Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001513

Physical Location & Seq

Genomic Coordinates Reverse (-)

6989782 .. 6990357

Gene Structure 576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1065400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGAGATCACCTCTCCCAGCATGACAGTTATAAACAGGATTATCTTTGCTTTCGACGAATGTGGAGAGACTGAGAAGGCGCTTCTGATCTTTTCCCAGATGAAAACTCTTGATTTCGTGCCTAATTTGTACACCCACAACACTGTTTTAGAGATTTTAGGATGTGCCGGTCTGGTTGATGAAATGCTGGGTCAGTTCGGGTCTATGAAAGAGGCCGGCATTGCCCCTGATGTGGTTTCTTACAATACGGTGTTGAACAATTTGGGGAAGCTTGGGAAATTCGATGTGTGCTTGTTTTACTACAAGGAAATTGGTGAAAATGGTGTGAAGGCAGATTTGCTTACTTATACTGCAGTGATTGAGAGCCTGGGAAGATCAGGAAATGTTGAGGAGGCATTGAGATTCTTTGATGAGATGAAGGAGAGGCAGATTCGTCCTTTCCTGTATGTTTATCGGTCGCTGATCACAAACCTGAAGAAGATGGGGAAGGTGGACTTGGCATTGAGTTTAACAGATGAGATGAATTTGTGTGATTCGGAGCTTGCTGGTCCAATGGATTTCAAACGTAATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

192

Amino Acids

21.47

Weight (kDa)

