AT1G12050

Fumarylacetoacetase N-terminal

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
4072741 .. 4076207
3467 bp
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UTR
Exon/CDS
Intron
AT1G12050.1

Sequence Viewer

Length: 1266 bp
ATGGCGTTGCTGAAGTCTTTCATCGATGTTGGCTCAGACTCGCACTTCCCTATCCAGAATCTCCCTTATGGTGTCTTCAAACCGGAATCGAACTCAACTCCTCGTCCTGCCGTCGCTATCGGCGATTTGGTTCTGGACCTCTCCGCTATCTCTGAAGCTGGGCTTTTCGATGGTCTGATCCTTAAGGACGCAGATTGCTTTCTTCAGCCTAATTTGAATAAGTTCTTGGCCATGGGACGGCCTGCGTGGAAGGAAGCGCGTTCTACGCTGCAAAGAATCTTGTCATCTAATGAACCTATCTTGCGAGACAATGATGTTTTGAGGAGAAAATCATTCCATCAGATGAGTAAAGTGGAAATGATTGTTCCTATGGTGATTGGGGACTATACAGACTTCTTTGCATCTATGCATCACGCGAAGAACTGCGGACTTATGTTCCGTGGGCCTGAGAATGCGATAAACCCAAATTGGTTTCGTCTTCCCATTGCATATCATGGACGGGCATCATCTATTGTCATCTCTGGGACTGACATTATTCGACCAAGAGGTCAGGGCCATCCACAAGGAAACTCTGAACCATATTTTGGACCTTCGAAGAAACTTGATTTTGAGCTTGAGATGGCTGCTGTGGTTGGTCCAGGAAATGAATTGGGAAAGCCTATTGACGTGAATAATGCAGCCGATCATATATTTGGTCTATTACTGATGAATGACTGGAGTGCTAGGGATATTCAGGCGTGGGAGTATGTACCTCTTGGTCCTTTCCTGGGGAAGAGTTTTGGGACTACTATATCCCCTTGGATTGTTACCTTGGATGCGCTTGAGCCTTTTGGTTGTCAAGCTCCCAAGCAGGATCCACCTCCATTGCCATATTTGGCTGAGAAAGAGTCTGTAAATTACGATATCTCCTTGGAGGTTCAACTTAAACCTTCTGGCAGAGATGATTCTTGTGTAATAACAAAGAGCAACTTCCAAAACTTATATTGGACCATAACGCAGCAGCTAGCACACCATACCGTTAACGGTTGCAATTTGAGGCCTGGTGATCTCCTTGGCACAGGAACCATAAGCGGACCGGAGCCAGATTCATATGGGTGCCTACTTGAGTTGACATGGAATGGACAGAAACCTCTATCACTCAATGGAACAACTCAGACGTTTCTCGAAGACGGAGACCAAGTCACCTTCTCAGGTGTATGCAAGGGAGATGGTTACAATGTTGGGTTTGGAACATGCACAGGGAAAATTGTTCCTTCACCGCCTTGA

Protein Analysis

421

Amino Acids

46.09

Weight (kDa)

5.31

Isoelectric Point (pI)

