Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001513

Physical Location & Seq

Genomic Coordinates Forward (+)

6947843 .. 6948910

Gene Structure 1068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1084400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGCTATCTTCTTCCTCAAGGTGCTTGCGATGCTACATAGCAGCAGCAGCAGCATCAGACGTACGCGCTCTCACTTTCCTCCCCAACTCCGCTCCAATTCGGCGCCCGAATCACAACCCCCCGCCATTCTCCACCTCAGTCGATCCGCCATTGTTTTCCACCGCAACCAGATTCATCAGCAGCTCTCGGACCTCTTCTTCCCCAGAGCAAGAAGCTACCCTGAATCAAATTCTTTCCTCCATACAAAACGCCGCCACGTTACTCGAATCCTTGTACGAAAACCGCCTTTTCCTCAGCCCCAAATCGTTCAACAGCGTGCTGGTTGCGGCCGCCGCCGAAAGCGGCGACCTTTCCCTCCTATCTCAGCTTCTTCAGGTCGCAATCGCGTCTTCTCAACCTTTAAATTCTGCTTGTTTTCTCACTGTCGCCAAAGCTTTCGCAAAGTCGGATGATTGCGCGGAGCTGCTCAGATTAACCAAGCAGGTAATGGAGCTCACCGCTCCCAGCATGACAGTCATAAACAGGATTCTCTTTGCTTTTGGCGAATGCGGAGAGACTGAGAAGGCGCTCCTGATCTTTTCCCAGATGAAAACTCTTGCTTTCGTGCCCGATTTGTACACCCACAACACTGTTTTAGAGATTTTAGGATGTGCCGGTAGGATTGATGAATTGGTGGGTCAGTTCGGGGTTATGAAAGAGGCCGGCATTGTCCCTGATGTGGTTTCTTACAATACTGTGTTGAACAATTTGAGGAAGCTTGGGAAATTCGATGTGTGTTTGTTTTACTTCAAGGAAATGGGTGAAAATGGAGTGGAGGCAGATTTGCTTACTTATACTGCAGTGATTGAGAGCCTGGGAAGATCAGGAAATGTTGAGGAGGCATTGAGATTCTTCGATGAGATGAAGGCGAGGGAGATTCGTCCTTCCCTGTATGTTTATCGGTCGCTGATCACGAACCTGAAGAAGATGGGGAAGGTGGACTTGGCATTGAGTTTAACGGAGGAGATGAATTCGTGTGATTCGGAGCTTGCTGGTCCAATGGATTTCAAACGTAATAAACGGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

356

Amino Acids

38.93

Weight (kDa)

