Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001513

Physical Location & Seq

Genomic Coordinates Reverse (-)

18043303 .. 18044346

Gene Structure 1044 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g24020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGCTATCCGCTTCCTCAAGGCATTTCCGATCCCACAGAGTAGCAGGGTTACTCATTCCCGCTTTCTCTCCCGACCCATTTCCCATTCGGATCCATAAATCTCCACCACTCCCAAACCCGAACACCTTCCCATCCTTCACCACCGCAACAACATCCACCCACAACACTCACCCCTCTTCCCAATCACAACAACAAACACTACTCACTCAAATTCTCTCCTCCAGCGAAAACGCCCCCACATTACTTCAATCCTTACACAACCAACACATATCCCTAAACCCAAACTCTTTCAACCTTGTTCTAATCTCCGCCGCCCAAACAAACCATCTTCACCTCCTAACCCACATCTTCAAACTCGCTGTTGCTTCCAAAACACAACCCTTAAACTCAAACTGCTATCTCACTGTCGCCAAAGCCTTTGCAAAAGCAGATGACTCTGTTCTGGAGCTTCTCAGATTCACCGACCAAGTATTGGAACTGACTCGACCGAGCATGACAGTTATAAACAGACTCCTCTTTGCATTTGGTCAACTCAAAGAGACTGATACTGCAGCTTTGATCTTTGCCCATGTCAAAGATAGAAGCTTTTCGCCGGATTTGTACACATACAACACTGTTTTGGAGATATTGGGCCGGGCGGGTCGGACAGGTGAGATGCTGAGGCTGTTTGGGGAGATGAAGGAAGCTGGGATTGACCCGGATTTGGTTTCTTACAATACAGTGATAAACCATGTGAGGAAGTTTGGGGAGGTTGAAATGTGCTTGTTTTATTTCAAGGAAATGTGTGAAATGGGTGTGCAGCCTGATTTGCTGAGTTATACTGCGGTCATTGATGGGTTGGGGAGGTCAGGGAATATTGAGGAGTCGTTGAGGTTGTTTGATCAGATGAAGAAGAGGCGGATTCGGCCTTCGTTATATCTGTGTAGGGCAGTGATCAGTAATTTGAAGAAGATGGGGAAGGTGGAGATGGCAGTGAGTTTGATGGAGGAGATGAATTCATGTGCTTCAGGTGTTTCTAATCCGAGATGGAAGAAACGTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

348

Amino Acids

38.94

Weight (kDa)

9.36

Isoelectric Point (pI)