33.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAA_hydrolase_N PF09298 19 - 123 1.8e-33 Fumarylacetoacetase N-terminal
FAA_hydrolase PF01557 131 - 416 3.1e-39 Fumarylacetoacetate (FAA) hydrolase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 546
AccB1I GGYRCC 1 cut(s) 1095
AccB7I CCANNNNNTGG 1 cut(s) 584
AccII CGCG 2 cut(s) 259, 416
AciI CCGC 4 cut(s) 144, 426, 1071, 1259
AclWI GGATC 3 cut(s) 172, 848, 861
AcoI YGGCCR 1 cut(s) 228
AcuI CTGAAG 3 cut(s) 32, 174, 188
AfaI GTAC 1 cut(s) 750
AfiI CCNNNNNNNGG 3 cut(s) 237, 584, 767
AflII CTTAAG 1 cut(s) 182
AgsI TTSAA 3 cut(s) 79, 217, 920
AjiI CACGTC 1 cut(s) 667
AjnI CCWGG 3 cut(s) 637, 765, 1039
AjuI GAANNNNNNNTTGG 4 cut(s) 209, 241, 567, 599
AluBI AGCT 4 cut(s) 158, 613, 842, 1003
AluI AGCT 4 cut(s) 158, 613, 842, 1003
Alw26I GTCTC 2 cut(s) 300, 1167
AlwI GGATC 3 cut(s) 172, 848, 861
AoxI GGCC 5 cut(s) 228, 239, 443, 553, 1037
ApeKI GCWGC 5 cut(s) 268, 623, 677, 997, 1000
Asp700I GAANNNNTTC 2 cut(s) 17, 221
AspLEI GCGC 2 cut(s) 259, 820
AspS9I GGNCC 8 cut(s) 136, 443, 553, 587, 635, 758, 987, 1073
AsuHPI GGTGA 4 cut(s) 385, 1055, 1174, 1248
AsuII TTCGAA 1 cut(s) 593
AsuNHI GCTAGC 1 cut(s) 1003
AvaII GGWCC 6 cut(s) 136, 587, 635, 758, 987, 1073
BalI TGGCCA 1 cut(s) 230
BamHI GGATCC 1 cut(s) 853
BanI GGYRCC 1 cut(s) 1095
BbsI GAAGAC 3 cut(s) 67, 470, 1173
BbvI GCAGC 5 cut(s) 255, 610, 689, 1009, 1012
BccI CCATC 5 cut(s) 164, 345, 564, 613, 1202
BceAI ACGGC 2 cut(s) 95, 254
BciT130I CCWGG 3 cut(s) 639, 767, 1041
BcoDI GTCTC 2 cut(s) 300, 1167
BfaI CTAG 2 cut(s) 723, 1004
BfrI CTTAAG 1 cut(s) 182
BisI GCNGC 5 cut(s) 269, 624, 678, 998, 1001
BlsI GCNGC 5 cut(s) 270, 625, 679, 999, 1002
Bme1390I CCNGG 3 cut(s) 639, 767, 1041
Bme18I GGWCC 6 cut(s) 136, 587, 635, 758, 987, 1073
BmgBI CACGTC 1 cut(s) 667
BmgT120I GGNCC 8 cut(s) 136, 443, 553, 587, 635, 758, 987, 1073
BmiI GGNNCC 4 cut(s) 855, 1063, 1080, 1097
BmrFI CCNGG 3 cut(s) 639, 767, 1041
BmsI GCATC 4 cut(s) 410, 418, 512, 805
BmtI GCTAGC 1 cut(s) 1007
BpiI GAAGAC 3 cut(s) 67, 470, 1173
BpmI CTGGAG 1 cut(s) 736
Bpu14I TTCGAA 1 cut(s) 593
BpuEI CTTGAG 3 cut(s) 635, 842, 1124
Bsa29I ATCGAT 1 cut(s) 24
BsaI GGTCTC 1 cut(s) 1167
BsaJI CCNNGG 7 cut(s) 231, 439, 766, 797, 810, 909, 1051
BsaWI WCCGGW 2 cut(s) 82, 1075
BsaXI ACNNNNNCTCC 4 cut(s) 890, 920, 1164, 1194
Bsc4I CCNNNNNNNGG 3 cut(s) 237, 584, 767
Bse1I ACTGG 1 cut(s) 719
Bse3DI GCAATG 2 cut(s) 483, 863
BseBI CCWGG 3 cut(s) 639, 767, 1041
BseCI ATCGAT 1 cut(s) 24
BseDI CCNNGG 7 cut(s) 231, 439, 766, 797, 810, 909, 1051
BseGI GGATG 2 cut(s) 556, 820
BseLI CCNNNNNNNGG 3 cut(s) 237, 584, 767
