Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001513

Physical Location & Seq

Genomic Coordinates Forward (+)

78943993 .. 78944683

Gene Structure 691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG558200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCCAGTCCTCTCTGAACCCAGAGACAATGCTATCCGCTCCCTTAAGGCGTTTCCGATGCTACAGAGCAGCAGAGCTATTCAATCACACTCTGGGTCCCCACTCGTTTCCGATTCGGATTCAAAAATGTCCACCACTTACCGACCCGAACAACTGTGGGTCCCCATCCTTCGCCACCCCTTTGCAAAAGCAGATGATTGTGCTGTGGAGCTGCTCAATTTTACCGAGCAAGTATTGGAATTGACCCAACCGAGCATGACAGTAATAAACAGACTTCTCTTTGCATTTGGTCAATGCAAAGAGACTGATAATGTAATTTTGATCTTTGCCCAGGTGAAAGATCGAAACTTTGCACCGGATTTGTACACATACAACACTGTTTTTGAGATATTGGGCCGGGCGGGTCGTACAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

138

Amino Acids

15.63

Weight (kDa)

6.72

Isoelectric Point (pI)

58.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11900
fragaria_vesca	FvH4_6g24020 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44670 FvH4_6g44670 FvH4_6g44670
malus_domestica	MD14G1065400.v1.1 MD17G1084400.v1.1
prunus_persica	Prupe.3G231200_v2.0.a1
pyrus_communis	pycom17g08150
rosa_chinensis	RchiOBHm_Chr1g0342741 RchiOBHm_Chr1g0342831 RchiOBHm_Chr2g0161831
rosa_laevigata	RLG00000021301 RLG00000029118 RLG00000029172 RLG00000029191
rosa_multiflora	Rmu_co8023038.1_g000001 Rmu_sc0001993.1_g000024 Rmu_sc0004502.1_g000002 Rmu_sc0011563.1_g000011
rosa_roxburghii	Rroxscaffold_2G00088520 Rroxscaffold_2G00088540 Rroxscaffold_2G00118030 Rroxscaffold_3G00231880 Rroxscaffold_4G00313190 Rroxscaffold_4G00313220 Rroxscaffold_7G00197130
rosa_rugosa	Rorug01G0146200.1 Rorug02G0492600
rosa_samantha	Rh1AG162400 Rh1AG162900 Rh1AG163800 Rh1AG164600 Rh1BG129700 Rh1CG152900 Rh1CG153400 Rh2AG558200 Rh2AG558300 Rh2CG541900 Rh2CG542300 Rh2DG581000 Rh2DG581900 Rh3CG249700
rosa_wichuraiana	Rw1G013300 Rw1G013340 Rw1G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	39
AciI	CCGC	2 cut(s)	37, 401
AfaI	GTAC	2 cut(s)	365, 409
AflII	CTTAAG	1 cut(s)	44
AgsI	TTSAA	2 cut(s)	83, 123
AjnI	CCWGG	1 cut(s)	330
AluBI	AGCT	2 cut(s)	77, 211
AluI	AGCT	2 cut(s)	77, 211
Alw26I	GTCTC	2 cut(s)	18, 296
AoxI	GGCC	1 cut(s)	394
ApeKI	GCWGC	2 cut(s)	69, 211
AspS9I	GGNCC	3 cut(s)	96, 160, 394
AsuC2I	CCSGG	1 cut(s)	398
AsuHPI	GGTGA	1 cut(s)	346
AvaII	GGWCC	2 cut(s)	96, 160
BbvI	GCAGC	2 cut(s)	81, 198
BccI	CCATC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	332
BcnI	CCSGG	1 cut(s)	398
BcoDI	GTCTC	2 cut(s)	18, 296
BfmI	CTRYAG	1 cut(s)	62
BfrI	CTTAAG	1 cut(s)	44
BisI	GCNGC	2 cut(s)	70, 212
BlsI	GCNGC	2 cut(s)	71, 213
Bme1390I	CCNGG	2 cut(s)	332, 398
Bme18I	GGWCC	2 cut(s)	96, 160
BmgT120I	GGNCC	3 cut(s)	96, 160, 394
BmiI	GGNNCC	4 cut(s)	97, 98, 161, 162
BmrFI	CCNGG	2 cut(s)	332, 398
BmsI	GCATC	1 cut(s)	48
BpuMI	CCSGG	1 cut(s)	398
BsaJI	CCNNGG	1 cut(s)	330
BsaWI	WCCGGW	1 cut(s)	355
Bse1I	ACTGG	1 cut(s)	5
BseBI	CCWGG	1 cut(s)	332
BseDI	CCNNGG	1 cut(s)	330
BseGI	GGATG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	5
BseXI	GCAGC	2 cut(s)	81, 198
BshFI	GGCC	1 cut(s)	396
BsiSI	CCGG	2 cut(s)	356, 397
BslFI	GGGAC	2 cut(s)	82, 146
BsmAI	GTCTC	2 cut(s)	18, 296
BsmFI	GGGAC	2 cut(s)	82, 146
BsnI	GGCC	1 cut(s)	396
Bsp1407I	TGTACA	1 cut(s)	363
Bsp143I	GATC	2 cut(s)	321, 340
BspACI	CCGC	2 cut(s)	37, 401
BspANI	GGCC	1 cut(s)	396
BspLI	GGNNCC	4 cut(s)	97, 98, 161, 162
BspTI	CTTAAG	1 cut(s)	44
BsrBI	CCGCTC	1 cut(s)	39
