Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001513

Physical Location & Seq

Genomic Coordinates Forward (+)

36436845 .. 36453175

Gene Structure 16331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00313190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGCTCTCCACTTCCTCAAGCCGTTTCCGATGCCACAGAGCAGCAGAGCTATTCAAACCCCCTCTGGGTCCCGACCCGTTTCCGATTCGGATTCAGAAATCTCCACCCTCTGGGTCACAAATTCTCTCCACCATTGAAAACGCCCCTACATTGCTTCAATCCCTACACAACAAACGCATCTTCCTAACCCCCAAATCTTTCAACCGCGTTTTGATCTCAGCCGCCCAAAGAAACCATCTTTACCTCCTAACCCAAATCTTCAAGCTCGCAGTTGCTTCCAAAATCCAACCTTTAAACTCAGATTGCTATCTCACTGTAGCCAAAGCCTTTGCAAGAGCAGATGATTGTGTTGTGGAGCTGCTCAGTTTTACCGAGCAAGTATTGGAATTGACCCAACCGAGCATGACAGTAATAAACAGGCTTCTCTTTGCATTGCGTCAATGCAAAGAGACCGATAATGCAATTTTGATCTTCACCCAGGTGAAAGATCGAAACTTTACTCCGGATATGTACACATACAACACTGTTCTTGAGATATTGGGCCGGGCGGGTCGGACAGGTGAGATGCTGGGGTTGTTTGGGGAAATGAAGGAAGCTGGGATTGACCCGGATTTGGTTTCTTACAATACAGTGATAAACCATGTGGGGAAGTTTGGGGAAGTTGATATGTGCTTGTTGTATTTCAAGGAAATGTGTGAAAAGGGTGTTCAGCCTGATTTGCTTACTTACACTGCAGTCATTGATGGGTTGGGGAGGTCAGGAGACATTGAGGAGTCGTTGAAGTTGTTTGGTGAGATGAAGGAGAGGCGGATTCGGCCTTCGTTGTATCTTTATAGAGCAGTGATTAGTAATTTGAAGAAGATGGGGAAGGTGGAGATGGCGGTGAGTTTTATGGAGGAGATGAATTCGTGTGCTTCAAGTCTTCGTGCTAGTCGCATGATGTTTCTGAGCTGGAAAAAATGCTTACAGAACAATCAAAGATACTCTCAAGTCTTCAACAACAGGTTTGATGATTTGGCATCAAAGGAAATACGTCCCTGGACACACATGATGGAGGTACCCCAGCTCCATGGGTTCGGGCCAGCTGCCATTCCCTTGTTGGAGGCATATAAGATGCTTTTGAAGTTCCTAGGGAACTTGAAGAATCTTAGAGACTCACATGCTGCTCTTGCTGTTGGATCATCTGACTCAGTTGCTGTAAGCAGCAAAGAACTTAGGACCCCTCATTTAAAAGTCGAAATGGAGACCCCTCATTTAAAAGTCGAAATGGAGAAAAGTTACAACTTTGCACAAGAGGATCGACATCAAGGTAATGCATCTCATTCCGACTCATTCTACTATACTCGACTAAGAGAGATATTGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

455

Amino Acids

51.68

Weight (kDa)

8.84

Isoelectric Point (pI)