4.85

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	30 - 90	9.6e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	47 - 89	1e-05	PPR repeat family
PPR_2	PF13041	76 - 123	1.5e-08	PPR repeat family
PPR_3	PF13812	103 - 156	1.8e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	107 - 140	2.3e-09	PPR repeat
PPR_2	PF13041	112 - 158	4.3e-10	PPR repeat family
PPR	PF01535	115 - 143	1.8e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11900
fragaria_vesca	FvH4_6g24020 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44670 FvH4_6g44670 FvH4_6g44670
malus_domestica	MD14G1065400.v1.1 MD17G1084400.v1.1
prunus_persica	Prupe.3G231200_v2.0.a1
pyrus_communis	pycom17g08150
rosa_chinensis	RchiOBHm_Chr1g0342741 RchiOBHm_Chr1g0342831 RchiOBHm_Chr2g0161831
rosa_laevigata	RLG00000021301 RLG00000029118 RLG00000029172 RLG00000029191
rosa_multiflora	Rmu_co8023038.1_g000001 Rmu_sc0001993.1_g000024 Rmu_sc0004502.1_g000002 Rmu_sc0011563.1_g000011
rosa_roxburghii	Rroxscaffold_2G00088520 Rroxscaffold_2G00088540 Rroxscaffold_2G00118030 Rroxscaffold_3G00231880 Rroxscaffold_4G00313190 Rroxscaffold_4G00313220 Rroxscaffold_7G00197130
rosa_rugosa	Rorug01G0146200.1 Rorug02G0492600
rosa_samantha	Rh1AG162400 Rh1AG162900 Rh1AG163800 Rh1AG164600 Rh1BG129700 Rh1CG152900 Rh1CG153400 Rh2AG558200 Rh2AG558300 Rh2CG541900 Rh2CG542300 Rh2DG581000 Rh2DG581900 Rh3CG249700
rosa_wichuraiana	Rw1G013300 Rw1G013340 Rw1G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	32
AcsI	RAATTY	2 cut(s)	278, 523
AcuI	CTGAAG	1 cut(s)	494
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgsI	TTSAA	2 cut(s)	256, 562
AjnI	CCWGG	1 cut(s)	366
AjuI	GAANNNNNNNTTGG	2 cut(s)	479, 511
AluBI	AGCT	2 cut(s)	271, 541
AluI	AGCT	2 cut(s)	271, 541
Alw26I	GTCTC	1 cut(s)	62
AoxI	GGCC	1 cut(s)	213
ApoI	RAATTY	2 cut(s)	278, 523
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	1 cut(s)	548
AsuHPI	GGTGA	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	548
BccI	CCATC	1 cut(s)	475
BciT130I	CCWGG	1 cut(s)	368
BclI	TGATCA	1 cut(s)	462
BcoDI	GTCTC	1 cut(s)	62
BfmI	CTRYAG	1 cut(s)	351
BfoI	RGCGCY	1 cut(s)	83
Bme1390I	CCNGG	1 cut(s)	368
Bme18I	GGWCC	1 cut(s)	548
BmgT120I	GGNCC	1 cut(s)	548
BmrFI	CCNGG	1 cut(s)	368
BplI	GAGNNNNNCTC	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse118I	RCCGGY	2 cut(s)	167, 215
Bse3DI	GCAATG	1 cut(s)	219
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	1 cut(s)	367
BseGI	GGATG	1 cut(s)	167
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	63
BseRI	GAGGAG	1 cut(s)	404
BseYI	CCCAGC	2 cut(s)	17, 187
Bsh1285I	CGRYCG	1 cut(s)	458
BshFI	GGCC	1 cut(s)	215
BsiEI	CGRYCG	1 cut(s)	458
BsiSI	CCGG	2 cut(s)	168, 216
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	62
BsnI	GGCC	1 cut(s)	215
Bsp1407I	TGTACA	1 cut(s)	129
Bsp143I	GATC	4 cut(s)	6, 87, 374, 462
BspANI	GGCC	1 cut(s)	215
BspCNI	CTCAG	1 cut(s)	64
BspMAI	CTGCAG	1 cut(s)	355
BsrDI	GCAATG	1 cut(s)	219
BsrFI	RCCGGY	2 cut(s)	167, 215
BsrGI	TGTACA	1 cut(s)	129
BssAI	RCCGGY	2 cut(s)	167, 215
BssECI	CCNNGG	1 cut(s)	367
BssMI	GATC	4 cut(s)	6, 87, 374, 462
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	3 cut(s)	28, 145, 250
BstAUI	TGTACA	1 cut(s)	129
BstC8I	GCNNGC	2 cut(s)	217, 543
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	167
BstH2I	RGCGCY	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	4 cut(s)	9, 90, 377, 465
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	4 cut(s)	6, 87, 374, 462
BstMCI	CGRYCG	1 cut(s)	458
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNI	CCWGG	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	366
BstSFI	CTRYAG	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	215
BtsCI	GGATG	1 cut(s)	167
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	2 cut(s)	141, 360
Cac8I	GCNNGC	2 cut(s)	217, 543
CfoI	GCGC	1 cut(s)	82
Cfr10I	RCCGGY	2 cut(s)	167, 215
Cfr13I	GGNCC	1 cut(s)	548
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	4 cut(s)	215, 271, 366, 541
CviKI_1	RGCY	4 cut(s)	215, 271, 366, 541
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	4 cut(s)	8, 89, 376, 464
DpnII	GATC	4 cut(s)	6, 87, 374, 462
Eco47I	GGWCC	1 cut(s)	548
Eco57I	CTGAAG	1 cut(s)	494
EcoRII	CCWGG	1 cut(s)	366
FaeI	CATG	1 cut(s)	25
FaiI	YATR	5 cut(s)	23, 32, 206, 348, 447
FalI	AAGNNNNNCTT	2 cut(s)	479, 511
FatI	CATG	1 cut(s)	21
FbaI	TGATCA	1 cut(s)	462
FokI	GGATG	1 cut(s)	174
GlaI	GCGC	1 cut(s)	81
GsaI	CCCAGC	2 cut(s)	21, 191
HaeII	RGCGCY	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	215
HapII	CCGG	2 cut(s)	168, 216
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	1 cut(s)	25
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	3 cut(s)	402, 430, 533
HpaII	CCGG	2 cut(s)	168, 216
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	2 cut(s)	132, 493
Hpy188I	TCNGA	2 cut(s)	87, 538
Hpy188III	TCNNGA	2 cut(s)	110, 378
Hpy8I	GTNNAC	2 cut(s)	132, 493
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	4 cut(s)	70, 322, 412, 481
HpyCH4III	ACNGT	3 cut(s)	28, 145, 250
HpyCH4IV	ACGT	1 cut(s)	565
HpyCH4V	TGCA	1 cut(s)	353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	1 cut(s)	72
HpySE526I	ACGT	1 cut(s)	565
Hsp92II	CATG	1 cut(s)	25
HspAI	GCGC	1 cut(s)	80
KroI	GCCGGC	1 cut(s)	215
KroNI	GCCGGC	1 cut(s)	217
Ksp22I	TGATCA	1 cut(s)	462
Kzo9I	GATC	4 cut(s)	6, 87, 374, 462
LmnI	GCTCC	1 cut(s)	538
MaeII	ACGT	1 cut(s)	565
MalI	GATC	4 cut(s)	8, 89, 376, 464
MboI	GATC	4 cut(s)	6, 87, 374, 462
MboII	GAAGA	3 cut(s)	384, 487, 490
MluCI	AATT	5 cut(s)	124, 259, 278, 309, 523
MnlI	CCTC	5 cut(s)	22, 205, 382, 385, 417
MroNI	GCCGGC	1 cut(s)	215
MseI	TTAA	1 cut(s)	509
MspI	CCGG	2 cut(s)	168, 216
MspR9I	CCNGG	1 cut(s)	368
MvaI	CCWGG	1 cut(s)	368
MwoI	GCNNNNNNNGC	1 cut(s)	221
NaeI	GCCGGC	1 cut(s)	217
NdeII	GATC	4 cut(s)	6, 87, 374, 462
NgoMIV	GCCGGC	1 cut(s)	215
NlaIII	CATG	1 cut(s)	25
PdiI	GCCGGC	1 cut(s)	217
PfeI	GAWTC	3 cut(s)	402, 430, 533
PsiI	TTATAA	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	366
PspFI	CCCAGC	2 cut(s)	17, 187
PspGI	CCWGG	1 cut(s)	366
PspPI	GGNCC	1 cut(s)	548
PstI	CTGCAG	1 cut(s)	355
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SaqAI	TTAA	1 cut(s)	509
Sau3AI	GATC	4 cut(s)	6, 87, 374, 462
Sau96I	GGNCC	1 cut(s)	548
ScrFI	CCNGG	1 cut(s)	368
SetI	ASST	6 cut(s)	14, 273, 474, 492, 543, 568
SfcI	CTRYAG	1 cut(s)	351
SinI	GGWCC	1 cut(s)	548
Sse9I	AATT	5 cut(s)	124, 259, 278, 309, 523
StyD4I	CCNGG	1 cut(s)	366
TaaI	ACNGT	3 cut(s)	28, 145, 250
TaiI	ACGT	1 cut(s)	568
TaqI	TCGA	2 cut(s)	54, 282
TaqII	GACCGA	1 cut(s)	444
TasI	AATT	5 cut(s)	124, 259, 278, 309, 523
TatI	WGTACW	1 cut(s)	129
TfiI	GAWTC	3 cut(s)	402, 430, 533
Tru1I	TTAA	1 cut(s)	509
Tru9I	TTAA	1 cut(s)	509
TscAI	CASTG	2 cut(s)	148, 360
TspDTI	ATGAA	5 cut(s)	116, 195, 221, 431, 536
TspRI	CASTG	2 cut(s)	148, 360
VpaK11BI	GGWCC	1 cut(s)	548
XapI	RAATTY	2 cut(s)	278, 523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.