Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8023038.1

Orthogroup ID

OG0001513

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 495

Gene Structure 494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8023038.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 494 bp

atgctatccgcttcctcaaggcgtttccgatgccacagagcagcagagctattcaaaccccctctgggtcccgacccgtttccgtttcggattcagaaatctccaccacttcccgacccgaacaaccggccatccttcaccaccgtaacttcatccatcaaccacactcacccctcttccgaatcacaacaacaaacactagtgacccaaattctctccaccattgaaaacgcccctacattacttcaatccctacacaacaaacgcatcttcctaacccccaaatctttcaaccgcgttttgatctcagccgcccaaagtaaccatctttacctcgtaacccaaatcttcgagctcgcaattgcttccaaaattcaacctttaaactcagattgctatctcactgtagccaaagcctttgcaagagcagatgattgtgttgtggagctgctcagttttaccgagcaagtattggaattgacccaaccgagcat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

164

Amino Acids

18.33

Weight (kDa)

8.93

Isoelectric Point (pI)

54.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11900
fragaria_vesca	FvH4_6g24020 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44670 FvH4_6g44670 FvH4_6g44670
malus_domestica	MD14G1065400.v1.1 MD17G1084400.v1.1
prunus_persica	Prupe.3G231200_v2.0.a1
pyrus_communis	pycom17g08150
rosa_chinensis	RchiOBHm_Chr1g0342741 RchiOBHm_Chr1g0342831 RchiOBHm_Chr2g0161831
rosa_laevigata	RLG00000021301 RLG00000029118 RLG00000029172 RLG00000029191
rosa_multiflora	Rmu_co8023038.1_g000001 Rmu_sc0001993.1_g000024 Rmu_sc0004502.1_g000002 Rmu_sc0011563.1_g000011
rosa_roxburghii	Rroxscaffold_2G00088520 Rroxscaffold_2G00088540 Rroxscaffold_2G00118030 Rroxscaffold_3G00231880 Rroxscaffold_4G00313190 Rroxscaffold_4G00313220 Rroxscaffold_7G00197130
rosa_rugosa	Rorug01G0146200.1 Rorug02G0492600
rosa_samantha	Rh1AG162400 Rh1AG162900 Rh1AG163800 Rh1AG164600 Rh1BG129700 Rh1CG152900 Rh1CG153400 Rh2AG558200 Rh2AG558300 Rh2CG541900 Rh2CG542300 Rh2DG581000 Rh2DG581900 Rh3CG249700
rosa_wichuraiana	Rw1G013300 Rw1G013340 Rw1G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	297
AciI	CCGC	3 cut(s)	9, 295, 312
AcoI	YGGCCR	1 cut(s)	128
AcsI	RAATTY	2 cut(s)	210, 372
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgsI	TTSAA	5 cut(s)	55, 227, 248, 292, 377
AhlI	ACTAGT	1 cut(s)	199
AluBI	AGCT	3 cut(s)	49, 355, 448
AluI	AGCT	3 cut(s)	49, 355, 448
Alw21I	GWGCWC	1 cut(s)	357
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	2 cut(s)	41, 448
ApoI	RAATTY	2 cut(s)	210, 372
AspS9I	GGNCC	1 cut(s)	68
AsuHPI	GGTGA	2 cut(s)	130, 161
AvaII	GGWCC	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	53, 435
BccI	CCATC	3 cut(s)	139, 164, 333
BcuI	ACTAGT	1 cut(s)	199
BfaI	CTAG	1 cut(s)	200
BfmI	CTRYAG	1 cut(s)	405
BisI	GCNGC	3 cut(s)	42, 312, 449
BlsI	GCNGC	3 cut(s)	43, 313, 450
Bme18I	GGWCC	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	2 cut(s)	69, 70
BmsI	GCATC	2 cut(s)	20, 276
BsaBI	GATNNNNATC	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse118I	RCCGGY	1 cut(s)	126
Bse8I	GATNNNNATC	1 cut(s)	396
BseGI	GGATG	2 cut(s)	131, 152
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMII	CTCAG	3 cut(s)	321, 402, 466
BseXI	GCAGC	2 cut(s)	53, 435
Bsh1236I	CGCG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	1 cut(s)	127
BslFI	GGGAC	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	54
BsnI	GGCC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	1 cut(s)	303
BspACI	CCGC	3 cut(s)	9, 295, 312
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	3 cut(s)	320, 401, 465
BspFNI	CGCG	1 cut(s)	297
BspLI	GGNNCC	2 cut(s)	69, 70
BsrFI	RCCGGY	1 cut(s)	126
BssAI	RCCGGY	1 cut(s)	126