35.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	139 - 259	1.3e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	157 - 217	1.1e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	168 - 213	1.3e-10	PPR repeat family
PPR	PF01535	171 - 201	6e-06	PPR repeat
PPR_2	PF13041	203 - 251	4e-13	PPR repeat family
PPR_3	PF13812	228 - 283	1e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	234 - 267	1.1e-08	PPR repeat
PPR_2	PF13041	242 - 285	2.2e-08	PPR repeat family
PPR	PF01535	242 - 271	2.5e-08	PPR repeat
Plant_NMP1	PF06694	335 - 399	1.5e-29	Plant nuclear matrix protein 1 (NMP1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11900
fragaria_vesca	FvH4_6g24020 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44670 FvH4_6g44670 FvH4_6g44670
malus_domestica	MD14G1065400.v1.1 MD17G1084400.v1.1
prunus_persica	Prupe.3G231200_v2.0.a1
pyrus_communis	pycom17g08150
rosa_chinensis	RchiOBHm_Chr1g0342741 RchiOBHm_Chr1g0342831 RchiOBHm_Chr2g0161831
rosa_laevigata	RLG00000021301 RLG00000029118 RLG00000029172 RLG00000029191
rosa_multiflora	Rmu_co8023038.1_g000001 Rmu_sc0001993.1_g000024 Rmu_sc0004502.1_g000002 Rmu_sc0011563.1_g000011
rosa_roxburghii	Rroxscaffold_2G00088520 Rroxscaffold_2G00088540 Rroxscaffold_2G00118030 Rroxscaffold_3G00231880 Rroxscaffold_4G00313190 Rroxscaffold_4G00313220 Rroxscaffold_7G00197130
rosa_rugosa	Rorug01G0146200.1 Rorug02G0492600
rosa_samantha	Rh1AG162400 Rh1AG162900 Rh1AG163800 Rh1AG164600 Rh1BG129700 Rh1CG152900 Rh1CG153400 Rh2AG558200 Rh2AG558300 Rh2CG541900 Rh2CG542300 Rh2DG581000 Rh2DG581900 Rh3CG249700
rosa_wichuraiana	Rw1G013300 Rw1G013340 Rw1G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1057
AccB1I	GGYRCC	1 cut(s)	1057
AccB7I	CCANNNNNTGG	1 cut(s)	110
AccII	CGCG	1 cut(s)	207
AccIII	TCCGGA	1 cut(s)	502
AciI	CCGC	5 cut(s)	205, 222, 548, 808, 881
AclWI	GGATC	2 cut(s)	1186, 1305
AcsI	RAATTY	2 cut(s)	120, 904
AfaI	GTAC	2 cut(s)	512, 1059
AfiI	CCNNNNNNNGG	3 cut(s)	65, 110, 613
AjnI	CCWGG	2 cut(s)	477, 1037
AleI	CACNNNNGTG	1 cut(s)	479
AluBI	AGCT	7 cut(s)	49, 265, 358, 596, 951, 1066, 1085
AluI	AGCT	7 cut(s)	49, 265, 358, 596, 951, 1066, 1085
Alw26I	GTCTC	4 cut(s)	443, 756, 1146, 1238
AlwI	GGATC	2 cut(s)	1186, 1305
AlwNI	CAGNNNCTG	1 cut(s)	1196
Aor13HI	TCCGGA	1 cut(s)	502
AoxI	GGCC	3 cut(s)	541, 815, 1079
