Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001513

Physical Location & Seq

Genomic Coordinates Reverse (-)

40967192 .. 40968235

Gene Structure 1044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00197130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGCTCTCCGCTTCCTCAAGGTGTTTCCGATGCCACAGAGCAGCAGAGCTATTCAAACCCTACGGGTCCCGACCCATTTCCGATTCGGATTCAGAAATCTCCACCACTTCCCGACCCGAACAACCGCCCATCCTTCACCACCGTAACTTCATCCATCAACCACACTCACCCTCTTCCCAATCACAACAACAAACACTAGTGACCCAAATTCTCTCCACCATTGAAAACGCCCCTACATTACTCCAATCCCTACACAACAAACGCATCTTCCTAAACCCCAAATCCTTCAACCGCGTTTTGATCTCAGCCGCCCAAAGAAACCATCTTTACCTCGTAACCCAAATCTTCAAGCTCGCAATTGCTTCCAAAATTCAACCTTTAAACTCAGATTGCTATCTCACTGTAGCCAAAGCCTTTGCAACAGCAGATGATTGTGTTGTGGAGCTGCTCAGTTTTACCGAGCAAGTATTGGAATTGACCCAACCGAGCATGACAGTAATAAACAGGCTTCTCTTTGCATTTGGTCAATGCAAAGAGACTAATAATGCAATTTTGATCTTCACCCAGGTGAAAGATCGAAACTTTACTCCGGATATGTTCACATACAACACTGTTCTTGAGATATTGGGCCGGGCGGGTCGGACAGGTGAGATGCTGGGGGTGTTTGGGGAAATGAAGGAAGCTGGTATTGACCCGGATTTGGTTTCTTACAATACAGTGATAAACCATGTGAGGAAGTTTGGGGAAGTTGATATGTGCTTGTTGTATTTCAAGGAAATGTGTGAAAAGGGTGTTCATCCTGATTTGCTTACTTACACTGCAGTCATTGATGGGTTGGGGAGGTCAGGAGACATTGAGGAGTCGTTGAAGTTGTTTGGTGAGATGAAGGAGAGGCGGATTCGGCCTTCGTTGTATCTTTATAGAGCAGTGATTAGTAATTTGAAGAAGATGGGGAAGGTGGAGATGGCGGCGAGTTTTATGGAGGAGATGAATTCGTGTGCTTCAAGTTTTCGTGCTAGTCGTAAATCGAATAAATGCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

347

Amino Acids

39.18

Weight (kDa)

8.51

Isoelectric Point (pI)

