Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001993.1

Orthogroup ID

OG0001513

Physical Location & Seq

Genomic Coordinates Forward (+)

81425 .. 81794

Gene Structure 370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001993.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

atgctggggctgtctggggaaataaaggaagccgggattgacccggatttggtttcttacaatatatcattgatgggtttggggaggtcagaaaatattgaggagtctttgaggttcttcgatgagatgatggagaggcggattcagccttcgttgtatctttatagagcagtgatcagtaatttgaaagatggggaaggtggagatggaagtgactttcatggaggagatgagttgatgtgcttcaagtcttgccagtcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

87

Amino Acids

9.67

Weight (kDa)

4.4

Isoelectric Point (pI)

54.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11900
fragaria_vesca	FvH4_6g24020 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44670 FvH4_6g44670 FvH4_6g44670
malus_domestica	MD14G1065400.v1.1 MD17G1084400.v1.1
prunus_persica	Prupe.3G231200_v2.0.a1
pyrus_communis	pycom17g08150
rosa_chinensis	RchiOBHm_Chr1g0342741 RchiOBHm_Chr1g0342831 RchiOBHm_Chr2g0161831
rosa_laevigata	RLG00000021301 RLG00000029118 RLG00000029172 RLG00000029191
rosa_multiflora	Rmu_co8023038.1_g000001 Rmu_sc0001993.1_g000024 Rmu_sc0004502.1_g000002 Rmu_sc0011563.1_g000011
rosa_roxburghii	Rroxscaffold_2G00088520 Rroxscaffold_2G00088540 Rroxscaffold_2G00118030 Rroxscaffold_3G00231880 Rroxscaffold_4G00313190 Rroxscaffold_4G00313220 Rroxscaffold_7G00197130
rosa_rugosa	Rorug01G0146200.1 Rorug02G0492600
rosa_samantha	Rh1AG162400 Rh1AG162900 Rh1AG163800 Rh1AG164600 Rh1BG129700 Rh1CG152900 Rh1CG153400 Rh2AG558200 Rh2AG558300 Rh2CG541900 Rh2CG542300 Rh2DG581000 Rh2DG581900 Rh3CG249700
rosa_wichuraiana	Rw1G013300 Rw1G013340 Rw1G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	139
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgsI	TTSAA	2 cut(s)	187, 247
AsuC2I	CCSGG	2 cut(s)	34, 44
BccI	CCATC	4 cut(s)	67, 124, 185, 200
BclI	TGATCA	1 cut(s)	174
BcnI	CCSGG	2 cut(s)	34, 44
BfaI	CTAG	1 cut(s)	262
Bme1390I	CCNGG	2 cut(s)	34, 44
BmrFI	CCNGG	2 cut(s)	34, 44
BpuMI	CCSGG	2 cut(s)	34, 44
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse1I	ACTGG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseNI	ACTGG	1 cut(s)	256
BseRI	GAGGAG	2 cut(s)	116, 240
BseYI	CCCAGC	1 cut(s)	4
BsiSI	CCGG	2 cut(s)	33, 44
BslI	CCNNNNNNNGG	1 cut(s)	49
Bsp143I	GATC	1 cut(s)	174
BspACI	CCGC	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	256
BssMI	GATC	1 cut(s)	174
BstKTI	GATC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstSCI	CCNGG	2 cut(s)	32, 42
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	177
CviAII	CATG	1 cut(s)	221
CviJI	RGCY	3 cut(s)	10, 32, 148
CviKI_1	RGCY	3 cut(s)	10, 32, 148
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
EciI	GGCGGA	1 cut(s)	154
FaeI	CATG	1 cut(s)	224
FaiI	YATR	3 cut(s)	65, 165, 222
FatI	CATG	1 cut(s)	220
FbaI	TGATCA	1 cut(s)	174
FspBI	CTAG	1 cut(s)	262
GsaI	CCCAGC	1 cut(s)	8
HapII	CCGG	2 cut(s)	33, 44
Hin1II	CATG	1 cut(s)	224
HinfI	GANTC	2 cut(s)	104, 142
HpaII	CCGG	2 cut(s)	33, 44
Hpy188I	TCNGA	1 cut(s)	91
HpyAV	CCTTC	2 cut(s)	159, 191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
Hsp92II	CATG	1 cut(s)	224
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	174
LpnPI	CCDG	2 cut(s)	46, 57
MaeI	CTAG	1 cut(s)	262
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	1 cut(s)	109
MluCI	AATT	1 cut(s)	181
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	5 cut(s)	78, 94, 105, 129, 218
MspI	CCGG	2 cut(s)	33, 44
MspR9I	CCNGG	2 cut(s)	34, 44
MwoI	GCNNNNNNNGC	1 cut(s)	145
NciI	CCSGG	2 cut(s)	34, 44
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	1 cut(s)	224
NmuCI	GTSAC	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	142
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PspFI	CCCAGC	1 cut(s)	4
Sau3AI	GATC	1 cut(s)	174
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	2 cut(s)	34, 44
SetI	ASST	3 cut(s)	89, 116, 202
SgeI	CNNG	8 cut(s)	17, 27, 45, 46, 55, 56, 233, 259
Sse9I	AATT	1 cut(s)	181
SsiI	CCGC	1 cut(s)	139
SspI	AATATT	1 cut(s)	97
SspMI	CTAG	1 cut(s)	262
StyD4I	CCNGG	2 cut(s)	32, 42
TaqI	TCGA	1 cut(s)	120
TasI	AATT	1 cut(s)	181
TfiI	GAWTC	1 cut(s)	142
TscAI	CASTG	1 cut(s)	177
TseFI	GTSAC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	1 cut(s)	209
TspRI	CASTG	1 cut(s)	177
XspI	CTAG	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.