ApeKI	GCWGC	5 cut(s)	41, 358, 1085, 1163, 1203
ApoI	RAATTY	2 cut(s)	120, 904
Asp718I	GGTACC	1 cut(s)	1057
AspA2I	CCTAGG	1 cut(s)	1129
AspS9I	GGNCC	4 cut(s)	68, 541, 1079, 1218
AsuC2I	CCSGG	2 cut(s)	545, 608
AsuHPI	GGTGA	5 cut(s)	466, 493, 572, 803, 895
AvaII	GGWCC	2 cut(s)	68, 1218
AvrII	CCTAGG	1 cut(s)	1129
BanI	GGYRCC	1 cut(s)	1057
BbsI	GAAGAC	2 cut(s)	914, 985
BbvI	GCAGC	5 cut(s)	53, 345, 1072, 1150, 1215
BccI	CCATC	5 cut(s)	243, 737, 856, 871, 1045
BceAI	ACGGC	1 cut(s)	6
BciT130I	CCWGG	2 cut(s)	479, 1039
BcnI	CCSGG	2 cut(s)	545, 608
BcoDI	GTCTC	4 cut(s)	443, 756, 1146, 1238
BfaI	CTAG	2 cut(s)	930, 1130
BfmI	CTRYAG	2 cut(s)	315, 732
BisI	GCNGC	6 cut(s)	42, 222, 359, 1086, 1164, 1204
BlnI	CCTAGG	1 cut(s)	1129
BlsI	GCNGC	6 cut(s)	43, 223, 360, 1087, 1165, 1205
Bme1390I	CCNGG	4 cut(s)	479, 545, 608, 1039
Bme18I	GGWCC	2 cut(s)	68, 1218
BmgT120I	GGNCC	4 cut(s)	68, 541, 1079, 1218
BmiI	GGNNCC	4 cut(s)	69, 70, 1059, 1220
BmrFI	CCNGG	4 cut(s)	479, 545, 608, 1039
BmsI	GCATC	6 cut(s)	20, 186, 555, 1028, 1104, 1325
BpiI	GAAGAC	2 cut(s)	914, 985
BpuEI	CTTGAG	2 cut(s)	551, 972
BpuMI	CCSGG	2 cut(s)	545, 608
BsaBI	GATNNNNATC	2 cut(s)	306, 1302
BsaI	GGTCTC	2 cut(s)	443, 1238
BsaJI	CCNNGG	4 cut(s)	477, 1037, 1069, 1129
BsaWI	WCCGGW	1 cut(s)	502
BsaXI	ACNNNNNCTCC	2 cut(s)	1050, 1080
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 110, 613
Bse3DI	GCAATG	2 cut(s)	149, 431
Bse8I	GATNNNNATC	2 cut(s)	306, 1302
BseAI	TCCGGA	1 cut(s)	502
BseBI	CCWGG	2 cut(s)	479, 1039
BseDI	CCNNGG	4 cut(s)	477, 1037, 1069, 1129
BseJI	GATNNNNATC	2 cut(s)	306, 1302
BseLI	CCNNNNNNNGG	3 cut(s)	65, 110, 613
BseMI	GCAATG	2 cut(s)	149, 431
BseMII	CTCAG	5 cut(s)	231, 312, 376, 938, 1203
BseRI	GAGGAG	2 cut(s)	785, 911
BseXI	GCAGC	5 cut(s)	53, 345, 1072, 1150, 1215
BseYI	CCCAGC	3 cut(s)	568, 596, 1062
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	3 cut(s)	543, 817, 1081
BshNI	GGYRCC	1 cut(s)	1057
BsiSI	CCGG	3 cut(s)	503, 544, 608
BslFI	GGGAC	2 cut(s)	54, 1020
BslI	CCNNNNNNNGG	3 cut(s)	65, 110, 613
BsmAI	GTCTC	4 cut(s)	443, 756, 1146, 1238
BsmFI	GGGAC	2 cut(s)	54, 1020
BsnI	GGCC	3 cut(s)	543, 817, 1081
Bso31I	GGTCTC	2 cut(s)	443, 1238
Bsp13I	TCCGGA	1 cut(s)	502
Bsp1407I	TGTACA	1 cut(s)	510
Bsp143I	GATC	5 cut(s)	213, 468, 487, 1178, 1297
Bsp19I	CCATGG	1 cut(s)	1069
