Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001513

Physical Location & Seq

Genomic Coordinates Forward (+)

73996917 .. 73997994

Gene Structure 1078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021301

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGCCAGTCATCTCTGAACCCAGAGACAATGCTATCCGCTTCCTCAAGGCCTTTCCGATGCTACAGAGCAGCAGAGCTATTCAATCACACTCTGGCTCCCCACCCGTTTCCGATTCGGATTCAAAAATGCCCACCACTTCCCGACACGAACGACTCTGGGTCCCCATCCTTCACCACCCCGCTCAAAGAAACCATCTTTACCTCGTAACCCAAATCTTCAAACTCGCCATTGCTTCCAAAATTCAACCCTTAAACTCAAATTGCTATCTCACTGTTGCCAAAGCCTTTGCAAAAGCAAGTGATTGTGTTGTGGAGCTGCTCAATTTTACCGAGCAAGTATTGGAACTGACCCAACCCAGCATGACAGTAATAAACAGACTTCTCTTTGCATTTGGTCAATGCAAAGAGACTGATAATGCAATTTTGATCTTTGCCCAGGTGAAAGATCGAAACTTTGCACTGGATTTGTACACATACAACACTGTTTTTGAGATATTGGGCCGGGCGGGTCGTACAGGTGAAATGCTGGGGGCTGCTTGGGAAATGAAGGAAGCTGGGATTGACCCGGATTTGGTTTCTTACAATACAGTGATAAACCATGTGAGGAAGTTTGGGGAGGTTGATATGTGCTTGTTCTATTTCAAGGAAATGTGTGAAAAGGGTGTTCAGCCTGATTTGCTTGCTTACACTGCAGTCATTGATGGGTTGGGGGGATCAGGAAATATTGAGGAGTCATTGAGGTTCTTCGAAGAGATGAAGGAGATGCGGATTCGGCCTTCGTTGTATCTTTATAGAGCAGTGATCAGTAATTTGAAGAAGATGGGGAAGGTGGAGACGGCAGTGACTTTTATGGAGGAGATGAATTCATGTGCTTCAAGTCTTGCTTGTCCTAAATGGAATAAACGCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

304

Amino Acids

34.27

Weight (kDa)