51.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	183 - 332	2.9e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	187 - 244	3.5e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	198 - 244	8.5e-12	PPR repeat family
PPR	PF01535	201 - 231	3.1e-06	PPR repeat
PPR_2	PF13041	233 - 281	8.1e-11	PPR repeat family
PPR_3	PF13812	258 - 306	4.6e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	264 - 297	3.3e-08	PPR repeat
PPR_2	PF13041	268 - 306	2.6e-08	PPR repeat family
PPR	PF01535	272 - 301	1.3e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11900
fragaria_vesca	FvH4_6g24020 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44670 FvH4_6g44670 FvH4_6g44670
malus_domestica	MD14G1065400.v1.1 MD17G1084400.v1.1
prunus_persica	Prupe.3G231200_v2.0.a1
pyrus_communis	pycom17g08150
rosa_chinensis	RchiOBHm_Chr1g0342741 RchiOBHm_Chr1g0342831 RchiOBHm_Chr2g0161831
rosa_laevigata	RLG00000021301 RLG00000029118 RLG00000029172 RLG00000029191
rosa_multiflora	Rmu_co8023038.1_g000001 Rmu_sc0001993.1_g000024 Rmu_sc0004502.1_g000002 Rmu_sc0011563.1_g000011
rosa_roxburghii	Rroxscaffold_2G00088520 Rroxscaffold_2G00088540 Rroxscaffold_2G00118030 Rroxscaffold_3G00231880 Rroxscaffold_4G00313190 Rroxscaffold_4G00313220 Rroxscaffold_7G00197130
rosa_rugosa	Rorug01G0146200.1 Rorug02G0492600
rosa_samantha	Rh1AG162400 Rh1AG162900 Rh1AG163800 Rh1AG164600 Rh1BG129700 Rh1CG152900 Rh1CG153400 Rh2AG558200 Rh2AG558300 Rh2CG541900 Rh2CG542300 Rh2DG581000 Rh2DG581900 Rh3CG249700
rosa_wichuraiana	Rw1G013300 Rw1G013340 Rw1G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	503
AccB7I	CCANNNNNTGG	1 cut(s)	472
AciI	CCGC	8 cut(s)	9, 60, 144, 309, 312, 638, 824, 898
AclWI	GGATC	3 cut(s)	24, 85, 98
AcsI	RAATTY	2 cut(s)	210, 994
AcuI	CTGAAG	1 cut(s)	990
AfaI	GTAC	1 cut(s)	602
AfiI	CCNNNNNNNGG	2 cut(s)	472, 703
AgsI	TTSAA	6 cut(s)	248, 292, 352, 755, 775, 946
AluBI	AGCT	4 cut(s)	448, 554, 585, 686
AluI	AGCT	4 cut(s)	448, 554, 585, 686
Alw26I	GTCTC	1 cut(s)	533
AlwI	GGATC	3 cut(s)	24, 85, 98
AoxI	GGCC	2 cut(s)	631, 905
ApeKI	GCWGC	2 cut(s)	551, 799
ApoI	RAATTY	2 cut(s)	210, 994
Asp700I	GAANNNNTTC	2 cut(s)	125, 586
AspS9I	GGNCC	1 cut(s)	631
AsuC2I	CCSGG	2 cut(s)	635, 698
AsuHPI	GGTGA	5 cut(s)	130, 161, 323, 451, 662
BamHI	GGATCC	1 cut(s)	90
BbvCI	CCTCAGC	1 cut(s)	659
BbvI	GCAGC	2 cut(s)	563, 811
BccI	CCATC	7 cut(s)	139, 333, 827, 946, 961, 976, 1020
BclI	TGATCA	2 cut(s)	880, 933
BcnI	CCSGG	2 cut(s)	635, 698
BcoDI	GTCTC	1 cut(s)	533
BfmI	CTRYAG	1 cut(s)	549
BisI	GCNGC	3 cut(s)	312, 552, 800
BlsI	GCNGC	3 cut(s)	313, 553, 801
Bme1390I	CCNGG	2 cut(s)	635, 698
BmgT120I	GGNCC	1 cut(s)	631
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	2 cut(s)	635, 698
BmsI	GCATC	1 cut(s)	645