BspACI	CCGC	5 cut(s)	205, 222, 548, 808, 881
BspANI	GGCC	3 cut(s)	543, 817, 1081
BspCNI	CTCAG	5 cut(s)	230, 311, 375, 939, 1202
BspEI	TCCGGA	1 cut(s)	502
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	4 cut(s)	69, 70, 1059, 1220
BspMAI	CTGCAG	1 cut(s)	736
BspPI	GGATC	2 cut(s)	1186, 1305
BspT107I	GGYRCC	1 cut(s)	1057
BspTNI	GGTCTC	2 cut(s)	443, 1238
BsrDI	GCAATG	2 cut(s)	149, 431
BsrGI	TGTACA	1 cut(s)	510
BssECI	CCNNGG	4 cut(s)	477, 1037, 1069, 1129
BssMI	GATC	5 cut(s)	213, 468, 487, 1178, 1297
BssT1I	CCWWGG	2 cut(s)	1069, 1129
Bst2UI	CCWGG	2 cut(s)	479, 1039
Bst4CI	ACNGT	4 cut(s)	316, 409, 526, 631
BstAUI	TGTACA	1 cut(s)	510
BstC8I	GCNNGC	2 cut(s)	267, 1083
BstDEI	CTNAG	9 cut(s)	217, 298, 362, 947, 1148, 1189, 1214, 1349, 1365
BstDSI	CCRYGG	1 cut(s)	1069
BstFNI	CGCG	1 cut(s)	207
BstKTI	GATC	5 cut(s)	216, 471, 490, 1181, 1300
BstMAI	GTCTC	4 cut(s)	443, 756, 1146, 1238
BstMBI	GATC	5 cut(s)	213, 468, 487, 1178, 1297
BstMWI	GCNNNNNNNGC	3 cut(s)	718, 814, 1169
BstNI	CCWGG	2 cut(s)	479, 1039
BstNSI	RCATGY	1 cut(s)	1163
BstSCI	CCNGG	4 cut(s)	477, 543, 606, 1037
BstSFI	CTRYAG	2 cut(s)	315, 732
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	5 cut(s)	53, 345, 1072, 1150, 1215
BstV2I	GAAGAC	2 cut(s)	914, 985
BstXI	CCANNNNNNTGG	1 cut(s)	1070
BsuRI	GGCC	3 cut(s)	543, 817, 1081
BtgI	CCRYGG	1 cut(s)	1069
BtsI	GCAGTG	2 cut(s)	729, 846
BtsIMutI	CAGTG	5 cut(s)	312, 522, 636, 729, 846
Cac8I	GCNNGC	2 cut(s)	267, 1083
CaiI	CAGNNNCTG	1 cut(s)	1196
Cfr13I	GGNCC	4 cut(s)	68, 541, 1079, 1218
CseI	GACGC	1 cut(s)	425
Csp6I	GTAC	2 cut(s)	511, 1058
CviAII	CATG	6 cut(s)	403, 641, 937, 1048, 1070, 1160
CviQI	GTAC	2 cut(s)	511, 1058
DdeI	CTNAG	9 cut(s)	217, 298, 362, 947, 1148, 1189, 1214, 1349, 1365
DpnI	GATC	5 cut(s)	215, 470, 489, 1180, 1299
DpnII	GATC	5 cut(s)	213, 468, 487, 1178, 1297
DraI	TTTAAA	3 cut(s)	294, 1230, 1257
EciI	GGCGGA	1 cut(s)	823
Eco130I	CCWWGG	2 cut(s)	1069, 1129
Eco31I	GGTCTC	2 cut(s)	443, 1238
Eco47I	GGWCC	2 cut(s)	68, 1218
EcoO109I	RGGNCCY	2 cut(s)	68, 1218
EcoRI	GAATTC	1 cut(s)	904
EcoRII	CCWGG	2 cut(s)	477, 1037
EcoT14I	CCWWGG	2 cut(s)	1069, 1129
EcoT22I	ATGCAT	1 cut(s)	1318
ErhI	CCWWGG	2 cut(s)	1069, 1129
FaeI	CATG	6 cut(s)	406, 644, 940, 1051, 1073, 1163
FaqI	GGGAC	2 cut(s)	54, 1020
FatI	CATG	6 cut(s)	402, 640, 936, 1047, 1069, 1159