BseMI GCAATG 2 cut(s) 483, 863
BseMII CTCAG 5 cut(s) 48, 438, 870, 1166, 1203
BseNI ACTGG 1 cut(s) 719
BseRI GAGGAG 2 cut(s) 90, 337
BseXI GCAGC 5 cut(s) 255, 610, 689, 1009, 1012
BseYI CCCAGC 1 cut(s) 158
Bsh1236I CGCG 2 cut(s) 259, 416
BshFI GGCC 5 cut(s) 230, 241, 445, 555, 1039
BshNI GGYRCC 1 cut(s) 1095
BshVI ATCGAT 1 cut(s) 24
BsiSI CCGG 2 cut(s) 83, 1076
BslFI GGGAC 4 cut(s) 249, 395, 538, 796
BslI CCNNNNNNNGG 3 cut(s) 237, 584, 767
BsmAI GTCTC 2 cut(s) 300, 1167
BsmFI GGGAC 4 cut(s) 249, 395, 538, 796
BsmI GAATGC 1 cut(s) 457
BsnI GGCC 5 cut(s) 230, 241, 445, 555, 1039
Bso31I GGTCTC 1 cut(s) 1167
Bsp119I TTCGAA 1 cut(s) 593
Bsp143I GATC 4 cut(s) 177, 682, 853, 1045
Bsp19I CCATGG 1 cut(s) 231
BspACI CCGC 4 cut(s) 144, 426, 1071, 1259
BspANI GGCC 5 cut(s) 230, 241, 445, 555, 1039
BspCNI CTCAG 5 cut(s) 47, 439, 871, 1165, 1202
BspDI ATCGAT 1 cut(s) 24
BspFNI CGCG 2 cut(s) 259, 416
BspLI GGNNCC 4 cut(s) 855, 1063, 1080, 1097
BspOI GCTAGC 1 cut(s) 1007
BspPI GGATC 3 cut(s) 172, 848, 861
BspT104I TTCGAA 1 cut(s) 593
BspT107I GGYRCC 1 cut(s) 1095
BspTI CTTAAG 1 cut(s) 182
BspTNI GGTCTC 1 cut(s) 1167
BsrDI GCAATG 2 cut(s) 483, 863
BsrI ACTGG 1 cut(s) 719
BssECI CCNNGG 7 cut(s) 231, 439, 766, 797, 810, 909, 1051
BssMI GATC 4 cut(s) 177, 682, 853, 1045
BssT1I CCWWGG 5 cut(s) 231, 797, 810, 909, 1051
Bst2UI CCWGG 3 cut(s) 639, 767, 1041
Bst4CI ACNGT 2 cut(s) 1018, 1025
Bst6I CTCTTC 1 cut(s) 767
BstAFI CTTAAG 1 cut(s) 182
BstBI TTCGAA 1 cut(s) 593
BstC8I GCNNGC 2 cut(s) 243, 1005
BstDEI CTNAG 5 cut(s) 34, 447, 879, 1152, 1189
BstDSI CCRYGG 2 cut(s) 231, 439
BstF5I GGATG 2 cut(s) 556, 820
BstFNI CGCG 2 cut(s) 259, 416
BstHHI GCGC 2 cut(s) 259, 820
BstKTI GATC 4 cut(s) 180, 685, 856, 1048
BstMAI GTCTC 2 cut(s) 300, 1167
BstMBI GATC 4 cut(s) 177, 682, 853, 1045
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstNI CCWGG 3 cut(s) 639, 767, 1041
BstNSI RCATGY 1 cut(s) 1236
BstSCI CCNGG 3 cut(s) 637, 765, 1039
BstUI CGCG 2 cut(s) 259, 416
BstV1I GCAGC 5 cut(s) 255, 610, 689, 1009, 1012
BstV2I GAAGAC 3 cut(s) 67, 470, 1173
BstX2I RGATCY 1 cut(s) 853
BstYI RGATCY 1 cut(s) 853
Bsu15I ATCGAT 1 cut(s) 24
BsuRI GGCC 5 cut(s) 230, 241, 445, 555, 1039
BsuTUI ATCGAT 1 cut(s) 24
BtgI CCRYGG 2 cut(s) 231, 439
BtrI CACGTC 1 cut(s) 667
BtsCI GGATG 2 cut(s) 556, 820
Cac8I GCNNGC 2 cut(s) 243, 1005
CfoI GCGC 2 cut(s) 259, 820
Cfr13I GGNCC 8 cut(s) 136, 443, 553, 587, 635, 758, 987, 1073
ClaI ATCGAT 1 cut(s) 24
CpoI CGGWCCG 1 cut(s) 1073
CseI GACGC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 749
CspCI CAANNNNNGTGG 2 cut(s) 846, 881
