Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001513

Physical Location & Seq

Genomic Coordinates Forward (+)

81274440 .. 81274971

Gene Structure 532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG581900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGACAGTAATAAACAGACTTCTCTTTGCATTTGGTCTATGCGAAGAGACCGATAGTGCAATTTTGATCTTTGCCCAGGTGAAAGATAGAAACTTTGTACCGGATTTGTACACATACAAAACTGTTTTTGAGATATTGGGCCGGGCGGGTCGTACAGGTGAAATGCTGGGGCTGTCTGGGGAAATGAAGGAAGCTGGGATTGACCAGGATTTGGTTTCTTACAATATAGTGATAAACCAATTGAGGAAGTTTGGAGAGTCATTGATGGGTTTGGGGAGGTCAGAAAATATTGAGGAGTCTTTGAGGTTCTTCGATGAGATGATGGAGAGGCGGATTCAGCCTTCGTTGTATCTTTATAGAGCAGTGATCAGTAATTTGAAAGATTGGGAAGGTGGAGATGGCAGTGACTTTCATGGAGGAGATGAGTTGATGTGCTTCAAGTCTTGCCAGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

151

Amino Acids

17.16

Weight (kDa)

4.69

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11900
fragaria_vesca	FvH4_6g24020 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44670 FvH4_6g44670 FvH4_6g44670
malus_domestica	MD14G1065400.v1.1 MD17G1084400.v1.1
prunus_persica	Prupe.3G231200_v2.0.a1
pyrus_communis	pycom17g08150
rosa_chinensis	RchiOBHm_Chr1g0342741 RchiOBHm_Chr1g0342831 RchiOBHm_Chr2g0161831
rosa_laevigata	RLG00000021301 RLG00000029118 RLG00000029172 RLG00000029191
rosa_multiflora	Rmu_co8023038.1_g000001 Rmu_sc0001993.1_g000024 Rmu_sc0004502.1_g000002 Rmu_sc0011563.1_g000011
rosa_roxburghii	Rroxscaffold_2G00088520 Rroxscaffold_2G00088540 Rroxscaffold_2G00118030 Rroxscaffold_3G00231880 Rroxscaffold_4G00313190 Rroxscaffold_4G00313220 Rroxscaffold_7G00197130
rosa_rugosa	Rorug01G0146200.1 Rorug02G0492600
rosa_samantha	Rh1AG162400 Rh1AG162900 Rh1AG163800 Rh1AG164600 Rh1BG129700 Rh1CG152900 Rh1CG153400 Rh2AG558200 Rh2AG558300 Rh2CG541900 Rh2CG542300 Rh2DG581000 Rh2DG581900 Rh3CG249700
rosa_wichuraiana	Rw1G013300 Rw1G013340 Rw1G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	211
AciI	CCGC	2 cut(s)	146, 331
AfaI	GTAC	3 cut(s)	99, 110, 154
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgsI	TTSAA	2 cut(s)	379, 439
AjnI	CCWGG	2 cut(s)	75, 204
AluBI	AGCT	1 cut(s)	194
AluI	AGCT	1 cut(s)	194
Alw26I	GTCTC	1 cut(s)	41
AoxI	GGCC	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	139
AsuC2I	CCSGG	1 cut(s)	143
AsuHPI	GGTGA	2 cut(s)	91, 170
BccI	CCATC	3 cut(s)	259, 316, 392
BciT130I	CCWGG	2 cut(s)	77, 206
BclI	TGATCA	1 cut(s)	366
BcnI	CCSGG	1 cut(s)	143
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	1 cut(s)	454
Bme1390I	CCNGG	3 cut(s)	77, 143, 206
BmgT120I	GGNCC	1 cut(s)	139
BmrFI	CCNGG	3 cut(s)	77, 143, 206
BpuMI	CCSGG	1 cut(s)	143
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse1I	ACTGG	1 cut(s)	448
BseBI	CCWGG	2 cut(s)	77, 206
BseDI	CCNNGG	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseNI	ACTGG	1 cut(s)	448
BseRI	GAGGAG	2 cut(s)	308, 432
BseYI	CCCAGC	2 cut(s)	166, 194
BshFI	GGCC	1 cut(s)	141
BsiSI	CCGG	2 cut(s)	101, 142
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	41
BsnI	GGCC	1 cut(s)	141
Bso31I	GGTCTC	1 cut(s)	41
Bsp1407I	TGTACA	1 cut(s)	108
Bsp143I	GATC	2 cut(s)	66, 366
BspACI	CCGC	2 cut(s)	146, 331
BspANI	GGCC	1 cut(s)	141
BspTNI	GGTCTC	1 cut(s)	41
BsrGI	TGTACA	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	448
