Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001513

Physical Location & Seq

Genomic Coordinates Forward (+)

34397029 .. 34401083

Gene Structure 4055 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g44670.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGAGATATTGGGCCGGGCGGGTCGGACCGGTGAGACGCTGGGGCTGTTTAGGGAGATGAAGGAAGCTGGGATTGACCCGGATTTGGTTTCTTACAATACAGTGATAAACCATGTGAGGAAGTTTGGGGAAGTTGAAATGTGCTTGTTGTATTTTAAGGAAATGTGTGAAATGGGGGTGCAGCCTGATTTGCTGACTTATACTGCGGTCATTGATGGGTTGGGGAGGTCAGGGAATATTGAGGAGTCATTGAGGTTGTTTGATCAGATGAAGGAGAGGCGGATTCGGCCTTCGGTGTATCTGTATAGGGCAGTGATCAGTAATTTGAAGAAGTTGGGGAAGGTGGAGATGGCAGTGAGTTTGATGGAGGAGATGAATTCATGTGCTTCAGGTGTTTCTAATCCGAGATGGGATAAACGCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

142

Amino Acids

16.1

Weight (kDa)

7.68

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	3 - 37	8.5e-07	PPR repeat family
PPR_long	PF17177	15 - 128	2.3e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	27 - 75	8.4e-13	PPR repeat family
PPR_3	PF13812	52 - 107	3.7e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	58 - 91	6.9e-10	PPR repeat
PPR_2	PF13041	62 - 109	6.8e-11	PPR repeat family
PPR	PF01535	66 - 95	1.4e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11900
fragaria_vesca	FvH4_6g24020 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44670 FvH4_6g44670 FvH4_6g44670
malus_domestica	MD14G1065400.v1.1 MD17G1084400.v1.1
prunus_persica	Prupe.3G231200_v2.0.a1
pyrus_communis	pycom17g08150
rosa_chinensis	RchiOBHm_Chr1g0342741 RchiOBHm_Chr1g0342831 RchiOBHm_Chr2g0161831
rosa_laevigata	RLG00000021301 RLG00000029118 RLG00000029172 RLG00000029191
rosa_multiflora	Rmu_co8023038.1_g000001 Rmu_sc0001993.1_g000024 Rmu_sc0004502.1_g000002 Rmu_sc0011563.1_g000011
rosa_roxburghii	Rroxscaffold_2G00088520 Rroxscaffold_2G00088540 Rroxscaffold_2G00118030 Rroxscaffold_3G00231880 Rroxscaffold_4G00313190 Rroxscaffold_4G00313220 Rroxscaffold_7G00197130
rosa_rugosa	Rorug01G0146200.1 Rorug02G0492600
rosa_samantha	Rh1AG162400 Rh1AG162900 Rh1AG163800 Rh1AG164600 Rh1BG129700 Rh1CG152900 Rh1CG153400 Rh2AG558200 Rh2AG558300 Rh2CG541900 Rh2CG542300 Rh2DG581000 Rh2DG581900 Rh3CG249700
rosa_wichuraiana	Rw1G013300 Rw1G013340 Rw1G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	20, 206, 280
AcsI	RAATTY	1 cut(s)	376
AcuI	CTGAAG	1 cut(s)	372
AfiI	CCNNNNNNNGG	1 cut(s)	85
AgeI	ACCGGT	1 cut(s)	29
AgsI	TTSAA	2 cut(s)	137, 328
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
Alw26I	GTCTC	1 cut(s)	29
AoxI	GGCC	2 cut(s)	13, 287
ApeKI	GCWGC	1 cut(s)	181
ApoI	RAATTY	1 cut(s)	376
AsiGI	ACCGGT	1 cut(s)	29
AspS9I	GGNCC	2 cut(s)	13, 27
AsuC2I	CCSGG	2 cut(s)	17, 80
AsuHPI	GGTGA	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	193
BccI	CCATC	4 cut(s)	209, 343, 358, 402
BclI	TGATCA	2 cut(s)	262, 315
BcnI	CCSGG	2 cut(s)	17, 80
BcoDI	GTCTC	1 cut(s)	29
BisI	GCNGC	1 cut(s)	182
BlsI	GCNGC	1 cut(s)	183
Bme1390I	CCNGG	2 cut(s)	17, 80
Bme18I	GGWCC	1 cut(s)	27
BmgT120I	GGNCC	2 cut(s)	13, 27
BmrFI	CCNGG	2 cut(s)	17, 80
BpuMI	CCSGG	2 cut(s)	17, 80
BsaWI	WCCGGW	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse118I	RCCGGY	2 cut(s)	29, 420
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseRI	GAGGAG	2 cut(s)	257, 383
BseXI	GCAGC	1 cut(s)	193
BseYI	CCCAGC	2 cut(s)	40, 68
BsgI	GTGCAG	1 cut(s)	200
BshFI	GGCC	2 cut(s)	15, 289
BshTI	ACCGGT	1 cut(s)	29
