1 cut(s)	936
BssECI	CCNNGG	2 cut(s)	426, 850
BssMI	GATC	5 cut(s)	340, 570, 636, 857, 945
BssT1I	CCWWGG	1 cut(s)	426
Bst2UI	CCWGG	1 cut(s)	851
Bst4CI	ACNGT	1 cut(s)	421
Bst6I	CTCTTC	2 cut(s)	193, 893
BstAUI	TGTACA	1 cut(s)	612
BstC8I	GCNNGC	2 cut(s)	64, 328
BstDEI	CTNAG	4 cut(s)	196, 287, 464, 881
BstFNI	CGCG	2 cut(s)	279, 380
BstH2I	RGCGCY	1 cut(s)	566
BstHHI	GCGC	2 cut(s)	62, 565
BstKTI	GATC	5 cut(s)	343, 573, 639, 860, 948
BstMAI	GTCTC	2 cut(s)	387, 877
BstMBI	GATC	5 cut(s)	340, 570, 636, 857, 945
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 171, 820
BstNI	CCWGG	1 cut(s)	851
BstNSI	RCATGY	1 cut(s)	670
BstSCI	CCNGG	1 cut(s)	849
BstSFI	CTRYAG	1 cut(s)	210
BstUI	CGCG	2 cut(s)	279, 380
BstV1I	GCAGC	4 cut(s)	53, 56, 332, 335
BstV2I	GAAGAC	2 cut(s)	210, 274
BstX2I	RGATCY	1 cut(s)	636
BstYI	RGATCY	1 cut(s)	636
BsuI	GTATCC	1 cut(s)	364
BsuRI	GGCC	3 cut(s)	75, 185, 855
BtgZI	GCGATG	1 cut(s)	43
BtsIMutI	CAGTG	4 cut(s)	417, 878, 898, 941
BveI	ACCTGC	1 cut(s)	641
Cac8I	GCNNGC	2 cut(s)	64, 328
CfoI	GCGC	2 cut(s)	62, 565
Cfr10I	RCCGGY	1 cut(s)	936
Cfr13I	GGNCC	5 cut(s)	74, 183, 684, 853, 1031
CseI	GACGC	3 cut(s)	215, 268, 369
Csp6I	GTAC	3 cut(s)	97, 602, 613
CspAI	ACCGGT	1 cut(s)	936
CspCI	CAANNNNNGTGG	2 cut(s)	115, 150
CviAII	CATG	4 cut(s)	484, 667, 688, 1011
CviQI	GTAC	3 cut(s)	97, 602, 613
DdeI	CTNAG	4 cut(s)	196, 287, 464, 881
DpnI	GATC	5 cut(s)	342, 572, 638, 859, 947
DpnII	GATC	5 cut(s)	340, 570, 636, 857, 945
Eam1104I	CTCTTC	2 cut(s)	193, 893
EarI	CTCTTC	2 cut(s)	193, 893
EciI	GGCGGA	1 cut(s)	925
Ecl136II	GAGCTC	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	426
Eco24I	GRGCYC	1 cut(s)	293
Eco47I	GGWCC	2 cut(s)	684, 1031
Eco47III	AGCGCT	1 cut(s)	564
Eco53kI	GAGCTC	1 cut(s)	291
Eco57I	CTGAAG	2 cut(s)	874, 977
Eco88I	CYCGRG	1 cut(s)	180
EcoICRI	GAGCTC	1 cut(s)	291
EcoRI	GAATTC	1 cut(s)	1006
EcoRII	CCWGG	1 cut(s)	849
EcoT14I	CCWWGG	1 cut(s)	426
EcoT38I	GRGCYC	1 cut(s)	293
ErhI	CCWWGG	1 cut(s)	426
Esp3I	CGTCTC	1 cut(s)	387
FaeI	CATG	4 cut(s)	487, 670, 691, 1014
FalI	AAGNNNNNCTT	2 cut(s)	962, 994
FatI	CATG	4 cut(s)	483, 666, 687, 1010
FbaI	TGATCA	1 cut(s)	945
Fnu4HI	GCNGC	5 cut(s)	42, 45, 246, 321, 324
FriOI	GRGCYC	1 cut(s)	293
Fsp4HI	GCNGC	5 cut(s)	42, 45, 246, 321, 324
FspBI	CTAG	1 cut(s)	63
GlaI	GCGC	2 cut(s)	61, 564
GluI	GCNGC	5 cut(s)	42, 45, 246, 321, 324
GsaI	CCCAGC	1 cut(s)	674
HaeII	RGCGCY	1 cut(s)	566
HaeIII	GGCC	3 cut(s)	75, 185, 855
HapII	CCGG	1 cut(s)	937
HgaI	GACGC	3 cut(s)	215, 268, 369
HhaI	GCGC	2 cut(s)	62, 565
Hin1II	CATG	4 cut(s)	487, 670, 691, 1014
Hin6I	GCGC	2 cut(s)	60, 563
HinP1I	GCGC	2 cut(s)	60, 563
HincII	GTYRAC	1 cut(s)	392
HindII	GTYRAC	1 cut(s)	392
HindIII	AAGCTT	2 cut(s)	588, 752
HinfI	GANTC	6 cut(s)	103, 217, 260, 875, 885, 913
HpaII	CCGG	1 cut(s)	937
HphI	GGTGA	3 cut(s)	551, 809, 916
Hpy166II	GTNNAC	5 cut(s)	367, 392, 615, 934, 976
Hpy188I	TCNGA	6 cut(s)	52, 199, 232, 445, 467, 570
Hpy188III	TCNNGA	2 cut(s)	286, 861
Hpy8I	GTNNAC	5 cut(s)	367, 392, 615, 934, 976
Hpy99I	CGWCG	1 cut(s)	390
HpyAV	CCTTC	3 cut(s)	895, 930, 964