5.67

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	238 - 285	3.1e-09	PPR repeat family
PPR_3	PF13812	263 - 318	8.1e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	269 - 302	7.5e-09	PPR repeat
PPR_2	PF13041	274 - 320	7e-11	PPR repeat family
PPR	PF01535	277 - 304	2.2e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11900
fragaria_vesca	FvH4_6g24020 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44670 FvH4_6g44670 FvH4_6g44670
malus_domestica	MD14G1065400.v1.1 MD17G1084400.v1.1
prunus_persica	Prupe.3G231200_v2.0.a1
pyrus_communis	pycom17g08150
rosa_chinensis	RchiOBHm_Chr1g0342741 RchiOBHm_Chr1g0342831 RchiOBHm_Chr2g0161831
rosa_laevigata	RLG00000021301 RLG00000029118 RLG00000029172 RLG00000029191
rosa_multiflora	Rmu_co8023038.1_g000001 Rmu_sc0001993.1_g000024 Rmu_sc0004502.1_g000002 Rmu_sc0011563.1_g000011
rosa_roxburghii	Rroxscaffold_2G00088520 Rroxscaffold_2G00088540 Rroxscaffold_2G00118030 Rroxscaffold_3G00231880 Rroxscaffold_4G00313190 Rroxscaffold_4G00313220 Rroxscaffold_7G00197130
rosa_rugosa	Rorug01G0146200.1 Rorug02G0492600
rosa_samantha	Rh1AG162400 Rh1AG162900 Rh1AG163800 Rh1AG164600 Rh1BG129700 Rh1CG152900 Rh1CG153400 Rh2AG558200 Rh2AG558300 Rh2CG541900 Rh2CG542300 Rh2DG581000 Rh2DG581900 Rh3CG249700
rosa_wichuraiana	Rw1G013300 Rw1G013340 Rw1G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	472
AccB1I	GGYRCC	1 cut(s)	102
AccBSI	CCGCTC	2 cut(s)	92, 500
AccII	CGCG	3 cut(s)	66, 386, 458
AclWI	GGATC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	327
AcsI	RAATTY	4 cut(s)	228, 403, 764, 1009
AcuI	CTGAAG	2 cut(s)	356, 980
AcyI	GRCGYC	1 cut(s)	103
AfaI	GTAC	3 cut(s)	63, 275, 617
AfiI	CCNNNNNNNGG	1 cut(s)	718
AgsI	TTSAA	4 cut(s)	310, 742, 790, 1048
AjnI	CCWGG	1 cut(s)	852
AjuI	GAANNNNNNNTTGG	2 cut(s)	965, 997
AluBI	AGCT	8 cut(s)	183, 215, 367, 434, 463, 493, 757, 1027
AluI	AGCT	8 cut(s)	183, 215, 367, 434, 463, 493, 757, 1027
Alw21I	GWGCWC	1 cut(s)	495
Alw26I	GTCTC	1 cut(s)	548
AlwI	GGATC	1 cut(s)	137
AoxI	GGCC	2 cut(s)	327, 699
ApeKI	GCWGC	6 cut(s)	41, 44, 47, 50, 180, 463
ApoI	RAATTY	4 cut(s)	228, 403, 764, 1009
AspLEI	GCGC	4 cut(s)	68, 105, 458, 568
AspS9I	GGNCC	2 cut(s)	189, 1034
AsuHPI	GGTGA	2 cut(s)	487, 812
AvaII	GGWCC	2 cut(s)	189, 1034
BaeGI	GKGCMC	1 cut(s)	609
BanI	GGYRCC	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	495
BbsI	GAAGAC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	495
BbvCI	CCTCAGC	1 cut(s)	293
BbvI	GCAGC	6 cut(s)	53, 56, 59, 62, 192, 450
BccI	CCATC	1 cut(s)	961
BciT130I	CCWGG	1 cut(s)	854
BclI	TGATCA	1 cut(s)	948
BcoDI	GTCTC	1 cut(s)	548
BfmI	CTRYAG	1 cut(s)	837