38.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	177 - 288	6.2e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	186 - 243	1.8e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	197 - 243	4.2e-11	PPR repeat family
PPR	PF01535	200 - 230	6.5e-06	PPR repeat
PPR_2	PF13041	232 - 280	3.1e-12	PPR repeat family
PPR_3	PF13812	257 - 312	3.9e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	263 - 296	6.9e-09	PPR repeat
PPR_2	PF13041	267 - 314	1.5e-09	PPR repeat family
PPR	PF01535	271 - 300	1.8e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11900
fragaria_vesca	FvH4_6g24020 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44670 FvH4_6g44670 FvH4_6g44670
malus_domestica	MD14G1065400.v1.1 MD17G1084400.v1.1
prunus_persica	Prupe.3G231200_v2.0.a1
pyrus_communis	pycom17g08150
rosa_chinensis	RchiOBHm_Chr1g0342741 RchiOBHm_Chr1g0342831 RchiOBHm_Chr2g0161831
rosa_laevigata	RLG00000021301 RLG00000029118 RLG00000029172 RLG00000029191
rosa_multiflora	Rmu_co8023038.1_g000001 Rmu_sc0001993.1_g000024 Rmu_sc0004502.1_g000002 Rmu_sc0011563.1_g000011
rosa_roxburghii	Rroxscaffold_2G00088520 Rroxscaffold_2G00088540 Rroxscaffold_2G00118030 Rroxscaffold_3G00231880 Rroxscaffold_4G00313190 Rroxscaffold_4G00313220 Rroxscaffold_7G00197130
rosa_rugosa	Rorug01G0146200.1 Rorug02G0492600
rosa_samantha	Rh1AG162400 Rh1AG162900 Rh1AG163800 Rh1AG164600 Rh1BG129700 Rh1CG152900 Rh1CG153400 Rh2AG558200 Rh2AG558300 Rh2CG541900 Rh2CG542300 Rh2DG581000 Rh2DG581900 Rh3CG249700
rosa_wichuraiana	Rw1G013300 Rw1G013340 Rw1G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	294
AccIII	TCCGGA	1 cut(s)	589
AciI	CCGC	7 cut(s)	9, 125, 292, 309, 635, 895, 968
AcsI	RAATTY	3 cut(s)	207, 369, 991
AfiI	CCNNNNNNNGG	1 cut(s)	700
AgsI	TTSAA	9 cut(s)	55, 224, 289, 349, 374, 772, 868, 943, 1005
AhlI	ACTAGT	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	564
AleI	CACNNNNGTG	1 cut(s)	566
AluBI	AGCT	4 cut(s)	49, 352, 445, 683
AluI	AGCT	4 cut(s)	49, 352, 445, 683
Alw26I	GTCTC	2 cut(s)	530, 843
Aor13HI	TCCGGA	1 cut(s)	589
AoxI	GGCC	2 cut(s)	628, 902
ApeKI	GCWGC	2 cut(s)	41, 445
ApoI	RAATTY	3 cut(s)	207, 369, 991
AspS9I	GGNCC	2 cut(s)	66, 628
AsuC2I	CCSGG	2 cut(s)	632, 695
AsuHPI	GGTGA	6 cut(s)	128, 159, 553, 580, 659, 890
AvaII	GGWCC	1 cut(s)	66
BbvI	GCAGC	2 cut(s)	53, 432
BccI	CCATC	6 cut(s)	137, 162, 330, 824, 943, 958
BciT130I	CCWGG	1 cut(s)	566
BcnI	CCSGG	2 cut(s)	632, 695
BcoDI	GTCTC	2 cut(s)	530, 843
BcuI	ACTAGT	1 cut(s)	196
BfaI	CTAG	2 cut(s)	197, 1017
BfmI	CTRYAG	2 cut(s)	402, 819
BisI	GCNGC	4 cut(s)	42, 309, 446, 969
BlsI	GCNGC	4 cut(s)	43, 310, 447, 970
Bme1390I	CCNGG	3 cut(s)	566, 632, 695
Bme18I	GGWCC	1 cut(s)	66
BmgT120I	GGNCC	2 cut(s)	66, 628
BmiI	GGNNCC	2 cut(s)	67, 68
BmrFI	CCNGG	3 cut(s)	566, 632, 695
BmsI	GCATC	3 cut(s)	20, 273, 642
BpuEI	CTTGAG	1 cut(s)	638
BpuMI	CCSGG	2 cut(s)	632, 695
BsaBI	GATNNNNATC	1 cut(s)	393