FauI	CCCGC	1 cut(s)	541
Fnu4HI	GCNGC	6 cut(s)	42, 222, 359, 1086, 1164, 1204
Fsp4HI	GCNGC	6 cut(s)	42, 222, 359, 1086, 1164, 1204
FspBI	CTAG	2 cut(s)	930, 1130
GluI	GCNGC	6 cut(s)	42, 222, 359, 1086, 1164, 1204
GsaI	CCCAGC	3 cut(s)	572, 600, 1066
HaeIII	GGCC	3 cut(s)	543, 817, 1081
HapII	CCGG	3 cut(s)	503, 544, 608
HgaI	GACGC	1 cut(s)	425
Hin1II	CATG	6 cut(s)	406, 644, 940, 1051, 1073, 1163
HinfI	GANTC	8 cut(s)	85, 91, 773, 811, 1144, 1154, 1187, 1328
HpaII	CCGG	3 cut(s)	503, 544, 608
HphI	GGTGA	5 cut(s)	466, 493, 572, 803, 895
Hpy166II	GTNNAC	1 cut(s)	513
Hpy188I	TCNGA	9 cut(s)	29, 84, 90, 96, 301, 555, 948, 1186, 1327
Hpy188III	TCNNGA	4 cut(s)	71, 503, 530, 759
Hpy8I	GTNNAC	1 cut(s)	513
HpyAV	CCTTC	4 cut(s)	583, 793, 828, 862
HpyCH4III	ACNGT	4 cut(s)	316, 409, 526, 631
HpyCH4IV	ACGT	1 cut(s)	1033
HpyCH4V	TGCA	7 cut(s)	332, 431, 444, 461, 734, 1289, 1316
HpyF10VI	GCNNNNNNNGC	3 cut(s)	718, 814, 1169
HpyF3I	CTNAG	9 cut(s)	217, 298, 362, 947, 1148, 1189, 1214, 1349, 1365
HpySE526I	ACGT	1 cut(s)	1033
Hsp92II	CATG	6 cut(s)	406, 644, 940, 1051, 1073, 1163
KflI	GGGWCCC	1 cut(s)	68
Kpn2I	TCCGGA	1 cut(s)	502
KpnI	GGTACC	1 cut(s)	1061
Kzo9I	GATC	5 cut(s)	213, 468, 487, 1178, 1297
LmnI	GCTCC	2 cut(s)	355, 1071
Lsp1109I	GCAGC	5 cut(s)	53, 345, 1072, 1150, 1215
LweI	GCATC	6 cut(s)	20, 186, 555, 1028, 1104, 1325
MaeI	CTAG	2 cut(s)	930, 1130
MaeII	ACGT	1 cut(s)	1033
MaeIII	GTNAC	2 cut(s)	114, 1277
MalI	GATC	5 cut(s)	215, 470, 489, 1180, 1299
MboI	GATC	5 cut(s)	213, 468, 487, 1178, 1297
MboII	GAAGA	8 cut(s)	172, 250, 463, 868, 871, 914, 985, 1153
MluCI	AATT	5 cut(s)	120, 386, 462, 850, 904
MlyI	GAGTC	4 cut(s)	782, 1148, 1181, 1322
MmeI	TCCRAC	5 cut(s)	310, 533, 1080, 1156, 1350
Mph1103I	ATGCAT	1 cut(s)	1318
MroI	TCCGGA	1 cut(s)	502
MseI	TTAA	3 cut(s)	293, 1229, 1256
MslI	CAYNNNNRTG	1 cut(s)	479
MspA1I	CMGCKG	1 cut(s)	1085
MspI	CCGG	3 cut(s)	503, 544, 608
MspR9I	CCNGG	4 cut(s)	479, 545, 608, 1039
MvaI	CCWGG	2 cut(s)	479, 1039
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	3 cut(s)	718, 814, 1169
NciI	CCSGG	2 cut(s)	545, 608
NcoI	CCATGG	1 cut(s)	1069
NdeII	GATC	5 cut(s)	213, 468, 487, 1178, 1297
NlaIII	CATG	6 cut(s)	406, 644, 940, 1051, 1073, 1163
NlaIV	GGNNCC	4 cut(s)	69, 70, 1059, 1220
NmuCI	GTSAC	1 cut(s)	114
NsiI	ATGCAT	1 cut(s)	1318