BpmI	CTGGAG	2 cut(s)	205, 464
Bpu10I	CCTNAGC	1 cut(s)	659
BpuMI	CCSGG	2 cut(s)	635, 698
Bsc4I	CCNNNNNNNGG	2 cut(s)	472, 703
BseGI	GGATG	2 cut(s)	131, 152
BseLI	CCNNNNNNNGG	2 cut(s)	472, 703
BseMII	CTCAG	3 cut(s)	466, 650, 803
BseRI	GAGGAG	4 cut(s)	208, 503, 875, 1001
BseXI	GCAGC	2 cut(s)	563, 811
BseYI	CCCAGC	1 cut(s)	686
BsgI	GTGCAG	1 cut(s)	818
Bsh1285I	CGRYCG	1 cut(s)	488
BshFI	GGCC	2 cut(s)	633, 907
BsiEI	CGRYCG	1 cut(s)	488
BsiSI	CCGG	3 cut(s)	593, 634, 698
BslI	CCNNNNNNNGG	2 cut(s)	472, 703
BsmAI	GTCTC	1 cut(s)	533
BsnI	GGCC	2 cut(s)	633, 907
Bsp1407I	TGTACA	1 cut(s)	600
Bsp143I	GATC	5 cut(s)	29, 90, 558, 880, 933
BspACI	CCGC	8 cut(s)	9, 60, 144, 309, 312, 638, 824, 898
BspANI	GGCC	2 cut(s)	633, 907
BspCNI	CTCAG	3 cut(s)	465, 651, 804
BspLI	GGNNCC	1 cut(s)	92
BspMAI	CTGCAG	1 cut(s)	553
BspPI	GGATC	3 cut(s)	24, 85, 98
BsrGI	TGTACA	1 cut(s)	600
BssMI	GATC	5 cut(s)	29, 90, 558, 880, 933
Bst4CI	ACNGT	4 cut(s)	406, 499, 616, 721
Bst6I	CTCTTC	2 cut(s)	181, 887
BstAUI	TGTACA	1 cut(s)	600
BstDEI	CTNAG	3 cut(s)	452, 659, 812
BstF5I	GGATG	2 cut(s)	131, 152
BstKTI	GATC	5 cut(s)	32, 93, 561, 883, 936
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	5 cut(s)	29, 90, 558, 880, 933
BstMCI	CGRYCG	1 cut(s)	488
BstMWI	GCNNNNNNNGC	2 cut(s)	808, 904
BstSCI	CCNGG	2 cut(s)	633, 696
BstSFI	CTRYAG	1 cut(s)	549
BstV1I	GCAGC	2 cut(s)	563, 811
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
BsuRI	GGCC	2 cut(s)	633, 907
BtsCI	GGATG	2 cut(s)	131, 152
BtsI	GCAGTG	2 cut(s)	936, 978
BtsIMutI	CAGTG	5 cut(s)	402, 612, 726, 936, 978
Cfr13I	GGNCC	1 cut(s)	631
Csp6I	GTAC	1 cut(s)	601
CviAII	CATG	4 cut(s)	493, 569, 731, 999
CviJI	RGCY	9 cut(s)	416, 448, 554, 585, 633, 664, 686, 802, 907
CviKI_1	RGCY	9 cut(s)	416, 448, 554, 585, 633, 664, 686, 802, 907
CviQI	GTAC	1 cut(s)	601
DdeI	CTNAG	3 cut(s)	452, 659, 812
DpnI	GATC	5 cut(s)	31, 92, 560, 882, 935
DpnII	GATC	5 cut(s)	29, 90, 558, 880, 933
Eam1104I	CTCTTC	2 cut(s)	181, 887
EarI	CTCTTC	2 cut(s)	181, 887
EciI	GGCGGA	2 cut(s)	298, 913
Eco57I	CTGAAG	1 cut(s)	990
EcoRI	GAATTC	1 cut(s)	994
FaeI	CATG	4 cut(s)	496, 572, 734, 1002
FatI	CATG	4 cut(s)	492, 568, 730, 998
FauI	CCCGC	2 cut(s)	67, 631
FbaI	TGATCA	2 cut(s)	880, 933
Fnu4HI	GCNGC	3 cut(s)	312, 552, 800
FokI	GGATG	2 cut(s)	118, 139
Fsp4HI	GCNGC	3 cut(s)	312, 552, 800
GluI	GCNGC	3 cut(s)	312, 552, 800
GsaI	CCCAGC	1 cut(s)	690
GsuI	CTGGAG	2 cut(s)	205, 464
HaeIII	GGCC	2 cut(s)	633, 907
HapII	CCGG	3 cut(s)	593, 634, 698
Hin1II	CATG	4 cut(s)	496, 572, 734, 1002
HincII	GTYRAC	1 cut(s)	530
HindII	GTYRAC	1 cut(s)	530
HindIII	AAGCTT	1 cut(s)	583
HinfI	GANTC	6 cut(s)	434, 456, 481, 510, 863, 901
HpaII	CCGG	3 cut(s)	593, 634, 698
HphI	GGTGA	5 cut(s)	130, 161, 323, 451, 662