BsaJI	CCNNGG	1 cut(s)	564
BsaWI	WCCGGW	1 cut(s)	589
Bsc4I	CCNNNNNNNGG	1 cut(s)	700
Bse8I	GATNNNNATC	1 cut(s)	393
BseAI	TCCGGA	1 cut(s)	589
BseBI	CCWGG	1 cut(s)	566
BseDI	CCNNGG	1 cut(s)	564
BseGI	GGATG	3 cut(s)	129, 150, 796
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	1 cut(s)	700
BseMII	CTCAG	3 cut(s)	318, 399, 463
BseRI	GAGGAG	2 cut(s)	872, 998
BseXI	GCAGC	2 cut(s)	53, 432
BseYI	CCCAGC	1 cut(s)	655
Bsh1236I	CGCG	1 cut(s)	294
BshFI	GGCC	2 cut(s)	630, 904
BsiSI	CCGG	3 cut(s)	590, 631, 695
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	700
BsmAI	GTCTC	2 cut(s)	530, 843
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	2 cut(s)	630, 904
Bsp13I	TCCGGA	1 cut(s)	589
Bsp143I	GATC	3 cut(s)	300, 555, 574
BspACI	CCGC	7 cut(s)	9, 125, 292, 309, 635, 895, 968
BspANI	GGCC	2 cut(s)	630, 904
BspCNI	CTCAG	3 cut(s)	317, 398, 462
BspEI	TCCGGA	1 cut(s)	589
BspFNI	CGCG	1 cut(s)	294
BspLI	GGNNCC	2 cut(s)	67, 68
BspMAI	CTGCAG	1 cut(s)	823
BssECI	CCNNGG	1 cut(s)	564
BssMI	GATC	3 cut(s)	300, 555, 574
Bst2UI	CCWGG	1 cut(s)	566
Bst4CI	ACNGT	5 cut(s)	143, 403, 496, 613, 718
Bst6I	CTCTTC	1 cut(s)	178
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	3 cut(s)	304, 385, 449
BstF5I	GGATG	3 cut(s)	129, 150, 796
BstFNI	CGCG	1 cut(s)	294
BstKTI	GATC	3 cut(s)	303, 558, 577
BstMAI	GTCTC	2 cut(s)	530, 843
BstMBI	GATC	3 cut(s)	300, 555, 574
BstMWI	GCNNNNNNNGC	1 cut(s)	901
BstNI	CCWGG	1 cut(s)	566
BstSCI	CCNGG	3 cut(s)	564, 630, 693
BstSFI	CTRYAG	2 cut(s)	402, 819
BstUI	CGCG	1 cut(s)	294
BstV1I	GCAGC	2 cut(s)	53, 432
BsuRI	GGCC	2 cut(s)	630, 904
BtsCI	GGATG	3 cut(s)	129, 150, 796
BtsI	GCAGTG	2 cut(s)	816, 933
BtsIMutI	CAGTG	5 cut(s)	399, 609, 723, 816, 933
Cac8I	GCNNGC	1 cut(s)	354
Cfr13I	GGNCC	2 cut(s)	66, 628
CviAII	CATG	2 cut(s)	490, 728
DdeI	CTNAG	3 cut(s)	304, 385, 449
DpnI	GATC	3 cut(s)	302, 557, 576
DpnII	GATC	3 cut(s)	300, 555, 574
DraI	TTTAAA	1 cut(s)	381
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
EciI	GGCGGA	1 cut(s)	910
Eco47I	GGWCC	1 cut(s)	66
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRI	GAATTC	1 cut(s)	991
EcoRII	CCWGG	1 cut(s)	564
FaeI	CATG	2 cut(s)	493, 731
FaiI	YATR	7 cut(s)	491, 596, 604, 729, 755, 921, 980
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	2 cut(s)	489, 727
FauI	CCCGC	1 cut(s)	628
Fnu4HI	GCNGC	4 cut(s)	42, 309, 446, 969
FokI	GGATG	3 cut(s)	116, 137, 783
Fsp4HI	GCNGC	4 cut(s)	42, 309, 446, 969
FspBI	CTAG	2 cut(s)	197, 1017
GluI	GCNGC	4 cut(s)	42, 309, 446, 969
GsaI	CCCAGC	1 cut(s)	659
HaeIII	GGCC	2 cut(s)	630, 904
HapII	CCGG	3 cut(s)	590, 631, 695
Hin1II	CATG	2 cut(s)	493, 731
HinfI	GANTC	4 cut(s)	83, 89, 860, 898
HpaII	CCGG	3 cut(s)	590, 631, 695
HphI	GGTGA	6 cut(s)	128, 159, 553, 580, 659, 890
Hpy166II	GTNNAC	1 cut(s)	600
Hpy188I	TCNGA	6 cut(s)	29, 82, 88, 94, 388, 642
Hpy188III	TCNNGA	6 cut(s)	69, 111, 590, 617, 800, 846
Hpy8I	GTNNAC	1 cut(s)	600