BsrGI	TGTACA	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	5
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	2 cut(s)	321, 340
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	3 cut(s)	156, 262, 379
BstAFI	CTTAAG	1 cut(s)	44
BstAUI	TGTACA	1 cut(s)	363
BstF5I	GGATG	1 cut(s)	165
BstKTI	GATC	2 cut(s)	324, 343
BstMAI	GTCTC	2 cut(s)	18, 296
BstMBI	GATC	2 cut(s)	321, 340
BstNI	CCWGG	1 cut(s)	332
BstSCI	CCNGG	2 cut(s)	330, 396
BstSFI	CTRYAG	1 cut(s)	62
BstV1I	GCAGC	2 cut(s)	81, 198
BsuRI	GGCC	1 cut(s)	396
BtsCI	GGATG	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	375
Cfr13I	GGNCC	3 cut(s)	96, 160, 394
Csp6I	GTAC	2 cut(s)	364, 408
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	3 cut(s)	77, 211, 396
CviKI_1	RGCY	3 cut(s)	77, 211, 396
CviQI	GTAC	2 cut(s)	364, 408
DpnI	GATC	2 cut(s)	323, 342
DpnII	GATC	2 cut(s)	321, 340
Eco47I	GGWCC	2 cut(s)	96, 160
EcoO109I	RGGNCCY	2 cut(s)	96, 160
EcoRII	CCWGG	1 cut(s)	330
FaeI	CATG	1 cut(s)	259
FaiI	YATR	2 cut(s)	257, 370
FaqI	GGGAC	2 cut(s)	82, 146
FatI	CATG	1 cut(s)	255
FauI	CCCGC	1 cut(s)	394
Fnu4HI	GCNGC	2 cut(s)	70, 212
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	2 cut(s)	70, 212
GluI	GCNGC	2 cut(s)	70, 212
HaeIII	GGCC	1 cut(s)	396
HapII	CCGG	2 cut(s)	356, 397
Hin1II	CATG	1 cut(s)	259
HinfI	GANTC	2 cut(s)	113, 119
HpaII	CCGG	2 cut(s)	356, 397
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	2 cut(s)	132, 366
Hpy188I	TCNGA	4 cut(s)	16, 57, 112, 118
Hpy8I	GTNNAC	2 cut(s)	132, 366
HpyAV	CCTTC	1 cut(s)	179
HpyCH4III	ACNGT	3 cut(s)	156, 262, 379
HpyCH4V	TGCA	4 cut(s)	185, 284, 297, 353
Hsp92II	CATG	1 cut(s)	259
KflI	GGGWCCC	2 cut(s)	96, 160
Kzo9I	GATC	2 cut(s)	321, 340
LmnI	GCTCC	2 cut(s)	44, 208
LpnPI	CCDG	7 cut(s)	18, 34, 78, 317, 344, 369, 410
Lsp1109I	GCAGC	2 cut(s)	81, 198
LweI	GCATC	1 cut(s)	48
MalI	GATC	2 cut(s)	323, 342
MbiI	CCGCTC	1 cut(s)	39
MboI	GATC	2 cut(s)	321, 340
MluCI	AATT	3 cut(s)	217, 239, 315
MnlI	CCTC	1 cut(s)	20
MseI	TTAA	1 cut(s)	45
MspCI	CTTAAG	1 cut(s)	44
MspI	CCGG	2 cut(s)	356, 397
MspR9I	CCNGG	2 cut(s)	332, 398
MvaI	CCWGG	1 cut(s)	332
NciI	CCSGG	1 cut(s)	398
NdeII	GATC	2 cut(s)	321, 340
NlaIII	CATG	1 cut(s)	259
NlaIV	GGNNCC	4 cut(s)	97, 98, 161, 162
PfeI	GAWTC	2 cut(s)	113, 119
PkrI	GCNGC	2 cut(s)	71, 213
PpuMI	RGGWCCY	2 cut(s)	96, 160
Psp5II	RGGWCCY	2 cut(s)	96, 160
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
PspN4I	GGNNCC	4 cut(s)	97, 98, 161, 162
PspPI	GGNCC	3 cut(s)	96, 160, 394
PspPPI	RGGWCCY	2 cut(s)	96, 160
RsaI	GTAC	2 cut(s)	365, 409
RsaNI	GTAC	2 cut(s)	364, 408
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	2 cut(s)	70, 212
Sau3AI	GATC	2 cut(s)	321, 340
Sau96I	GGNCC	3 cut(s)	96, 160, 394
ScrFI	CCNGG	2 cut(s)	332, 398
SetI	ASST	4 cut(s)	79, 213, 336, 416
SfaNI	GCATC	1 cut(s)	48
SfcI	CTRYAG	1 cut(s)	62
SinI	GGWCC	2 cut(s)	96, 160
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	3 cut(s)	217, 239, 315
SsiI	CCGC	2 cut(s)	37, 401
StyD4I	CCNGG	2 cut(s)	330, 396
TaaI	ACNGT	3 cut(s)	156, 262, 379
TaqI	TCGA	1 cut(s)	343
TasI	AATT	3 cut(s)	217, 239, 315
TatI	WGTACW	1 cut(s)	363
TfiI	GAWTC	2 cut(s)	113, 119
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	1 cut(s)	382
TseI	GCWGC	2 cut(s)	69, 211
TspRI	CASTG	1 cut(s)	382
Vha464I	CTTAAG	1 cut(s)	44
VpaK11BI	GGWCC	2 cut(s)	96, 160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.