Hpy166II	GTNNAC	2 cut(s)	530, 603
Hpy188I	TCNGA	6 cut(s)	29, 90, 455, 645, 885, 1023
Hpy188III	TCNNGA	2 cut(s)	71, 443
Hpy8I	GTNNAC	2 cut(s)	530, 603
Hpy99I	CGWCG	1 cut(s)	1041
HpyAV	CCTTC	5 cut(s)	136, 145, 673, 918, 952
HpyCH4III	ACNGT	4 cut(s)	406, 499, 616, 721
HpyCH4IV	ACGT	1 cut(s)	1036
HpyCH4V	TGCA	4 cut(s)	422, 521, 551, 799
HpyF10VI	GCNNNNNNNGC	2 cut(s)	808, 904
HpyF3I	CTNAG	3 cut(s)	452, 659, 812
HpySE526I	ACGT	1 cut(s)	1036
Hsp92II	CATG	4 cut(s)	496, 572, 734, 1002
Ksp22I	TGATCA	2 cut(s)	880, 933
Kzo9I	GATC	5 cut(s)	29, 90, 558, 880, 933
LmnI	GCTCC	1 cut(s)	445
Lsp1109I	GCAGC	2 cut(s)	563, 811
LweI	GCATC	1 cut(s)	645
MaeII	ACGT	1 cut(s)	1036
MaeIII	GTNAC	1 cut(s)	48
MalI	GATC	5 cut(s)	31, 92, 560, 882, 935
MboI	GATC	5 cut(s)	29, 90, 558, 880, 933
MboII	GAAGA	8 cut(s)	168, 320, 340, 901, 904, 958, 961, 1042
MflI	RGATCY	1 cut(s)	90
MluCI	AATT	3 cut(s)	210, 940, 994
MlyI	GAGTC	4 cut(s)	428, 475, 504, 872
MmeI	TCCRAC	1 cut(s)	623
MroXI	GAANNNNTTC	2 cut(s)	125, 586
MseI	TTAA	1 cut(s)	383
MspI	CCGG	3 cut(s)	593, 634, 698
MspR9I	CCNGG	2 cut(s)	635, 698
MwoI	GCNNNNNNNGC	2 cut(s)	808, 904
NciI	CCSGG	2 cut(s)	635, 698
NdeII	GATC	5 cut(s)	29, 90, 558, 880, 933
NlaIII	CATG	4 cut(s)	496, 572, 734, 1002
NlaIV	GGNNCC	1 cut(s)	92
PdmI	GAANNNNTTC	2 cut(s)	125, 586
PfeI	GAWTC	2 cut(s)	456, 901
PflMI	CCANNNNNTGG	1 cut(s)	472
PkrI	GCNGC	3 cut(s)	313, 553, 801
PleI	GAGTC	4 cut(s)	428, 475, 504, 871
PpsI	GAGTC	4 cut(s)	428, 475, 504, 871
PsiI	TTATAA	1 cut(s)	503
PspFI	CCCAGC	1 cut(s)	686
PspN4I	GGNNCC	1 cut(s)	92
PspPI	GGNCC	1 cut(s)	631
PstI	CTGCAG	1 cut(s)	553
PsuI	RGATCY	1 cut(s)	90
RsaI	GTAC	1 cut(s)	602
RsaNI	GTAC	1 cut(s)	601
SaqAI	TTAA	1 cut(s)	383
SatI	GCNGC	3 cut(s)	312, 552, 800
Sau3AI	GATC	5 cut(s)	29, 90, 558, 880, 933
Sau96I	GGNCC	1 cut(s)	631
SchI	GAGTC	4 cut(s)	428, 475, 504, 872
ScrFI	CCNGG	2 cut(s)	635, 698
SfaNI	GCATC	1 cut(s)	645
SfcI	CTRYAG	1 cut(s)	549
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	3 cut(s)	210, 940, 994
SsiI	CCGC	8 cut(s)	9, 60, 144, 309, 312, 638, 824, 898
SspI	AATATT	1 cut(s)	856
StyD4I	CCNGG	2 cut(s)	633, 696
TaaI	ACNGT	4 cut(s)	406, 499, 616, 721
TaiI	ACGT	1 cut(s)	1039
TaqI	TCGA	1 cut(s)	484
TaqII	GACCGA	1 cut(s)	502
TasI	AATT	3 cut(s)	210, 940, 994
TatI	WGTACW	1 cut(s)	600
TauI	GCSGC	1 cut(s)	314
TfiI	GAWTC	2 cut(s)	456, 901
Tru1I	TTAA	1 cut(s)	383
Tru9I	TTAA	1 cut(s)	383
TscAI	CASTG	5 cut(s)	409, 619, 726, 936, 978
TseI	GCWGC	2 cut(s)	551, 799
TspDTI	ATGAA	4 cut(s)	692, 902, 987, 1007
TspRI	CASTG	5 cut(s)	409, 619, 726, 936, 978
Van91I	CCANNNNNTGG	1 cut(s)	472
XapI	RAATTY	2 cut(s)	210, 994
XmnI	GAANNNNTTC	2 cut(s)	125, 586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.