Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001513

Physical Location & Seq

Genomic Coordinates Forward (+)

34344736 .. 34348978

Gene Structure 4243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g44590.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGCTCTCCTCTTCCTCGAGGCTTTTCCGATCCCACAAAGCAGCAGAGCTACTCATTCCCACTCTCTCTCCCGATCCGTTTCTCATTCGGATCCATAAATCTCCACCACTCCCAAACCCGAACACCTTCCCATCCTTCACCACCGCAACAACATCCACCAACAACAACACTCACCCCTCTTCCCAATCACAACAACAAACACTACTCACTCAAATCCTATCCTCCATCGAAAACGCCCCCACATTACTTCAATCCCTACACAACCAACACATCTCCCTAAACCCAACATCCTTCAACCTTGTTCTGATCTCCGCCGCCCAAAGAAACCATCTTCACCTCGTAACACAAATCTTCAAACTCGCAGTTGCTTCCAAAACACAACCCTTGAACTCAAACTGCTATCTCACTGTCGCCAAAGCCTTTGCAAAAGCAGAGGACTCTGTTCCCGAGCTCCTCAGTTTCACCGACGAAGTGTTGAAAGTGACCCGACCGAGCATGACAGTTATAAACAGACTCCTCTTTGCATTTGGTCAACTCAAAGAGACTGATACTGCAGCTTTGGTCTTTGCCCATGTCAAAGATCGAAGCTTTTTGCCGGATTTGTACACGTACAACACTGTTATGGAGATATTGGGCCGGGCGGGTCGGACCGGTGAGACGCTGGGGCTGTTTAGGGAGATGAAGGAAGCTGGGATTGACCCGGATTTGGTTTCTTACAATACAGTGATAAACCATGTGAGGAAGTTTGGGGAAGTTGAAATGTGCTTGTTGTATTTTAAGGAAATGTGTGAAATGGGGGTGCAGCCTGATTTGCTGACTTATACTGCGGTCATTGATGGGTTGGGGAGGTCAGGGAATATTGAGGAGTCATTGAGGTTGTTTGATCAGATGAAGGAGAGGCGGATTCGGCCTTCGGTGTATCTGTATAGGGCAGTGATCAGTAATTTGAAGAAGATGGGGAAGGTGGAGATGGCAGTGAGTTTGATGGAGGAGATGAATTCATGTGCTTCAGGTGTTTCTAGTCCGAGATGGGATAAACGCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

349

Amino Acids

39.0

Weight (kDa)

8.96

Isoelectric Point (pI)