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	4 cut(s)	320, 374, 437, 650
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 171, 820
HpyF3I	CTNAG	4 cut(s)	196, 287, 464, 881
HpySE526I	ACGT	1 cut(s)	369
Hsp92II	CATG	4 cut(s)	487, 670, 691, 1014
HspAI	GCGC	2 cut(s)	60, 563
KpnI	GGTACC	1 cut(s)	100
Ksp22I	TGATCA	1 cut(s)	945
Kzo9I	GATC	5 cut(s)	340, 570, 636, 857, 945
LmnI	GCTCC	3 cut(s)	91, 253, 296
Lsp1109I	GCAGC	4 cut(s)	53, 56, 332, 335
LweI	GCATC	2 cut(s)	20, 56
MaeI	CTAG	1 cut(s)	63
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	3 cut(s)	876, 939, 950
MalI	GATC	5 cut(s)	342, 572, 638, 859, 947
MbiI	CCGCTC	1 cut(s)	248
MboI	GATC	5 cut(s)	340, 570, 636, 857, 945
MboII	GAAGA	8 cut(s)	6, 180, 212, 215, 274, 880, 970, 973
MflI	RGATCY	1 cut(s)	636
MhlI	GDGCHC	1 cut(s)	293
MluCI	AATT	6 cut(s)	67, 222, 595, 742, 761, 1006
MluI	ACGCGT	1 cut(s)	277
MlyI	GAGTC	2 cut(s)	879, 884
MnlI	CCTC	5 cut(s)	196, 505, 741, 900, 991
MseI	TTAA	2 cut(s)	303, 516
MspI	CCGG	1 cut(s)	937
MspR9I	CCNGG	1 cut(s)	851
MvaI	CCWGG	1 cut(s)	851
MvnI	CGCG	2 cut(s)	279, 380
MwoI	GCNNNNNNNGC	3 cut(s)	72, 171, 820
NdeII	GATC	5 cut(s)	340, 570, 636, 857, 945
NheI	GCTAGC	1 cut(s)	62
NlaIII	CATG	4 cut(s)	487, 670, 691, 1014
NlaIV	GGNNCC	4 cut(s)	76, 87, 98, 685
NmeAIII	GCCGAG	1 cut(s)	62
NmuCI	GTSAC	2 cut(s)	876, 939
NspI	RCATGY	1 cut(s)	670
PfeI	GAWTC	4 cut(s)	103, 217, 260, 913
PinAI	ACCGGT	1 cut(s)	936
PkrI	GCNGC	5 cut(s)	43, 46, 247, 322, 325
PleI	GAGTC	2 cut(s)	879, 883
PpsI	GAGTC	2 cut(s)	879, 883
PsiI	TTATAA	1 cut(s)	1063
Psp124BI	GAGCTC	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	849
PspFI	CCCAGC	1 cut(s)	670
PspGI	CCWGG	1 cut(s)	849
PspN4I	GGNNCC	4 cut(s)	76, 87, 98, 685
PspPI	GGNCC	5 cut(s)	74, 183, 684, 853, 1031
PsuI	RGATCY	1 cut(s)	636
RsaI	GTAC	3 cut(s)	98, 603, 614
RsaNI	GTAC	3 cut(s)	97, 602, 613
SacI	GAGCTC	1 cut(s)	293
SaqAI	TTAA	2 cut(s)	303, 516
SatI	GCNGC	5 cut(s)	42, 45, 246, 321, 324
Sau3AI	GATC	5 cut(s)	340, 570, 636, 857, 945
Sau96I	GGNCC	5 cut(s)	74, 183, 684, 853, 1031
SchI	GAGTC	2 cut(s)	879, 884
ScrFI	CCNGG	1 cut(s)	851
SduI	GDGCHC	1 cut(s)	293
SfaNI	GCATC	2 cut(s)	20, 56
SfcI	CTRYAG	1 cut(s)	210
SinI	GGWCC	2 cut(s)	684, 1031
Sse9I	AATT	6 cut(s)	67, 222, 595, 742, 761, 1006
SsiI	CCGC	2 cut(s)	246, 910
SspMI	CTAG	1 cut(s)	63
SstI	GAGCTC	1 cut(s)	293
StyD4I	CCNGG	1 cut(s)	849
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	1 cut(s)	421
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	3 cut(s)	258, 404, 765
TasI	AATT	6 cut(s)	67, 222, 595, 742, 761, 1006
TatI	WGTACW	1 cut(s)	612
TauI	GCSGC	1 cut(s)	248
TfiI	GAWTC	4 cut(s)	103, 217, 260, 913
Tru1I	TTAA	2 cut(s)	303, 516
Tru9I	TTAA	2 cut(s)	303, 516
TscAI	CASTG	4 cut(s)	424, 885, 898, 948
TseFI	GTSAC	2 cut(s)	876, 939
TseI	GCWGC	4 cut(s)	41, 44, 320, 323
Tsp45I	GTSAC	2 cut(s)	876, 939
TspDTI	ATGAA	6 cut(s)	157, 599, 704, 914, 999, 1019
TspGWI	ACGGA	1 cut(s)	1052
TspRI	CASTG	4 cut(s)	424, 885, 898, 948
VpaK11BI	GGWCC	2 cut(s)	684, 1031
XapI	RAATTY	4 cut(s)	222, 595, 761, 1006
XceI	RCATGY	1 cut(s)	670
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.