BsiSI	CCGG	4 cut(s)	16, 30, 80, 421
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	29
BsmBI	CGTCTC	1 cut(s)	29
BsnI	GGCC	2 cut(s)	15, 289
Bsp143I	GATC	2 cut(s)	262, 315
BspACI	CCGC	3 cut(s)	20, 206, 280
BspANI	GGCC	2 cut(s)	15, 289
BsrFI	RCCGGY	2 cut(s)	29, 420
BssAI	RCCGGY	2 cut(s)	29, 420
BssMI	GATC	2 cut(s)	262, 315
Bst4CI	ACNGT	1 cut(s)	103
BstKTI	GATC	2 cut(s)	265, 318
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	2 cut(s)	262, 315
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 286
BstSCI	CCNGG	2 cut(s)	15, 78
BstV1I	GCAGC	1 cut(s)	193
BsuRI	GGCC	2 cut(s)	15, 289
BtsI	GCAGTG	2 cut(s)	318, 360
BtsIMutI	CAGTG	3 cut(s)	108, 318, 360
Cfr10I	RCCGGY	2 cut(s)	29, 420
Cfr13I	GGNCC	2 cut(s)	13, 27
CpoI	CGGWCCG	1 cut(s)	27
CseI	GACGC	1 cut(s)	46
CspAI	ACCGGT	1 cut(s)	29
CspI	CGGWCCG	1 cut(s)	27
CviAII	CATG	2 cut(s)	113, 381
CviJI	RGCY	5 cut(s)	15, 46, 68, 184, 289
CviKI_1	RGCY	5 cut(s)	15, 46, 68, 184, 289
DpnI	GATC	2 cut(s)	264, 317
DpnII	GATC	2 cut(s)	262, 315
EciI	GGCGGA	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	372
EcoRI	GAATTC	1 cut(s)	376
Esp3I	CGTCTC	1 cut(s)	29
FaeI	CATG	2 cut(s)	116, 384
FaiI	YATR	4 cut(s)	114, 201, 306, 382
FatI	CATG	2 cut(s)	112, 380
FauI	CCCGC	1 cut(s)	13
FbaI	TGATCA	2 cut(s)	262, 315
Fnu4HI	GCNGC	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	182
GluI	GCNGC	1 cut(s)	182
GsaI	CCCAGC	2 cut(s)	44, 72
HaeIII	GGCC	2 cut(s)	15, 289
HapII	CCGG	4 cut(s)	16, 30, 80, 421
HgaI	GACGC	1 cut(s)	46
Hin1II	CATG	2 cut(s)	116, 384
HinfI	GANTC	2 cut(s)	245, 283
HpaII	CCGG	4 cut(s)	16, 30, 80, 421
HphI	GGTGA	1 cut(s)	44
Hpy188I	TCNGA	3 cut(s)	27, 267, 405
HpyAV	CCTTC	4 cut(s)	55, 265, 300, 334
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4V	TGCA	1 cut(s)	181
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 286
Hsp92II	CATG	2 cut(s)	116, 384
Ksp22I	TGATCA	2 cut(s)	262, 315
Kzo9I	GATC	2 cut(s)	262, 315
LpnPI	CCDG	8 cut(s)	26, 29, 43, 54, 93, 198, 216, 375
Lsp1109I	GCAGC	1 cut(s)	193
MalI	GATC	2 cut(s)	264, 317
MboI	GATC	2 cut(s)	262, 315
MboII	GAAGA	1 cut(s)	340
MluCI	AATT	2 cut(s)	322, 376
MlyI	GAGTC	1 cut(s)	254
MmeI	TCCRAC	1 cut(s)	5
MnlI	CCTC	6 cut(s)	111, 219, 235, 246, 270, 361
MseI	TTAA	1 cut(s)	156
MspI	CCGG	4 cut(s)	16, 30, 80, 421
MspR9I	CCNGG	2 cut(s)	17, 80
MwoI	GCNNNNNNNGC	2 cut(s)	190, 286
NciI	CCSGG	2 cut(s)	17, 80
NdeII	GATC	2 cut(s)	262, 315
NlaIII	CATG	2 cut(s)	116, 384
PfeI	GAWTC	1 cut(s)	283
PinAI	ACCGGT	1 cut(s)	29
PkrI	GCNGC	1 cut(s)	183
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PspFI	CCCAGC	2 cut(s)	40, 68
PspPI	GGNCC	2 cut(s)	13, 27
Rsr2I	CGGWCCG	1 cut(s)	27
RsrII	CGGWCCG	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	1 cut(s)	182
Sau3AI	GATC	2 cut(s)	262, 315
Sau96I	GGNCC	2 cut(s)	13, 27
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	2 cut(s)	17, 80
SetI	ASST	5 cut(s)	70, 230, 257, 345, 394
SinI	GGWCC	1 cut(s)	27
Sse9I	AATT	2 cut(s)	322, 376
SsiI	CCGC	3 cut(s)	20, 206, 280
SspI	AATATT	1 cut(s)	238
StyD4I	CCNGG	2 cut(s)	15, 78
TaaI	ACNGT	1 cut(s)	103
TasI	AATT	2 cut(s)	322, 376
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	3 cut(s)	108, 318, 360
TseI	GCWGC	1 cut(s)	181
TspDTI	ATGAA	4 cut(s)	74, 284, 369, 389
TspRI	CASTG	3 cut(s)	108, 318, 360
VpaK11BI	GGWCC	1 cut(s)	27
XapI	RAATTY	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.