Rroxscaffold_2G00088520

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
10426986 .. 10430436
3451 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00088520.1

Sequence Viewer

Length: 336 bp
ATGTGCTTGTTCTATTTCAAGGAAACGTGTGAAAAGGGTGTTCGGCCTGATTTGTTTACTTACACTGCAGTCATTAATGGGTTGGGGAGGTCAGGAAATATTGAGGAGTCATTGAAGTTCTTCGATGAGATGAAGGAGAGGCGGATTCGGCCTTCGTTGTATCTTTATAGGGCAGTGATCAGTAATTTGAAGGAGATGGGGAAGGTGGAGATGGCAGTGACTTTCATGGAGGAGATGAATTCGTGTGCTTCAAGTCTTGCTAGTCCTAAATGGAATAAACAAATTCTCTCCAGGTTCCAATGGACGAATGACCACTATGGGTGTATATGTGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.91

Weight (kDa)

8.29

Isoelectric Point (pI)

54.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 7 - 61 5.6e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 12 - 45 4.8e-11 PPR repeat
PPR_2 PF13041 16 - 62 3.1e-11 PPR repeat family
PPR PF01535 19 - 49 1.5e-09 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 142
AcsI RAATTY 2 cut(s) 238, 282
AflIII ACRYGT 1 cut(s) 26
AgsI TTSAA 4 cut(s) 19, 115, 190, 252
AjnI CCWGG 1 cut(s) 290
AoxI GGCC 2 cut(s) 44, 149
ApoI RAATTY 2 cut(s) 238, 282
AseI ATTAAT 1 cut(s) 75
Asp700I GAANNNNTTC 1 cut(s) 119
BccI CCATC 2 cut(s) 190, 205
BciT130I CCWGG 1 cut(s) 292
BclI TGATCA 1 cut(s) 177
BfaI CTAG 1 cut(s) 261
BfmI CTRYAG 1 cut(s) 66
Bme1390I CCNGG 1 cut(s) 292
BmiI GGNNCC 1 cut(s) 296
BmrFI CCNGG 1 cut(s) 292
BpmI CTGGAG 1 cut(s) 274
BseBI CCWGG 1 cut(s) 292
BseRI GAGGAG 2 cut(s) 119, 245
BshFI GGCC 2 cut(s) 46, 151
BsnI GGCC 2 cut(s) 46, 151
Bsp143I GATC 1 cut(s) 177
BspACI CCGC 1 cut(s) 142
BspANI GGCC 2 cut(s) 46, 151
BspLI GGNNCC 1 cut(s) 296
BspMAI CTGCAG 1 cut(s) 70
BssMI GATC 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 292
BstKTI GATC 1 cut(s) 180
BstMBI GATC 1 cut(s) 177
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstNI CCWGG 1 cut(s) 292
BstSCI CCNGG 1 cut(s) 290
BstSFI CTRYAG 1 cut(s) 66
BsuRI GGCC 2 cut(s) 46, 151
BtsI GCAGTG 3 cut(s) 63, 180, 222
BtsIMutI CAGTG 3 cut(s) 63, 180, 222
CviAII CATG 1 cut(s) 226
CviJI RGCY 2 cut(s) 46, 151
CviKI_1 RGCY 2 cut(s) 46, 151
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
EciI GGCGGA 1 cut(s) 157
EcoRI GAATTC 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 290
FaeI CATG 1 cut(s) 229
FaiI YATR 5 cut(s) 168, 227, 318, 326, 328
FatI CATG 1 cut(s) 225
FbaI TGATCA 1 cut(s) 177
FspBI CTAG 1 cut(s) 261
GsuI CTGGAG 1 cut(s) 274
HaeIII GGCC 2 cut(s) 46, 151
Hin1II CATG 1 cut(s) 229
HinfI GANTC 2 cut(s) 107, 145
Hpy166II GTNNAC 1 cut(s) 57
Hpy188III TCNNGA 1 cut(s) 93
Hpy8I GTNNAC 1 cut(s) 57
HpyAV CCTTC 4 cut(s) 127, 162, 184, 196
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
HpySE526I ACGT 1 cut(s) 26
Hsp92II CATG 1 cut(s) 229
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 1 cut(s) 177
LpnPI CCDG 4 cut(s) 60, 78, 277, 304
MaeI CTAG 1 cut(s) 261
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 1 cut(s) 217
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 1 cut(s) 112
MluCI AATT 3 cut(s) 184, 238, 282
MlyI GAGTC 1 cut(s) 116
MnlI CCTC 4 cut(s) 81, 97, 132, 223
MroXI GAANNNNTTC 1 cut(s) 119
MseI TTAA 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 292
MvaI CCWGG 1 cut(s) 292
MwoI GCNNNNNNNGC 1 cut(s) 148
NdeII GATC 1 cut(s) 177
NlaIII CATG 1 cut(s) 229
NlaIV GGNNCC 1 cut(s) 296
NmuCI GTSAC 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 119
PfeI GAWTC 1 cut(s) 145
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PshBI ATTAAT 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 290
PspGI CCWGG 1 cut(s) 290
PspN4I GGNNCC 1 cut(s) 296
PstI CTGCAG 1 cut(s) 70
SaqAI TTAA 1 cut(s) 75
Sau3AI GATC 1 cut(s) 177
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 1 cut(s) 292
SetI ASST 4 cut(s) 29, 92, 207, 296
SfcI CTRYAG 1 cut(s) 66
Sse9I AATT 3 cut(s) 184, 238, 282
SsiI CCGC 1 cut(s) 142
SspI AATATT 1 cut(s) 100
SspMI CTAG 1 cut(s) 261
StyD4I CCNGG 1 cut(s) 290
TaiI ACGT 1 cut(s) 29
TaqI TCGA 1 cut(s) 123
TasI AATT 3 cut(s) 184, 238, 282
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TscAI CASTG 3 cut(s) 70, 180, 222
TseFI GTSAC 1 cut(s) 217
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 3 cut(s) 146, 214, 251
TspRI CASTG 3 cut(s) 70, 180, 222
VspI ATTAAT 1 cut(s) 75
XapI RAATTY 2 cut(s) 238, 282
XmnI GAANNNNTTC 1 cut(s) 119
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.