Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001513

Physical Location & Seq

Genomic Coordinates Forward (+)

34631707 .. 34632054

Gene Structure 348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56944

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGCTGGGGCTGTTTGGGGAAATGAAGGAAGCTGGGATTGACCCGGATTTGGTTTCTTACAATACAGTGATAAACCATGTGAGGAAGTTTGGGGAAGTTGATATGTGCTTGTTGTATTTCAAGGAAATGTGTGAAAAGGGTGTTCAGCCTGATTTGCTTCCTTACACTGCAGTCATTGATGGGTTGGGGAGGTCAGGAAGCATTGAGGAGTCGTTGAAGTTGTTTGGTGAGATGAAGGAGAGGAGGATTCGGCCTTCGTTGTATCTTTATAGAGCAGTGATTAGTAATTTGAAGAAGATGGGGAAGGTGGAGATGGCGGCGAGTTTTATGGAGGAGATGAATTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

115

Amino Acids

13.05

Weight (kDa)

5.46

Isoelectric Point (pI)

28.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	15 - 63	5.7e-11	PPR repeat family
PPR_3	PF13812	40 - 95	5.9e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	46 - 79	1.8e-06	PPR repeat
PPR_2	PF13041	55 - 97	8.2e-08	PPR repeat family
PPR	PF01535	55 - 83	1.1e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11900
fragaria_vesca	FvH4_6g24020 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44590 FvH4_6g44670 FvH4_6g44670 FvH4_6g44670
malus_domestica	MD14G1065400.v1.1 MD17G1084400.v1.1
prunus_persica	Prupe.3G231200_v2.0.a1
pyrus_communis	pycom17g08150
rosa_chinensis	RchiOBHm_Chr1g0342741 RchiOBHm_Chr1g0342831 RchiOBHm_Chr2g0161831
rosa_laevigata	RLG00000021301 RLG00000029118 RLG00000029172 RLG00000029191
rosa_multiflora	Rmu_co8023038.1_g000001 Rmu_sc0001993.1_g000024 Rmu_sc0004502.1_g000002 Rmu_sc0011563.1_g000011
rosa_roxburghii	Rroxscaffold_2G00088520 Rroxscaffold_2G00088540 Rroxscaffold_2G00118030 Rroxscaffold_3G00231880 Rroxscaffold_4G00313190 Rroxscaffold_4G00313220 Rroxscaffold_7G00197130
rosa_rugosa	Rorug01G0146200.1 Rorug02G0492600
rosa_samantha	Rh1AG162400 Rh1AG162900 Rh1AG163800 Rh1AG164600 Rh1BG129700 Rh1CG152900 Rh1CG153400 Rh2AG558200 Rh2AG558300 Rh2CG541900 Rh2CG542300 Rh2DG581000 Rh2DG581900 Rh3CG249700
rosa_wichuraiana	Rw1G013300 Rw1G013340 Rw1G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	317
AcsI	RAATTY	1 cut(s)	340
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgsI	TTSAA	3 cut(s)	121, 217, 292
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
AoxI	GGCC	1 cut(s)	251
ApoI	RAATTY	1 cut(s)	340
AsuC2I	CCSGG	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	239
BccI	CCATC	3 cut(s)	173, 292, 307
BcnI	CCSGG	1 cut(s)	44
BfmI	CTRYAG	1 cut(s)	168
BisI	GCNGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	319
Bme1390I	CCNGG	1 cut(s)	44
BmrFI	CCNGG	1 cut(s)	44
BpuMI	CCSGG	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseRI	GAGGAG	3 cut(s)	221, 256, 347
BseYI	CCCAGC	2 cut(s)	4, 32
BshFI	GGCC	1 cut(s)	253
BsiSI	CCGG	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	49
BsnI	GGCC	1 cut(s)	253
BspACI	CCGC	1 cut(s)	317
BspANI	GGCC	1 cut(s)	253
BspMAI	CTGCAG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	67
BstMWI	GCNNNNNNNGC	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	42
BstSFI	CTRYAG	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	253
BtsI	GCAGTG	2 cut(s)	165, 282
BtsIMutI	CAGTG	3 cut(s)	72, 165, 282
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	4 cut(s)	10, 32, 148, 253
CviKI_1	RGCY	4 cut(s)	10, 32, 148, 253
EcoRI	GAATTC	1 cut(s)	340
FaeI	CATG	1 cut(s)	80
FaiI	YATR	4 cut(s)	78, 104, 270, 329
FatI	CATG	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	318
Fsp4HI	GCNGC	1 cut(s)	318
GluI	GCNGC	1 cut(s)	318
GsaI	CCCAGC	2 cut(s)	8, 36
HaeIII	GGCC	1 cut(s)	253
HapII	CCGG	1 cut(s)	44
Hin1II	CATG	1 cut(s)	80
HinfI	GANTC	2 cut(s)	209, 247
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	1 cut(s)	239
Hpy188III	TCNNGA	2 cut(s)	195, 345
HpyAV	CCTTC	4 cut(s)	19, 229, 264, 298
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4V	TGCA	1 cut(s)	170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	154
Hsp92II	CATG	1 cut(s)	80
LpnPI	CCDG	4 cut(s)	18, 57, 162, 180
MboII	GAAGA	2 cut(s)	304, 307
MluCI	AATT	2 cut(s)	286, 340
MlyI	GAGTC	1 cut(s)	218
MnlI	CCTC	6 cut(s)	75, 183, 199, 234, 237, 325
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	1 cut(s)	154
NciI	CCSGG	1 cut(s)	44
NlaIII	CATG	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	247
PkrI	GCNGC	1 cut(s)	319
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
PspFI	CCCAGC	2 cut(s)	4, 32
PstI	CTGCAG	1 cut(s)	172
SatI	GCNGC	1 cut(s)	318
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	44
SetI	ASST	3 cut(s)	34, 194, 309
SfcI	CTRYAG	1 cut(s)	168
Sse9I	AATT	2 cut(s)	286, 340
SsiI	CCGC	1 cut(s)	317
StyD4I	CCNGG	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	67
TasI	AATT	2 cut(s)	286, 340
TauI	GCSGC	1 cut(s)	320
TfiI	GAWTC	1 cut(s)	247
TscAI	CASTG	3 cut(s)	72, 172, 282
TspDTI	ATGAA	2 cut(s)	38, 248
TspRI	CASTG	3 cut(s)	72, 172, 282
XapI	RAATTY	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.