NspI	RCATGY	1 cut(s)	1163
OliI	CACNNNNGTG	1 cut(s)	479
PfeI	GAWTC	4 cut(s)	85, 91, 811, 1144
PflMI	CCANNNNNTGG	1 cut(s)	110
PkrI	GCNGC	6 cut(s)	43, 223, 360, 1087, 1165, 1205
PleI	GAGTC	4 cut(s)	781, 1148, 1181, 1322
PpsI	GAGTC	4 cut(s)	781, 1148, 1181, 1322
PpuMI	RGGWCCY	2 cut(s)	68, 1218
Psp5II	RGGWCCY	2 cut(s)	68, 1218
Psp6I	CCWGG	2 cut(s)	477, 1037
PspFI	CCCAGC	3 cut(s)	568, 596, 1062
PspGI	CCWGG	2 cut(s)	477, 1037
PspN4I	GGNNCC	4 cut(s)	69, 70, 1059, 1220
PspPI	GGNCC	4 cut(s)	68, 541, 1079, 1218
PspPPI	RGGWCCY	2 cut(s)	68, 1218
PstI	CTGCAG	1 cut(s)	736
PstNI	CAGNNNCTG	1 cut(s)	1196
PvuII	CAGCTG	1 cut(s)	1085
RsaI	GTAC	2 cut(s)	512, 1059
RsaNI	GTAC	2 cut(s)	511, 1058
RseI	CAYNNNNRTG	1 cut(s)	479
SaqAI	TTAA	3 cut(s)	293, 1229, 1256
SatI	GCNGC	6 cut(s)	42, 222, 359, 1086, 1164, 1204
Sau3AI	GATC	5 cut(s)	213, 468, 487, 1178, 1297
Sau96I	GGNCC	4 cut(s)	68, 541, 1079, 1218
SchI	GAGTC	4 cut(s)	782, 1148, 1181, 1322
ScrFI	CCNGG	4 cut(s)	479, 545, 608, 1039
SfaNI	GCATC	6 cut(s)	20, 186, 555, 1028, 1104, 1325
SfcI	CTRYAG	2 cut(s)	315, 732
SinI	GGWCC	2 cut(s)	68, 1218
SmiMI	CAYNNNNRTG	1 cut(s)	479
SmlI	CTYRAG	3 cut(s)	16, 530, 987
SmoI	CTYRAG	3 cut(s)	16, 530, 987
Sse9I	AATT	5 cut(s)	120, 386, 462, 850, 904
SsiI	CCGC	5 cut(s)	205, 222, 548, 808, 881
SspMI	CTAG	2 cut(s)	930, 1130
StyD4I	CCNGG	4 cut(s)	477, 543, 606, 1037
StyI	CCWWGG	2 cut(s)	1069, 1129
TaaI	ACNGT	4 cut(s)	316, 409, 526, 631
TaiI	ACGT	1 cut(s)	1036
TaqI	TCGA	5 cut(s)	490, 1236, 1263, 1300, 1345
TaqII	GACCGA	1 cut(s)	467
TasI	AATT	5 cut(s)	120, 386, 462, 850, 904
TatI	WGTACW	1 cut(s)	510
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	4 cut(s)	85, 91, 811, 1144
Tru1I	TTAA	3 cut(s)	293, 1229, 1256
Tru9I	TTAA	3 cut(s)	293, 1229, 1256
TscAI	CASTG	5 cut(s)	319, 529, 636, 736, 846
TseFI	GTSAC	1 cut(s)	114
TseI	GCWGC	5 cut(s)	41, 358, 1085, 1163, 1203
Tsp45I	GTSAC	1 cut(s)	114
TspDTI	ATGAA	3 cut(s)	602, 812, 917
TspRI	CASTG	5 cut(s)	319, 529, 636, 736, 846
Van91I	CCANNNNNTGG	1 cut(s)	110
VpaK11BI	GGWCC	2 cut(s)	68, 1218
XapI	RAATTY	2 cut(s)	120, 904
XceI	RCATGY	1 cut(s)	1163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1096
XmaJI	CCTAGG	1 cut(s)	1129
XspI	CTAG	2 cut(s)	930, 1130
Zsp2I	ATGCAT	1 cut(s)	1318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.