BfoI	RGCGCY	2 cut(s)	106, 569
BfuAI	ACCTGC	1 cut(s)	472
Bme1390I	CCNGG	1 cut(s)	854
Bme18I	GGWCC	2 cut(s)	189, 1034
BmgT120I	GGNCC	2 cut(s)	189, 1034
BmiI	GGNNCC	1 cut(s)	104
BmrFI	CCNGG	1 cut(s)	854
BmsI	GCATC	2 cut(s)	20, 62
BpiI	GAAGAC	1 cut(s)	381
Bpu10I	CCTNAGC	1 cut(s)	293
BsaHI	GRCGYC	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	853
Bsc4I	CCNNNNNNNGG	1 cut(s)	718
Bse118I	RCCGGY	2 cut(s)	653, 701
BseBI	CCWGG	1 cut(s)	854
BseDI	CCNNGG	1 cut(s)	853
BseGI	GGATG	2 cut(s)	454, 653
BseLI	CCNNNNNNNGG	1 cut(s)	718
BseMII	CTCAG	5 cut(s)	150, 307, 377, 481, 549
BseRI	GAGGAG	2 cut(s)	890, 1016
BseSI	GKGCMC	1 cut(s)	609
BseX3I	CGGCCG	1 cut(s)	327
BseXI	GCAGC	6 cut(s)	53, 56, 59, 62, 192, 450
BseYI	CCCAGC	1 cut(s)	503
Bsh1236I	CGCG	3 cut(s)	66, 386, 458
Bsh1285I	CGRYCG	2 cut(s)	330, 944
BshFI	GGCC	2 cut(s)	329, 701
BshNI	GGYRCC	1 cut(s)	102
BsiEI	CGRYCG	2 cut(s)	330, 944
BsiHKAI	GWGCWC	1 cut(s)	495
BsiSI	CCGG	2 cut(s)	654, 702
BsiWI	CGTACG	1 cut(s)	61
BslFI	GGGAC	1 cut(s)	695
BslI	CCNNNNNNNGG	1 cut(s)	718
BsmAI	GTCTC	1 cut(s)	548
BsmFI	GGGAC	1 cut(s)	695
BsmI	GAATGC	1 cut(s)	551
BsnI	GGCC	2 cut(s)	329, 701
Bsp1286I	GDGCHC	2 cut(s)	495, 609
Bsp1407I	TGTACA	1 cut(s)	615
Bsp143I	GATC	4 cut(s)	142, 573, 860, 948
BspANI	GGCC	2 cut(s)	329, 701
BspCNI	CTCAG	5 cut(s)	149, 306, 376, 480, 550
BspFNI	CGCG	3 cut(s)	66, 386, 458
BspLI	GGNNCC	1 cut(s)	104
BspMAI	CTGCAG	1 cut(s)	841
BspMI	ACCTGC	1 cut(s)	472
BspPI	GGATC	1 cut(s)	137
BspT107I	GGYRCC	1 cut(s)	102
BsrBI	CCGCTC	2 cut(s)	92, 500
BsrFI	RCCGGY	2 cut(s)	653, 701
BsrGI	TGTACA	1 cut(s)	615
BssAI	RCCGGY	2 cut(s)	653, 701
BssECI	CCNNGG	1 cut(s)	853
BssMI	GATC	4 cut(s)	142, 573, 860, 948
BssNI	GRCGYC	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	854
Bst4CI	ACNGT	5 cut(s)	424, 514, 631, 736, 1062
Bst6I	CTCTTC	1 cut(s)	199
BstACI	GRCGYC	1 cut(s)	103
BstAUI	TGTACA	1 cut(s)	615
BstC8I	GCNNGC	4 cut(s)	26, 317, 703, 1029
BstDEI	CTNAG	5 cut(s)	136, 293, 363, 467, 558
BstF5I	GGATG	2 cut(s)	454, 653
BstFNI	CGCG	3 cut(s)	66, 386, 458
BstH2I	RGCGCY	2 cut(s)	106, 569
BstHHI	GCGC	4 cut(s)	68, 105, 458, 568
BstKTI	GATC	4 cut(s)	145, 576, 863, 951
BstMAI	GTCTC	1 cut(s)	548
BstMBI	GATC	4 cut(s)	142, 573, 860, 948
BstMCI	CGRYCG	2 cut(s)	330, 944
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 47, 50, 332
BstNI	CCWGG	1 cut(s)	854
BstSCI	CCNGG	1 cut(s)	852
BstSFI	CTRYAG	1 cut(s)	837
BstSLI	GKGCMC	1 cut(s)	609
BstUI	CGCG	3 cut(s)	66, 386, 458
BstV1I	GCAGC	6 cut(s)	53, 56, 59, 62, 192, 450
BstV2I	GAAGAC	1 cut(s)	381
BstZI	CGGCCG	1 cut(s)	327
BsuRI	GGCC	2 cut(s)	329, 701