7.0

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	133 - 280	1.6e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	143 - 200	1.9e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	158 - 199	7e-06	PPR repeat family
PPR_2	PF13041	189 - 236	1.3e-10	PPR repeat family
PPR_3	PF13812	214 - 269	1.6e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	224 - 271	1.3e-07	PPR repeat family
PPR	PF01535	228 - 256	9.2e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11900
fragaria_vesca	FvH4_6g24020 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44670 FvH4_6g44670 FvH4_6g44670
malus_domestica	MD14G1065400.v1.1 MD17G1084400.v1.1
prunus_persica	Prupe.3G231200_v2.0.a1
pyrus_communis	pycom17g08150
rosa_chinensis	RchiOBHm_Chr1g0342741 RchiOBHm_Chr1g0342831 RchiOBHm_Chr2g0161831
rosa_laevigata	RLG00000021301 RLG00000029118 RLG00000029172 RLG00000029191
rosa_multiflora	Rmu_co8023038.1_g000001 Rmu_sc0001993.1_g000024 Rmu_sc0004502.1_g000002 Rmu_sc0011563.1_g000011
rosa_roxburghii	Rroxscaffold_2G00088520 Rroxscaffold_2G00088540 Rroxscaffold_2G00118030 Rroxscaffold_3G00231880 Rroxscaffold_4G00313190 Rroxscaffold_4G00313220 Rroxscaffold_7G00197130
rosa_rugosa	Rorug01G0146200.1 Rorug02G0492600
rosa_samantha	Rh1AG162400 Rh1AG162900 Rh1AG163800 Rh1AG164600 Rh1BG129700 Rh1CG152900 Rh1CG153400 Rh2AG558200 Rh2AG558300 Rh2CG541900 Rh2CG542300 Rh2DG581000 Rh2DG581900 Rh3CG249700
rosa_wichuraiana	Rw1G013300 Rw1G013340 Rw1G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	182
AccII	CGCG	1 cut(s)	906
AciI	CCGC	4 cut(s)	37, 180, 506, 766
AclWI	GGATC	1 cut(s)	721
AcsI	RAATTY	2 cut(s)	240, 862
AfaI	GTAC	2 cut(s)	470, 514
AfiI	CCNNNNNNNGG	1 cut(s)	571
AgsI	TTSAA	7 cut(s)	83, 123, 220, 245, 643, 814, 876
AhdI	GACNNNNNGTC	1 cut(s)	158
AjnI	CCWGG	1 cut(s)	435
AluBI	AGCT	3 cut(s)	77, 316, 554
AluI	AGCT	3 cut(s)	77, 316, 554
Alw26I	GTCTC	3 cut(s)	18, 401, 827
AlwI	GGATC	1 cut(s)	721
AoxI	GGCC	3 cut(s)	48, 499, 773
ApeKI	GCWGC	3 cut(s)	69, 316, 533
ApoI	RAATTY	2 cut(s)	240, 862
AspS9I	GGNCC	2 cut(s)	160, 499
AsuC2I	CCSGG	2 cut(s)	503, 566
AsuHPI	GGTGA	3 cut(s)	164, 451, 530
AsuII	TTCGAA	1 cut(s)	747
AvaII	GGWCC	1 cut(s)	160
BbvI	GCAGC	3 cut(s)	81, 303, 520
BccI	CCATC	4 cut(s)	173, 201, 695, 814
BceAI	ACGGC	1 cut(s)	852
BciT130I	CCWGG	1 cut(s)	437
BclI	TGATCA	1 cut(s)	801
BcnI	CCSGG	2 cut(s)	503, 566
BcoDI	GTCTC	3 cut(s)	18, 401, 827
BfmI	CTRYAG	2 cut(s)	62, 690
BisI	GCNGC	3 cut(s)	70, 317, 534
BlsI	GCNGC	3 cut(s)	71, 318, 535
Bme1390I	CCNGG	3 cut(s)	437, 503, 566
Bme18I	GGWCC	1 cut(s)	160
BmeRI	GACNNNNNGTC	1 cut(s)	158
BmgT120I	GGNCC	2 cut(s)	160, 499
BmiI	GGNNCC	3 cut(s)	97, 161, 162
BmrFI	CCNGG	3 cut(s)	437, 503, 566
BmsI	GCATC	2 cut(s)	48, 753
Bpu14I	TTCGAA	1 cut(s)	747
BpuEI	CTTGAG	1 cut(s)	29
BpuMI	CCSGG	2 cut(s)	503, 566
BsaJI	CCNNGG	1 cut(s)	435
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	1 cut(s)	571
Bse1I	ACTGG	2 cut(s)	5, 465