BssMI	GATC	1 cut(s)	303
Bst4CI	ACNGT	2 cut(s)	145, 406
Bst6I	CTCTTC	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	3 cut(s)	307, 388, 452
BstF5I	GGATG	2 cut(s)	131, 152
BstFNI	CGCG	1 cut(s)	297
BstKTI	GATC	1 cut(s)	306
BstMBI	GATC	1 cut(s)	303
BstSFI	CTRYAG	1 cut(s)	405
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	2 cut(s)	53, 435
BsuRI	GGCC	1 cut(s)	130
BtsCI	GGATG	2 cut(s)	131, 152
BtsIMutI	CAGTG	1 cut(s)	402
Cac8I	GCNNGC	1 cut(s)	357
Cfr10I	RCCGGY	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	68
CviJI	RGCY	7 cut(s)	49, 130, 311, 355, 410, 416, 448
CviKI_1	RGCY	7 cut(s)	49, 130, 311, 355, 410, 416, 448
DdeI	CTNAG	3 cut(s)	307, 388, 452
DpnI	GATC	1 cut(s)	305
DpnII	GATC	1 cut(s)	303
DraI	TTTAAA	1 cut(s)	384
EaeI	YGGCCR	1 cut(s)	128
Eam1104I	CTCTTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	181
Ecl136II	GAGCTC	1 cut(s)	355
Eco24I	GRGCYC	1 cut(s)	357
Eco47I	GGWCC	1 cut(s)	68
Eco53kI	GAGCTC	1 cut(s)	355
EcoICRI	GAGCTC	1 cut(s)	355
EcoO109I	RGGNCCY	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	357
FaqI	GGGAC	1 cut(s)	54
Fnu4HI	GCNGC	3 cut(s)	42, 312, 449
FokI	GGATG	2 cut(s)	118, 139
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	3 cut(s)	42, 312, 449
FspBI	CTAG	1 cut(s)	200
GluI	GCNGC	3 cut(s)	42, 312, 449
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	1 cut(s)	127
HinfI	GANTC	2 cut(s)	91, 182
HpaII	CCGG	1 cut(s)	127
HphI	GGTGA	2 cut(s)	130, 161
Hpy188I	TCNGA	5 cut(s)	29, 90, 96, 181, 391
Hpy188III	TCNNGA	2 cut(s)	71, 113
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	2 cut(s)	145, 406
HpyCH4V	TGCA	1 cut(s)	422
HpyF3I	CTNAG	3 cut(s)	307, 388, 452
KflI	GGGWCCC	1 cut(s)	68
Kzo9I	GATC	1 cut(s)	303
LmnI	GCTCC	1 cut(s)	445
LpnPI	CCDG	2 cut(s)	50, 140
Lsp1109I	GCAGC	2 cut(s)	53, 435
LweI	GCATC	2 cut(s)	20, 276
MaeI	CTAG	1 cut(s)	200
MaeIII	GTNAC	4 cut(s)	145, 202, 320, 337
MalI	GATC	1 cut(s)	305
MboI	GATC	1 cut(s)	303
MboII	GAAGA	3 cut(s)	168, 262, 340
MfeI	CAATTG	1 cut(s)	360
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	4 cut(s)	210, 360, 372, 476
MnlI	CCTC	4 cut(s)	25, 72, 184, 344
MseI	TTAA	1 cut(s)	383
MspI	CCGG	1 cut(s)	127
MunI	CAATTG	1 cut(s)	360
MvnI	CGCG	1 cut(s)	297
NdeII	GATC	1 cut(s)	303
NlaIV	GGNNCC	2 cut(s)	69, 70
NmuCI	GTSAC	1 cut(s)	202
PfeI	GAWTC	2 cut(s)	91, 182
PkrI	GCNGC	3 cut(s)	43, 313, 450
PpuMI	RGGWCCY	1 cut(s)	68
Psp124BI	GAGCTC	1 cut(s)	357
Psp5II	RGGWCCY	1 cut(s)	68
PspN4I	GGNNCC	2 cut(s)	69, 70
PspPI	GGNCC	1 cut(s)	68
PspPPI	RGGWCCY	1 cut(s)	68
SacI	GAGCTC	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	383
SatI	GCNGC	3 cut(s)	42, 312, 449
Sau3AI	GATC	1 cut(s)	303
Sau96I	GGNCC	1 cut(s)	68
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	5 cut(s)	51, 336, 357, 382, 450
SfaNI	GCATC	2 cut(s)	20, 276
SfcI	CTRYAG	1 cut(s)	405
SinI	GGWCC	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
SpeI	ACTAGT	1 cut(s)	199
Sse9I	AATT	4 cut(s)	210, 360, 372, 476
SsiI	CCGC	3 cut(s)	9, 295, 312
SspMI	CTAG	1 cut(s)	200
SstI	GAGCTC	1 cut(s)	357
TaaI	ACNGT	2 cut(s)	145, 406
TaqI	TCGA	1 cut(s)	351
TasI	AATT	4 cut(s)	210, 360, 372, 476
TauI	GCSGC	1 cut(s)	314
TfiI	GAWTC	2 cut(s)	91, 182
Tru1I	TTAA	1 cut(s)	383
Tru9I	TTAA	1 cut(s)	383
TscAI	CASTG	1 cut(s)	409
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	2 cut(s)	41, 448
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	1 cut(s)	141
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	1 cut(s)	409
VpaK11BI	GGWCC	1 cut(s)	68
XapI	RAATTY	2 cut(s)	210, 372
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.