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	2 cut(s)	66, 366
Bst2UI	CCWGG	2 cut(s)	77, 206
Bst4CI	ACNGT	2 cut(s)	7, 124
Bst6I	CTCTTC	1 cut(s)	39
BstAUI	TGTACA	1 cut(s)	108
BstKTI	GATC	2 cut(s)	69, 369
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	2 cut(s)	66, 366
BstMWI	GCNNNNNNNGC	1 cut(s)	337
BstNI	CCWGG	2 cut(s)	77, 206
BstSCI	CCNGG	3 cut(s)	75, 141, 204
BsuRI	GGCC	1 cut(s)	141
BtsI	GCAGTG	2 cut(s)	369, 409
BtsIMutI	CAGTG	2 cut(s)	369, 409
Cfr13I	GGNCC	1 cut(s)	139
Csp6I	GTAC	3 cut(s)	98, 109, 153
CviAII	CATG	1 cut(s)	413
CviJI	RGCY	4 cut(s)	141, 172, 194, 340
CviKI_1	RGCY	4 cut(s)	141, 172, 194, 340
CviQI	GTAC	3 cut(s)	98, 109, 153
DpnI	GATC	2 cut(s)	68, 368
DpnII	GATC	2 cut(s)	66, 366
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
EciI	GGCGGA	1 cut(s)	346
Eco31I	GGTCTC	1 cut(s)	41
EcoRII	CCWGG	2 cut(s)	75, 204
FaeI	CATG	1 cut(s)	416
FaiI	YATR	5 cut(s)	40, 115, 227, 357, 414
FatI	CATG	1 cut(s)	412
FauI	CCCGC	1 cut(s)	139
FbaI	TGATCA	1 cut(s)	366
FspBI	CTAG	1 cut(s)	454
GsaI	CCCAGC	2 cut(s)	170, 198
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	2 cut(s)	101, 142
Hin1II	CATG	1 cut(s)	416
HinfI	GANTC	3 cut(s)	257, 296, 334
HpaII	CCGG	2 cut(s)	101, 142
HphI	GGTGA	2 cut(s)	91, 170
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	1 cut(s)	283
Hpy8I	GTNNAC	1 cut(s)	111
HpyAV	CCTTC	3 cut(s)	181, 351, 383
HpyCH4III	ACNGT	2 cut(s)	7, 124
HpyCH4V	TGCA	2 cut(s)	29, 59
HpyF10VI	GCNNNNNNNGC	1 cut(s)	337
Hsp92II	CATG	1 cut(s)	416
Ksp22I	TGATCA	1 cut(s)	366
Kzo9I	GATC	2 cut(s)	66, 366
MaeI	CTAG	1 cut(s)	454
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	2 cut(s)	68, 368
MboI	GATC	2 cut(s)	66, 366
MboII	GAAGA	2 cut(s)	56, 301
MfeI	CAATTG	1 cut(s)	239
MluCI	AATT	3 cut(s)	60, 239, 373
MlyI	GAGTC	2 cut(s)	266, 305
MnlI	CCTC	6 cut(s)	237, 270, 286, 297, 321, 410
MspI	CCGG	2 cut(s)	101, 142
MspR9I	CCNGG	3 cut(s)	77, 143, 206
MunI	CAATTG	1 cut(s)	239
MvaI	CCWGG	2 cut(s)	77, 206
MwoI	GCNNNNNNNGC	1 cut(s)	337
NciI	CCSGG	1 cut(s)	143
NdeII	GATC	2 cut(s)	66, 366
NlaIII	CATG	1 cut(s)	416
NmuCI	GTSAC	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	334
PflMI	CCANNNNNTGG	1 cut(s)	211
PleI	GAGTC	2 cut(s)	265, 304
PpsI	GAGTC	2 cut(s)	265, 304
Psp6I	CCWGG	2 cut(s)	75, 204
PspFI	CCCAGC	2 cut(s)	166, 194
PspGI	CCWGG	2 cut(s)	75, 204
PspPI	GGNCC	1 cut(s)	139
RsaI	GTAC	3 cut(s)	99, 110, 154
RsaNI	GTAC	3 cut(s)	98, 109, 153
Sau3AI	GATC	2 cut(s)	66, 366
Sau96I	GGNCC	1 cut(s)	139
SchI	GAGTC	2 cut(s)	266, 305
ScrFI	CCNGG	3 cut(s)	77, 143, 206
SetI	ASST	6 cut(s)	81, 160, 196, 281, 308, 394
Sse9I	AATT	3 cut(s)	60, 239, 373
SsiI	CCGC	2 cut(s)	146, 331
SspI	AATATT	1 cut(s)	289
SspMI	CTAG	1 cut(s)	454
StyD4I	CCNGG	3 cut(s)	75, 141, 204
TaaI	ACNGT	2 cut(s)	7, 124
TaqI	TCGA	1 cut(s)	312
TaqII	GACCGA	1 cut(s)	65
TasI	AATT	3 cut(s)	60, 239, 373
TatI	WGTACW	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	334
TscAI	CASTG	2 cut(s)	369, 409
TseFI	GTSAC	1 cut(s)	404
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	2 cut(s)	200, 401
TspRI	CASTG	2 cut(s)	369, 409
Van91I	CCANNNNNTGG	1 cut(s)	211
XspI	CTAG	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.