Bse3DI	GCAATG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	437
BseDI	CCNNGG	1 cut(s)	435
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	571
BseMI	GCAATG	1 cut(s)	228
BseNI	ACTGG	2 cut(s)	5, 465
BseRI	GAGGAG	2 cut(s)	743, 869
BseXI	GCAGC	3 cut(s)	81, 303, 520
BseYI	CCCAGC	3 cut(s)	356, 526, 554
Bsh1236I	CGCG	1 cut(s)	906
BshFI	GGCC	3 cut(s)	50, 501, 775
BsiSI	CCGG	2 cut(s)	502, 566
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	571
BsmAI	GTCTC	3 cut(s)	18, 401, 827
BsmBI	CGTCTC	1 cut(s)	827
BsmFI	GGGAC	1 cut(s)	146
BsnI	GGCC	3 cut(s)	50, 501, 775
Bsp119I	TTCGAA	1 cut(s)	747
Bsp1407I	TGTACA	1 cut(s)	468
Bsp143I	GATC	4 cut(s)	426, 445, 713, 801
BspACI	CCGC	4 cut(s)	37, 180, 506, 766
BspANI	GGCC	3 cut(s)	50, 501, 775
BspFNI	CGCG	1 cut(s)	906
BspLI	GGNNCC	3 cut(s)	97, 161, 162
BspMAI	CTGCAG	1 cut(s)	694
BspPI	GGATC	1 cut(s)	721
BspT104I	TTCGAA	1 cut(s)	747
BsrBI	CCGCTC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	228
BsrGI	TGTACA	1 cut(s)	468
BsrI	ACTGG	2 cut(s)	5, 465
BssECI	CCNNGG	1 cut(s)	435
BssMI	GATC	4 cut(s)	426, 445, 713, 801
Bst2UI	CCWGG	1 cut(s)	437
Bst4CI	ACNGT	4 cut(s)	274, 367, 484, 589
Bst6I	CTCTTC	1 cut(s)	744
BstAUI	TGTACA	1 cut(s)	468
BstBI	TTCGAA	1 cut(s)	747
BstC8I	GCNNGC	1 cut(s)	681
BstF5I	GGATG	1 cut(s)	165
BstFNI	CGCG	1 cut(s)	906
BstKTI	GATC	4 cut(s)	429, 448, 716, 804
BstMAI	GTCTC	3 cut(s)	18, 401, 827
BstMBI	GATC	4 cut(s)	426, 445, 713, 801
BstMWI	GCNNNNNNNGC	3 cut(s)	676, 689, 772
BstNI	CCWGG	1 cut(s)	437
BstSCI	CCNGG	3 cut(s)	435, 501, 564
BstSFI	CTRYAG	2 cut(s)	62, 690
BstUI	CGCG	1 cut(s)	906
BstV1I	GCAGC	3 cut(s)	81, 303, 520
BsuRI	GGCC	3 cut(s)	50, 501, 775
BtsCI	GGATG	1 cut(s)	165
BtsI	GCAGTG	3 cut(s)	687, 804, 846
BtsIMutI	CAGTG	7 cut(s)	270, 458, 480, 594, 687, 804, 846
Cac8I	GCNNGC	1 cut(s)	681
Cfr13I	GGNCC	2 cut(s)	160, 499
Csp6I	GTAC	2 cut(s)	469, 513
CviAII	CATG	3 cut(s)	361, 599, 867
CviQI	GTAC	2 cut(s)	469, 513
DpnI	GATC	4 cut(s)	428, 447, 715, 803
DpnII	GATC	4 cut(s)	426, 445, 713, 801
DriI	GACNNNNNGTC	1 cut(s)	158
Eam1104I	CTCTTC	1 cut(s)	744
Eam1105I	GACNNNNNGTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	744
Eco147I	AGGCCT	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	160
EcoO109I	RGGNCCY	1 cut(s)	160
EcoRI	GAATTC	1 cut(s)	862
EcoRII	CCWGG	1 cut(s)	435
Esp3I	CGTCTC	1 cut(s)	827
FaeI	CATG	3 cut(s)	364, 602, 870
FaiI	YATR	7 cut(s)	362, 475, 600, 626, 792, 851, 868
FalI	AAGNNNNNCTT	2 cut(s)	868, 900
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	3 cut(s)	360, 598, 866
FauI	CCCGC	2 cut(s)	187, 499
FbaI	TGATCA	1 cut(s)	801
Fnu4HI	GCNGC	3 cut(s)	70, 317, 534
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	3 cut(s)	70, 317, 534
GluI	GCNGC	3 cut(s)	70, 317, 534
GsaI	CCCAGC	3 cut(s)	360, 530, 558
HaeIII	GGCC	3 cut(s)	50, 501, 775
HapII	CCGG	2 cut(s)	502, 566
Hin1II	CATG	3 cut(s)	364, 602, 870
HinfI	GANTC	5 cut(s)	113, 119, 153, 731, 769
HpaII	CCGG	2 cut(s)	502, 566