48.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	188 - 245	9.9e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	199 - 245	1.5e-11	PPR repeat family
PPR	PF01535	202 - 232	7.7e-06	PPR repeat
PPR_long	PF17177	202 - 337	2.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	234 - 282	4e-12	PPR repeat family
PPR_3	PF13812	259 - 314	1.9e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	265 - 298	2.7e-09	PPR repeat
PPR_2	PF13041	273 - 316	3.1e-09	PPR repeat family
PPR	PF01535	273 - 302	5.3e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11900
fragaria_vesca	FvH4_6g24020 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44670 FvH4_6g44670 FvH4_6g44670
malus_domestica	MD14G1065400.v1.1 MD17G1084400.v1.1
prunus_persica	Prupe.3G231200_v2.0.a1
pyrus_communis	pycom17g08150
rosa_chinensis	RchiOBHm_Chr1g0342741 RchiOBHm_Chr1g0342831 RchiOBHm_Chr2g0161831
rosa_laevigata	RLG00000021301 RLG00000029118 RLG00000029172 RLG00000029191
rosa_multiflora	Rmu_co8023038.1_g000001 Rmu_sc0001993.1_g000024 Rmu_sc0004502.1_g000002 Rmu_sc0011563.1_g000011
rosa_roxburghii	Rroxscaffold_2G00088520 Rroxscaffold_2G00088540 Rroxscaffold_2G00118030 Rroxscaffold_3G00231880 Rroxscaffold_4G00313190 Rroxscaffold_4G00313220 Rroxscaffold_7G00197130
rosa_rugosa	Rorug01G0146200.1 Rorug02G0492600
rosa_samantha	Rh1AG162400 Rh1AG162900 Rh1AG163800 Rh1AG164600 Rh1BG129700 Rh1CG152900 Rh1CG153400 Rh2AG558200 Rh2AG558300 Rh2CG541900 Rh2CG542300 Rh2DG581000 Rh2DG581900 Rh3CG249700
rosa_wichuraiana	Rw1G013300 Rw1G013340 Rw1G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	506
AbsI	CCTCGAGG	1 cut(s)	16
AciI	CCGC	6 cut(s)	144, 312, 315, 641, 827, 901
AclWI	GGATC	4 cut(s)	24, 68, 85, 98
AcsI	RAATTY	1 cut(s)	997
AcuI	CTGAAG	1 cut(s)	993
AfaI	GTAC	2 cut(s)	605, 611
AfiI	CCNNNNNNNGG	1 cut(s)	706
AflIII	ACRYGT	1 cut(s)	606
AgeI	ACCGGT	1 cut(s)	650
AgsI	TTSAA	7 cut(s)	251, 295, 355, 388, 478, 758, 949
AluBI	AGCT	5 cut(s)	49, 451, 557, 588, 689
AluI	AGCT	5 cut(s)	49, 451, 557, 588, 689
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	2 cut(s)	536, 650
AlwI	GGATC	4 cut(s)	24, 68, 85, 98
Ama87I	CYCGRG	2 cut(s)	16, 446
AoxI	GGCC	2 cut(s)	634, 908
ApeKI	GCWGC	3 cut(s)	41, 554, 802
ApoI	RAATTY	1 cut(s)	997
AsiGI	ACCGGT	1 cut(s)	650
Asp700I	GAANNNNTTC	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	634, 648
AsuC2I	CCSGG	2 cut(s)	638, 701
AsuHPI	GGTGA	5 cut(s)	130, 164, 326, 454, 665
AvaI	CYCGRG	2 cut(s)	16, 446
AvaII	GGWCC	1 cut(s)	648
BamHI	GGATCC	1 cut(s)	90
BanII	GRGCYC	1 cut(s)	453