CspI CGGWCCG 1 cut(s) 1073
CviAII CATG 4 cut(s) 232, 494, 1113, 1233
CviQI GTAC 1 cut(s) 749
DdeI CTNAG 5 cut(s) 34, 447, 879, 1152, 1189
DpnI GATC 4 cut(s) 179, 684, 855, 1047
DpnII GATC 4 cut(s) 177, 682, 853, 1045
DrdI GACNNNNNNGTC 1 cut(s) 546
DseDI GACNNNNNNGTC 1 cut(s) 546
EaeI YGGCCR 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 767
EarI CTCTTC 1 cut(s) 767
Eco130I CCWWGG 5 cut(s) 231, 797, 810, 909, 1051
Eco147I AGGCCT 1 cut(s) 1039
Eco31I GGTCTC 1 cut(s) 1167
Eco32I GATATC 1 cut(s) 904
Eco47I GGWCC 6 cut(s) 136, 587, 635, 758, 987, 1073
Eco57I CTGAAG 3 cut(s) 32, 174, 188
EcoRII CCWGG 3 cut(s) 637, 765, 1039
EcoRV GATATC 1 cut(s) 904
EcoT14I CCWWGG 5 cut(s) 231, 797, 810, 909, 1051
EcoT22I ATGCAT 1 cut(s) 411
ErhI CCWWGG 5 cut(s) 231, 797, 810, 909, 1051
FaeI CATG 4 cut(s) 235, 497, 1116, 1236
FalI AAGNNNNNCTT 4 cut(s) 147, 179, 953, 985
FaqI GGGAC 4 cut(s) 249, 395, 538, 796
FatI CATG 4 cut(s) 231, 493, 1112, 1232
FauNDI CATATG 1 cut(s) 1090
Fnu4HI GCNGC 5 cut(s) 269, 624, 678, 998, 1001
FokI GGATG 2 cut(s) 543, 827
Fsp4HI GCNGC 5 cut(s) 269, 624, 678, 998, 1001
FspBI CTAG 2 cut(s) 723, 1004
GlaI GCGC 2 cut(s) 258, 819
GluI GCNGC 5 cut(s) 269, 624, 678, 998, 1001
GsaI CCCAGC 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 736
HaeIII GGCC 5 cut(s) 230, 241, 445, 555, 1039
HapII CCGG 2 cut(s) 83, 1076
HgaI GACGC 1 cut(s) 197
HhaI GCGC 2 cut(s) 259, 820
Hin1II CATG 4 cut(s) 235, 497, 1116, 1236
Hin6I GCGC 2 cut(s) 257, 818
HinP1I GCGC 2 cut(s) 257, 818
HincII GTYRAC 2 cut(s) 1021, 1110
HindII GTYRAC 2 cut(s) 1021, 1110
HinfI GANTC 7 cut(s) 38, 58, 86, 276, 887, 944, 1085
HpaI GTTAAC 1 cut(s) 1021
HpaII CCGG 2 cut(s) 83, 1076
HphI GGTGA 4 cut(s) 385, 1055, 1174, 1248
Hpy166II GTNNAC 2 cut(s) 1021, 1110
Hpy188I TCNGA 6 cut(s) 37, 154, 177, 342, 574, 1155
Hpy188III TCNNGA 3 cut(s) 55, 134, 1163
Hpy8I GTNNAC 2 cut(s) 1021, 1110
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 5 cut(s) 244, 600, 939, 1195, 1263
HpyCH4III ACNGT 2 cut(s) 1018, 1025
HpyCH4IV ACGT 2 cut(s) 666, 1157
HpyCH4V TGCA 8 cut(s) 271, 401, 409, 488, 677, 1029, 1200, 1236
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
HpyF3I CTNAG 5 cut(s) 34, 447, 879, 1152, 1189
HpySE526I ACGT 2 cut(s) 666, 1157
Hsp92II CATG 4 cut(s) 235, 497, 1116, 1236
HspAI GCGC 2 cut(s) 257, 818
KspAI GTTAAC 1 cut(s) 1021
Kzo9I GATC 4 cut(s) 177, 682, 853, 1045
LmnI GCTCC 2 cut(s) 847, 1078
Lsp1109I GCAGC 5 cut(s) 255, 610, 689, 1009, 1012
LweI GCATC 4 cut(s) 410, 418, 512, 805
MaeI CTAG 2 cut(s) 723, 1004
MaeII ACGT 2 cut(s) 666, 1157