BtgZI	GCGATG	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	454, 653
BtsI	GCAGTG	1 cut(s)	846
BtsIMutI	CAGTG	3 cut(s)	420, 627, 846
BveI	ACCTGC	1 cut(s)	472
Cac8I	GCNNGC	4 cut(s)	26, 317, 703, 1029
CciNI	GCGGCCGC	1 cut(s)	327
CfoI	GCGC	4 cut(s)	68, 105, 458, 568
Cfr10I	RCCGGY	2 cut(s)	653, 701
Cfr13I	GGNCC	2 cut(s)	189, 1034
CseI	GACGC	1 cut(s)	375
Csp6I	GTAC	3 cut(s)	62, 274, 616
CviAII	CATG	1 cut(s)	508
CviQI	GTAC	3 cut(s)	62, 274, 616
DdeI	CTNAG	5 cut(s)	136, 293, 363, 467, 558
DinI	GGCGCC	1 cut(s)	104
DpnI	GATC	4 cut(s)	144, 575, 862, 950
DpnII	GATC	4 cut(s)	142, 573, 860, 948
DraI	TTTAAA	1 cut(s)	402
EaeI	YGGCCR	1 cut(s)	327
EagI	CGGCCG	1 cut(s)	327
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
EciI	GGCGGA	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	493
EclXI	CGGCCG	1 cut(s)	327
Eco24I	GRGCYC	1 cut(s)	495
Eco47I	GGWCC	2 cut(s)	189, 1034
Eco52I	CGGCCG	1 cut(s)	327
Eco53kI	GAGCTC	1 cut(s)	493
Eco57I	CTGAAG	2 cut(s)	356, 980
EcoICRI	GAGCTC	1 cut(s)	493
EcoRI	GAATTC	1 cut(s)	1009
EcoRII	CCWGG	1 cut(s)	852
EcoT38I	GRGCYC	1 cut(s)	495
EgeI	GGCGCC	1 cut(s)	104
EheI	GGCGCC	1 cut(s)	104
FaeI	CATG	1 cut(s)	511
FaiI	YATR	7 cut(s)	38, 242, 509, 518, 692, 834, 933
FalI	AAGNNNNNCTT	2 cut(s)	965, 997
FaqI	GGGAC	1 cut(s)	695
FatI	CATG	1 cut(s)	507
FauI	CCCGC	1 cut(s)	129
FbaI	TGATCA	1 cut(s)	948
FokI	GGATG	2 cut(s)	461, 660
FriOI	GRGCYC	1 cut(s)	495
GlaI	GCGC	4 cut(s)	67, 104, 457, 567
GsaI	CCCAGC	1 cut(s)	507
HaeII	RGCGCY	2 cut(s)	106, 569
HaeIII	GGCC	2 cut(s)	329, 701
HapII	CCGG	2 cut(s)	654, 702
HgaI	GACGC	1 cut(s)	375
HhaI	GCGC	4 cut(s)	68, 105, 458, 568
Hin1I	GRCGYC	1 cut(s)	103
Hin1II	CATG	1 cut(s)	511
Hin6I	GCGC	4 cut(s)	66, 103, 456, 566
HinP1I	GCGC	4 cut(s)	66, 103, 456, 566
HindIII	AAGCTT	2 cut(s)	432, 755
HinfI	GANTC	8 cut(s)	109, 171, 223, 266, 526, 888, 916, 1019
HpaII	CCGG	2 cut(s)	654, 702
HphI	GGTGA	2 cut(s)	487, 812
Hpy166II	GTNNAC	2 cut(s)	618, 979
Hpy188I	TCNGA	5 cut(s)	58, 189, 448, 470, 1024
Hpy188III	TCNNGA	3 cut(s)	571, 864, 952
Hpy8I	GTNNAC	2 cut(s)	618, 979
HpyAV	CCTTC	4 cut(s)	556, 898, 933, 967
HpyCH4III	ACNGT	5 cut(s)	424, 514, 631, 736, 1062
HpyCH4IV	ACGT	3 cut(s)	60, 257, 1051
HpyCH4V	TGCA	1 cut(s)	839
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 47, 50, 332
HpyF3I	CTNAG	5 cut(s)	136, 293, 363, 467, 558
HpySE526I	ACGT	3 cut(s)	60, 257, 1051
Hsp92I	GRCGYC	1 cut(s)	103
Hsp92II	CATG	1 cut(s)	511
HspAI	GCGC	4 cut(s)	66, 103, 456, 566
KasI	GGCGCC	1 cut(s)	102
KroI	GCCGGC	1 cut(s)	701
KroNI	GCCGGC	1 cut(s)	703
Ksp22I	TGATCA	1 cut(s)	948
Kzo9I	GATC	4 cut(s)	142, 573, 860, 948
LmnI	GCTCC	6 cut(s)	97, 460, 490, 505, 573, 1024