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	3 cut(s)	53, 566, 814
BccI	CCATC	8 cut(s)	139, 233, 336, 830, 949, 964, 979, 1023
BclI	TGATCA	2 cut(s)	883, 936
BcnI	CCSGG	2 cut(s)	638, 701
BcoDI	GTCTC	2 cut(s)	536, 650
BfaI	CTAG	1 cut(s)	1020
BfmI	CTRYAG	1 cut(s)	552
BisI	GCNGC	4 cut(s)	42, 315, 555, 803
BlsI	GCNGC	4 cut(s)	43, 316, 556, 804
Bme1390I	CCNGG	2 cut(s)	638, 701
Bme18I	GGWCC	1 cut(s)	648
BmeT110I	CYCGRG	2 cut(s)	16, 446
BmgT120I	GGNCC	2 cut(s)	634, 648
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	2 cut(s)	638, 701
BpuMI	CCSGG	2 cut(s)	638, 701
BsaAI	YACGTR	1 cut(s)	609
BsaWI	WCCGGW	1 cut(s)	650
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bsc4I	CCNNNNNNNGG	1 cut(s)	706
Bse118I	RCCGGY	2 cut(s)	650, 1041
BseGI	GGATG	3 cut(s)	131, 152, 287
BseLI	CCNNNNNNNGG	1 cut(s)	706
BseMII	CTCAG	1 cut(s)	469
BseRI	GAGGAG	4 cut(s)	443, 506, 878, 1004
BseXI	GCAGC	3 cut(s)	53, 566, 814
BseYI	CCCAGC	2 cut(s)	661, 689
BsgI	GTGCAG	1 cut(s)	821
Bsh1285I	CGRYCG	1 cut(s)	491
BshFI	GGCC	2 cut(s)	636, 910
BshTI	ACCGGT	1 cut(s)	650
BsiEI	CGRYCG	1 cut(s)	491
BsiHKAI	GWGCWC	1 cut(s)	453
BsiHKCI	CYCGRG	2 cut(s)	16, 446
BsiSI	CCGG	5 cut(s)	596, 637, 651, 701, 1042
BslI	CCNNNNNNNGG	1 cut(s)	706
BsmAI	GTCTC	2 cut(s)	536, 650
BsmBI	CGTCTC	1 cut(s)	650
BsnI	GGCC	2 cut(s)	636, 910
BsoBI	CYCGRG	2 cut(s)	16, 446
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp1407I	TGTACA	1 cut(s)	603
Bsp143I	GATC	7 cut(s)	29, 73, 90, 306, 580, 883, 936
BspACI	CCGC	6 cut(s)	144, 312, 315, 641, 827, 901
BspANI	GGCC	2 cut(s)	636, 910
BspCNI	CTCAG	1 cut(s)	468
BspLI	GGNNCC	1 cut(s)	92
BspMAI	CTGCAG	1 cut(s)	556
BspPI	GGATC	4 cut(s)	24, 68, 85, 98
BsrFI	RCCGGY	2 cut(s)	650, 1041
BsrGI	TGTACA	1 cut(s)	603
BssAI	RCCGGY	2 cut(s)	650, 1041
BssMI	GATC	7 cut(s)	29, 73, 90, 306, 580, 883, 936
Bst4CI	ACNGT	4 cut(s)	409, 502, 619, 724
Bst6I	CTCTTC	2 cut(s)	16, 184
BstAUI	TGTACA	1 cut(s)	603
BstBAI	YACGTR	1 cut(s)	609
BstDEI	CTNAG	1 cut(s)	455
BstF5I	GGATG	3 cut(s)	131, 152, 287
BstKTI	GATC	7 cut(s)	32, 76, 93, 309, 583, 886, 939
BstMAI	GTCTC	2 cut(s)	536, 650
BstMBI	GATC	7 cut(s)	29, 73, 90, 306, 580, 883, 936
BstMCI	CGRYCG	1 cut(s)	491
BstMWI	GCNNNNNNNGC	2 cut(s)	811, 907
BstSCI	CCNGG	2 cut(s)	636, 699
BstSFI	CTRYAG	1 cut(s)	552
BstV1I	GCAGC	3 cut(s)	53, 566, 814
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
BsuRI	GGCC	2 cut(s)	636, 910
BtsCI	GGATG	3 cut(s)	131, 152, 287
BtsI	GCAGTG	2 cut(s)	939, 981
BtsIMutI	CAGTG	5 cut(s)	405, 615, 729, 939, 981