HpyAV	CCTTC	6 cut(s)	143, 295, 670, 880, 915, 949
HpyCH4III	ACNGT	5 cut(s)	143, 403, 496, 613, 718
HpyCH4V	TGCA	5 cut(s)	419, 518, 531, 548, 821
HpyF10VI	GCNNNNNNNGC	1 cut(s)	901
HpyF3I	CTNAG	3 cut(s)	304, 385, 449
Hsp92II	CATG	2 cut(s)	493, 731
KflI	GGGWCCC	1 cut(s)	66
Kpn2I	TCCGGA	1 cut(s)	589
Kzo9I	GATC	3 cut(s)	300, 555, 574
LmnI	GCTCC	1 cut(s)	442
Lsp1109I	GCAGC	2 cut(s)	53, 432
LweI	GCATC	3 cut(s)	20, 273, 642
MaeI	CTAG	2 cut(s)	197, 1017
MaeIII	GTNAC	3 cut(s)	143, 199, 334
MalI	GATC	3 cut(s)	302, 557, 576
MboI	GATC	3 cut(s)	300, 555, 574
MboII	GAAGA	6 cut(s)	165, 259, 337, 550, 955, 958
MfeI	CAATTG	1 cut(s)	357
MluCI	AATT	7 cut(s)	207, 357, 369, 473, 549, 937, 991
MlyI	GAGTC	1 cut(s)	869
MmeI	TCCRAC	1 cut(s)	620
MnlI	CCTC	8 cut(s)	25, 181, 341, 726, 834, 850, 885, 976
MroI	TCCGGA	1 cut(s)	589
MseI	TTAA	1 cut(s)	380
MslI	CAYNNNNRTG	1 cut(s)	566
MspI	CCGG	3 cut(s)	590, 631, 695
MspR9I	CCNGG	3 cut(s)	566, 632, 695
MunI	CAATTG	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	566
MvnI	CGCG	1 cut(s)	294
MwoI	GCNNNNNNNGC	1 cut(s)	901
NciI	CCSGG	2 cut(s)	632, 695
NdeII	GATC	3 cut(s)	300, 555, 574
NlaIII	CATG	2 cut(s)	493, 731
NlaIV	GGNNCC	2 cut(s)	67, 68
NmuCI	GTSAC	1 cut(s)	199
OliI	CACNNNNGTG	1 cut(s)	566
PcsI	WCGNNNNNNNCGW	1 cut(s)	1018
PfeI	GAWTC	3 cut(s)	83, 89, 898
PkrI	GCNGC	4 cut(s)	43, 310, 447, 970
PleI	GAGTC	1 cut(s)	868
PpsI	GAGTC	1 cut(s)	868
PpuMI	RGGWCCY	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	564
PspFI	CCCAGC	1 cut(s)	655
PspGI	CCWGG	1 cut(s)	564
PspN4I	GGNNCC	2 cut(s)	67, 68
PspPI	GGNCC	2 cut(s)	66, 628
PspPPI	RGGWCCY	1 cut(s)	66
PstI	CTGCAG	1 cut(s)	823
RseI	CAYNNNNRTG	1 cut(s)	566
SaqAI	TTAA	1 cut(s)	380
SatI	GCNGC	4 cut(s)	42, 309, 446, 969
Sau3AI	GATC	3 cut(s)	300, 555, 574
Sau96I	GGNCC	2 cut(s)	66, 628
SchI	GAGTC	1 cut(s)	869
ScrFI	CCNGG	3 cut(s)	566, 632, 695
SfaNI	GCATC	3 cut(s)	20, 273, 642
SfcI	CTRYAG	2 cut(s)	402, 819
SinI	GGWCC	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	566
SmlI	CTYRAG	2 cut(s)	16, 617
SmoI	CTYRAG	2 cut(s)	16, 617
SpeI	ACTAGT	1 cut(s)	196
Sse9I	AATT	7 cut(s)	207, 357, 369, 473, 549, 937, 991
SsiI	CCGC	7 cut(s)	9, 125, 292, 309, 635, 895, 968
SspMI	CTAG	2 cut(s)	197, 1017
StyD4I	CCNGG	3 cut(s)	564, 630, 693
TaaI	ACNGT	5 cut(s)	143, 403, 496, 613, 718
TaqI	TCGA	2 cut(s)	577, 1028
TasI	AATT	7 cut(s)	207, 357, 369, 473, 549, 937, 991
TauI	GCSGC	2 cut(s)	311, 971
TfiI	GAWTC	3 cut(s)	83, 89, 898
Tru1I	TTAA	1 cut(s)	380
Tru9I	TTAA	1 cut(s)	380
TscAI	CASTG	5 cut(s)	406, 616, 723, 823, 933
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	2 cut(s)	41, 445
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	5 cut(s)	139, 689, 785, 899, 1004
TspRI	CASTG	5 cut(s)	406, 616, 723, 823, 933
VpaK11BI	GGWCC	1 cut(s)	66
XapI	RAATTY	3 cut(s)	207, 369, 991
XspI	CTAG	2 cut(s)	197, 1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.