Lsp1109I	GCAGC	6 cut(s)	53, 56, 59, 62, 192, 450
LweI	GCATC	2 cut(s)	20, 62
MaeII	ACGT	3 cut(s)	60, 257, 1051
MaeIII	GTNAC	1 cut(s)	258
MalI	GATC	4 cut(s)	144, 575, 862, 950
MbiI	CCGCTC	2 cut(s)	92, 500
MboI	GATC	4 cut(s)	142, 573, 860, 948
MboII	GAAGA	9 cut(s)	3, 186, 189, 362, 381, 870, 883, 973, 976
MhlI	GDGCHC	2 cut(s)	495, 609
MluCI	AATT	7 cut(s)	96, 228, 403, 668, 745, 764, 1009
Mly113I	GGCGCC	1 cut(s)	103
MmeI	TCCRAC	1 cut(s)	426
MroNI	GCCGGC	1 cut(s)	701
MseI	TTAA	3 cut(s)	401, 473, 995
MspI	CCGG	2 cut(s)	654, 702
MspR9I	CCNGG	1 cut(s)	854
Mva1269I	GAATGC	1 cut(s)	551
MvaI	CCWGG	1 cut(s)	854
MvnI	CGCG	3 cut(s)	66, 386, 458
MwoI	GCNNNNNNNGC	4 cut(s)	30, 47, 50, 332
NaeI	GCCGGC	1 cut(s)	703
NarI	GGCGCC	1 cut(s)	103
NdeII	GATC	4 cut(s)	142, 573, 860, 948
NgoMIV	GCCGGC	1 cut(s)	701
NlaIII	CATG	1 cut(s)	511
NlaIV	GGNNCC	1 cut(s)	104
NotI	GCGGCCGC	1 cut(s)	327
PcsI	WCGNNNNNNNCGW	1 cut(s)	950
PctI	GAATGC	1 cut(s)	551
PdiI	GCCGGC	1 cut(s)	703
PfeI	GAWTC	8 cut(s)	109, 171, 223, 266, 526, 888, 916, 1019
Pfl23II	CGTACG	1 cut(s)	61
PluTI	GGCGCC	1 cut(s)	106
Psp124BI	GAGCTC	1 cut(s)	495
Psp6I	CCWGG	1 cut(s)	852
PspFI	CCCAGC	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	852
PspLI	CGTACG	1 cut(s)	61
PspN4I	GGNNCC	1 cut(s)	104
PspPI	GGNCC	2 cut(s)	189, 1034
PstI	CTGCAG	1 cut(s)	841
RsaI	GTAC	3 cut(s)	63, 275, 617
RsaNI	GTAC	3 cut(s)	62, 274, 616
SacI	GAGCTC	1 cut(s)	495
SaqAI	TTAA	3 cut(s)	401, 473, 995
Sau3AI	GATC	4 cut(s)	142, 573, 860, 948
Sau96I	GGNCC	2 cut(s)	189, 1034
ScrFI	CCNGG	1 cut(s)	854
SduI	GDGCHC	2 cut(s)	495, 609
SfaNI	GCATC	2 cut(s)	20, 62
SfcI	CTRYAG	1 cut(s)	837
SfoI	GGCGCC	1 cut(s)	104
SinI	GGWCC	2 cut(s)	189, 1034
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	7 cut(s)	96, 228, 403, 668, 745, 764, 1009
SspDI	GGCGCC	1 cut(s)	102
SstI	GAGCTC	1 cut(s)	495
StyD4I	CCNGG	1 cut(s)	852
TaaI	ACNGT	5 cut(s)	424, 514, 631, 736, 1062
TaiI	ACGT	3 cut(s)	63, 260, 1054
TaqI	TCGA	4 cut(s)	141, 264, 768, 894
TaqII	GACCGA	1 cut(s)	930
TasI	AATT	7 cut(s)	96, 228, 403, 668, 745, 764, 1009
TatI	WGTACW	1 cut(s)	615
TauI	GCSGC	5 cut(s)	254, 329, 332, 335, 345
TfiI	GAWTC	8 cut(s)	109, 171, 223, 266, 526, 888, 916, 1019
Tru1I	TTAA	3 cut(s)	401, 473, 995
Tru9I	TTAA	3 cut(s)	401, 473, 995
TscAI	CASTG	3 cut(s)	427, 634, 846
TseI	GCWGC	6 cut(s)	41, 44, 47, 50, 180, 463
TspDTI	ATGAA	6 cut(s)	163, 602, 681, 707, 917, 1022
TspGWI	ACGGA	1 cut(s)	1013
TspRI	CASTG	3 cut(s)	427, 634, 846
VpaK11BI	GGWCC	2 cut(s)	189, 1034
XapI	RAATTY	4 cut(s)	228, 403, 764, 1009
XcmI	CCANNNNNNNNNTGG	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.