Cfr10I	RCCGGY	2 cut(s)	650, 1041
Cfr13I	GGNCC	2 cut(s)	634, 648
CpoI	CGGWCCG	1 cut(s)	648
CseI	GACGC	1 cut(s)	667
Csp6I	GTAC	2 cut(s)	604, 610
CspAI	ACCGGT	1 cut(s)	650
CspI	CGGWCCG	1 cut(s)	648
CviAII	CATG	4 cut(s)	496, 572, 734, 1002
CviQI	GTAC	2 cut(s)	604, 610
DdeI	CTNAG	1 cut(s)	455
DpnI	GATC	7 cut(s)	31, 75, 92, 308, 582, 885, 938
DpnII	GATC	7 cut(s)	29, 73, 90, 306, 580, 883, 936
Eam1104I	CTCTTC	2 cut(s)	16, 184
EarI	CTCTTC	2 cut(s)	16, 184
EciI	GGCGGA	2 cut(s)	301, 916
Ecl136II	GAGCTC	1 cut(s)	451
Eco24I	GRGCYC	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	648
Eco53kI	GAGCTC	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	993
Eco88I	CYCGRG	2 cut(s)	16, 446
EcoICRI	GAGCTC	1 cut(s)	451
EcoRI	GAATTC	1 cut(s)	997
EcoT38I	GRGCYC	1 cut(s)	453
Esp3I	CGTCTC	1 cut(s)	650
FaeI	CATG	4 cut(s)	499, 575, 737, 1005
FaiI	YATR	9 cut(s)	96, 497, 506, 573, 623, 735, 822, 927, 1003
FatI	CATG	4 cut(s)	495, 571, 733, 1001
FauI	CCCGC	1 cut(s)	634
FbaI	TGATCA	2 cut(s)	883, 936
Fnu4HI	GCNGC	4 cut(s)	42, 315, 555, 803
FokI	GGATG	3 cut(s)	118, 139, 274
FriOI	GRGCYC	1 cut(s)	453
Fsp4HI	GCNGC	4 cut(s)	42, 315, 555, 803
FspBI	CTAG	1 cut(s)	1020
GluI	GCNGC	4 cut(s)	42, 315, 555, 803
GsaI	CCCAGC	2 cut(s)	665, 693
HaeIII	GGCC	2 cut(s)	636, 910
HapII	CCGG	5 cut(s)	596, 637, 651, 701, 1042
HgaI	GACGC	1 cut(s)	667
Hin1II	CATG	4 cut(s)	499, 575, 737, 1005
HincII	GTYRAC	1 cut(s)	533
HindII	GTYRAC	1 cut(s)	533
HindIII	AAGCTT	1 cut(s)	586
HinfI	GANTC	4 cut(s)	437, 513, 866, 904
HpaII	CCGG	5 cut(s)	596, 637, 651, 701, 1042
HphI	GGTGA	5 cut(s)	130, 164, 326, 454, 665
Hpy166II	GTNNAC	2 cut(s)	533, 606
Hpy188I	TCNGA	6 cut(s)	29, 90, 306, 648, 888, 1026
Hpy188III	TCNNGA	2 cut(s)	71, 446
Hpy8I	GTNNAC	2 cut(s)	533, 606
Hpy99I	CGWCG	1 cut(s)	470
HpyAV	CCTTC	7 cut(s)	136, 145, 301, 676, 886, 921, 955
HpyCH4III	ACNGT	4 cut(s)	409, 502, 619, 724
HpyCH4IV	ACGT	1 cut(s)	608
HpyCH4V	TGCA	4 cut(s)	425, 524, 554, 802
HpyF10VI	GCNNNNNNNGC	2 cut(s)	811, 907
HpyF3I	CTNAG	1 cut(s)	455
HpySE526I	ACGT	1 cut(s)	608
Hsp92II	CATG	4 cut(s)	499, 575, 737, 1005
Ksp22I	TGATCA	2 cut(s)	883, 936
Kzo9I	GATC	7 cut(s)	29, 73, 90, 306, 580, 883, 936
LmnI	GCTCC	1 cut(s)	456
LpnPI	CCDG	9 cut(s)	609, 647, 650, 664, 675, 714, 819, 837, 996
Lsp1109I	GCAGC	3 cut(s)	53, 566, 814
MaeI	CTAG	1 cut(s)	1020
MaeII	ACGT	1 cut(s)	608
MaeIII	GTNAC	2 cut(s)	340, 481
MalI	GATC	7 cut(s)	31, 75, 92, 308, 582, 885, 938
MboI	GATC	7 cut(s)	29, 73, 90, 306, 580, 883, 936
MboII	GAAGA	6 cut(s)	3, 171, 323, 343, 961, 964
MflI	RGATCY	1 cut(s)	90