HphI	GGTGA	3 cut(s)	164, 451, 530
Hpy166II	GTNNAC	1 cut(s)	471
Hpy188I	TCNGA	4 cut(s)	16, 57, 112, 118
Hpy188III	TCNNGA	2 cut(s)	141, 717
Hpy8I	GTNNAC	1 cut(s)	471
HpyAV	CCTTC	5 cut(s)	179, 541, 751, 786, 820
HpyCH4III	ACNGT	4 cut(s)	274, 367, 484, 589
HpyCH4V	TGCA	6 cut(s)	290, 389, 402, 419, 458, 692
HpyF10VI	GCNNNNNNNGC	3 cut(s)	676, 689, 772
Hsp92II	CATG	3 cut(s)	364, 602, 870
KflI	GGGWCCC	1 cut(s)	160
Ksp22I	TGATCA	1 cut(s)	801
Kzo9I	GATC	4 cut(s)	426, 445, 713, 801
LmnI	GCTCC	2 cut(s)	101, 313
Lsp1109I	GCAGC	3 cut(s)	81, 303, 520
LweI	GCATC	2 cut(s)	48, 753
MaeIII	GTNAC	2 cut(s)	205, 841
MalI	GATC	4 cut(s)	428, 447, 715, 803
MbiI	CCGCTC	1 cut(s)	182
MboI	GATC	4 cut(s)	426, 445, 713, 801
MboII	GAAGA	5 cut(s)	208, 736, 761, 826, 829
MluCI	AATT	6 cut(s)	240, 259, 322, 420, 808, 862
MlyI	GAGTC	2 cut(s)	147, 740
MnlI	CCTC	7 cut(s)	53, 212, 597, 610, 721, 732, 847
MseI	TTAA	1 cut(s)	251
MspI	CCGG	2 cut(s)	502, 566
MspR9I	CCNGG	3 cut(s)	437, 503, 566
MvaI	CCWGG	1 cut(s)	437
MvnI	CGCG	1 cut(s)	906
MwoI	GCNNNNNNNGC	3 cut(s)	676, 689, 772
NciI	CCSGG	2 cut(s)	503, 566
NdeII	GATC	4 cut(s)	426, 445, 713, 801
NlaIII	CATG	3 cut(s)	364, 602, 870
NlaIV	GGNNCC	3 cut(s)	97, 161, 162
NmuCI	GTSAC	1 cut(s)	841
NspV	TTCGAA	1 cut(s)	747
PceI	AGGCCT	1 cut(s)	50
PfeI	GAWTC	3 cut(s)	113, 119, 769
PkrI	GCNGC	3 cut(s)	71, 318, 535
PleI	GAGTC	2 cut(s)	147, 739
PpsI	GAGTC	2 cut(s)	147, 739
PpuMI	RGGWCCY	1 cut(s)	160
Psp5II	RGGWCCY	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	435
PspFI	CCCAGC	3 cut(s)	356, 526, 554
PspGI	CCWGG	1 cut(s)	435
PspN4I	GGNNCC	3 cut(s)	97, 161, 162
PspPI	GGNCC	2 cut(s)	160, 499
PspPPI	RGGWCCY	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	694
RsaI	GTAC	2 cut(s)	470, 514
RsaNI	GTAC	2 cut(s)	469, 513
SaqAI	TTAA	1 cut(s)	251
SatI	GCNGC	3 cut(s)	70, 317, 534
Sau3AI	GATC	4 cut(s)	426, 445, 713, 801
Sau96I	GGNCC	2 cut(s)	160, 499
SchI	GAGTC	2 cut(s)	147, 740
ScrFI	CCNGG	3 cut(s)	437, 503, 566
SetI	ASST	9 cut(s)	79, 204, 318, 441, 520, 556, 621, 743, 831
SfaNI	GCATC	2 cut(s)	48, 753
SfcI	CTRYAG	2 cut(s)	62, 690
SfuI	TTCGAA	1 cut(s)	747
SinI	GGWCC	1 cut(s)	160
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	6 cut(s)	240, 259, 322, 420, 808, 862
SseBI	AGGCCT	1 cut(s)	50
SsiI	CCGC	4 cut(s)	37, 180, 506, 766
SspI	AATATT	1 cut(s)	724
StuI	AGGCCT	1 cut(s)	50
StyD4I	CCNGG	3 cut(s)	435, 501, 564
TaaI	ACNGT	4 cut(s)	274, 367, 484, 589
TaqI	TCGA	2 cut(s)	448, 747
TasI	AATT	6 cut(s)	240, 259, 322, 420, 808, 862
TatI	WGTACW	1 cut(s)	468
TfiI	GAWTC	3 cut(s)	113, 119, 769
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TscAI	CASTG	7 cut(s)	277, 465, 487, 594, 694, 804, 846
TseFI	GTSAC	1 cut(s)	841
TseI	GCWGC	3 cut(s)	69, 316, 533
Tsp45I	GTSAC	1 cut(s)	841
TspDTI	ATGAA	4 cut(s)	560, 770, 855, 875
TspRI	CASTG	7 cut(s)	277, 465, 487, 594, 694, 804, 846
VpaK11BI	GGWCC	1 cut(s)	160
XapI	RAATTY	2 cut(s)	240, 862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.