MhlI	GDGCHC	1 cut(s)	453
MluCI	AATT	2 cut(s)	943, 997
MlyI	GAGTC	3 cut(s)	431, 507, 875
MmeI	TCCRAC	1 cut(s)	626
MroXI	GAANNNNTTC	1 cut(s)	125
MseI	TTAA	1 cut(s)	777
MslI	CAYNNNNRTG	1 cut(s)	620
MspI	CCGG	5 cut(s)	596, 637, 651, 701, 1042
MspR9I	CCNGG	2 cut(s)	638, 701
MwoI	GCNNNNNNNGC	2 cut(s)	811, 907
NciI	CCSGG	2 cut(s)	638, 701
NdeII	GATC	7 cut(s)	29, 73, 90, 306, 580, 883, 936
NlaIII	CATG	4 cut(s)	499, 575, 737, 1005
NlaIV	GGNNCC	1 cut(s)	92
NmuCI	GTSAC	1 cut(s)	481
PaeR7I	CTCGAG	1 cut(s)	16
PdmI	GAANNNNTTC	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	904
PinAI	ACCGGT	1 cut(s)	650
PkrI	GCNGC	4 cut(s)	43, 316, 556, 804
PleI	GAGTC	3 cut(s)	431, 507, 874
PpsI	GAGTC	3 cut(s)	431, 507, 874
Ppu21I	YACGTR	1 cut(s)	609
PsiI	TTATAA	1 cut(s)	506
Psp124BI	GAGCTC	1 cut(s)	453
PspFI	CCCAGC	2 cut(s)	661, 689
PspN4I	GGNNCC	1 cut(s)	92
PspPI	GGNCC	2 cut(s)	634, 648
PspXI	VCTCGAGB	1 cut(s)	16
PstI	CTGCAG	1 cut(s)	556
PsuI	RGATCY	1 cut(s)	90
RsaI	GTAC	2 cut(s)	605, 611
RsaNI	GTAC	2 cut(s)	604, 610
RseI	CAYNNNNRTG	1 cut(s)	620
Rsr2I	CGGWCCG	1 cut(s)	648
RsrII	CGGWCCG	1 cut(s)	648
SacI	GAGCTC	1 cut(s)	453
SaqAI	TTAA	1 cut(s)	777
SatI	GCNGC	4 cut(s)	42, 315, 555, 803
Sau3AI	GATC	7 cut(s)	29, 73, 90, 306, 580, 883, 936
Sau96I	GGNCC	2 cut(s)	634, 648
SchI	GAGTC	3 cut(s)	431, 507, 875
ScrFI	CCNGG	2 cut(s)	638, 701
SduI	GDGCHC	1 cut(s)	453
SfcI	CTRYAG	1 cut(s)	552
Sfr274I	CTCGAG	1 cut(s)	16
SinI	GGWCC	1 cut(s)	648
SlaI	CTCGAG	1 cut(s)	16
SmiMI	CAYNNNNRTG	1 cut(s)	620
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	2 cut(s)	943, 997
SsiI	CCGC	6 cut(s)	144, 312, 315, 641, 827, 901
SspI	AATATT	1 cut(s)	859
SspMI	CTAG	1 cut(s)	1020
SstI	GAGCTC	1 cut(s)	453
StyD4I	CCNGG	2 cut(s)	636, 699
TaaI	ACNGT	4 cut(s)	409, 502, 619, 724
TaiI	ACGT	1 cut(s)	611
TaqI	TCGA	3 cut(s)	17, 228, 583
TaqII	GACCGA	1 cut(s)	505
TasI	AATT	2 cut(s)	943, 997
TatI	WGTACW	1 cut(s)	603
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	1 cut(s)	904
Tru1I	TTAA	1 cut(s)	777
Tru9I	TTAA	1 cut(s)	777
TscAI	CASTG	5 cut(s)	412, 622, 729, 939, 981
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	3 cut(s)	41, 554, 802
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	4 cut(s)	695, 905, 990, 1010
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	5 cut(s)	412, 622, 729, 939, 981
VpaK11BI	GGWCC	1 cut(s)	648
XapI	RAATTY	1 cut(s)	997
XhoI	CTCGAG	1 cut(s)	16
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	1 cut(s)	1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.