MaeIII GTNAC 3 cut(s) 805, 1180, 1211
MalI GATC 4 cut(s) 179, 684, 855, 1047
MboI GATC 4 cut(s) 177, 682, 853, 1045
MboII GAAGA 7 cut(s) 67, 194, 430, 470, 607, 784, 1178
MflI RGATCY 1 cut(s) 853
MlsI TGGCCA 1 cut(s) 230
MluCI AATT 6 cut(s) 211, 466, 647, 895, 1030, 1245
MluNI TGGCCA 1 cut(s) 230
MlyI GAGTC 2 cut(s) 32, 896
MnlI CCTC 9 cut(s) 111, 149, 315, 539, 762, 870, 907, 1029, 1140
Mox20I TGGCCA 1 cut(s) 230
Mph1103I ATGCAT 1 cut(s) 411
MroXI GAANNNNTTC 2 cut(s) 17, 221
MscI TGGCCA 1 cut(s) 230
MseI TTAA 3 cut(s) 183, 924, 1020
MslI CAYNNNNRTG 1 cut(s) 1093
Msp20I TGGCCA 1 cut(s) 230
MspCI CTTAAG 1 cut(s) 182
MspI CCGG 2 cut(s) 83, 1076
MspR9I CCNGG 3 cut(s) 639, 767, 1041
Mva1269I GAATGC 1 cut(s) 457
MvaI CCWGG 3 cut(s) 639, 767, 1041
MvnI CGCG 2 cut(s) 259, 416
MwoI GCNNNNNNNGC 1 cut(s) 265
NcoI CCATGG 1 cut(s) 231
NdeI CATATG 1 cut(s) 1090
NdeII GATC 4 cut(s) 177, 682, 853, 1045
NheI GCTAGC 1 cut(s) 1003
NlaIII CATG 4 cut(s) 235, 497, 1116, 1236
NlaIV GGNNCC 4 cut(s) 855, 1063, 1080, 1097
NmuCI GTSAC 1 cut(s) 1180
NsiI ATGCAT 1 cut(s) 411
NspI RCATGY 1 cut(s) 1236
NspV TTCGAA 1 cut(s) 593
PceI AGGCCT 1 cut(s) 1039
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PctI GAATGC 1 cut(s) 457
PdmI GAANNNNTTC 2 cut(s) 17, 221
PfeI GAWTC 5 cut(s) 58, 86, 276, 944, 1085
PflFI GACNNNGTC 1 cut(s) 1178
PflMI CCANNNNNTGG 1 cut(s) 584
PfoI TCCNGGA 1 cut(s) 637
PkrI GCNGC 5 cut(s) 270, 625, 679, 999, 1002
PleI GAGTC 2 cut(s) 32, 895
PpsI GAGTC 2 cut(s) 32, 895
Psp6I CCWGG 3 cut(s) 637, 765, 1039
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 3 cut(s) 637, 765, 1039
PspN4I GGNNCC 4 cut(s) 855, 1063, 1080, 1097
PspPI GGNCC 8 cut(s) 136, 443, 553, 587, 635, 758, 987, 1073
PsuI RGATCY 1 cut(s) 853
PsyI GACNNNGTC 1 cut(s) 1178
RsaI GTAC 1 cut(s) 750
RsaNI GTAC 1 cut(s) 749
RseI CAYNNNNRTG 1 cut(s) 1093
Rsr2I CGGWCCG 1 cut(s) 1073
RsrII CGGWCCG 1 cut(s) 1073
SaqAI TTAA 3 cut(s) 183, 924, 1020
SatI GCNGC 5 cut(s) 269, 624, 678, 998, 1001
Sau3AI GATC 4 cut(s) 177, 682, 853, 1045
Sau96I GGNCC 8 cut(s) 136, 443, 553, 587, 635, 758, 987, 1073
SchI GAGTC 2 cut(s) 32, 896
ScrFI CCNGG 3 cut(s) 639, 767, 1041
SfaNI GCATC 4 cut(s) 410, 418, 512, 805
SfuI TTCGAA 1 cut(s) 593
SinI GGWCC 6 cut(s) 136, 587, 635, 758, 987, 1073
SmiMI CAYNNNNRTG 1 cut(s) 1093
SmlI CTYRAG 4 cut(s) 182, 614, 821, 1103
SmoI CTYRAG 4 cut(s) 182, 614, 821, 1103
Sse9I AATT 6 cut(s) 211, 466, 647, 895, 1030, 1245
SseBI AGGCCT 1 cut(s) 1039
SsiI CCGC 4 cut(s) 144, 426, 1071, 1259
SspMI CTAG 2 cut(s) 723, 1004
StuI AGGCCT 1 cut(s) 1039
StyD4I CCNGG 3 cut(s) 637, 765, 1039
StyI CCWWGG 5 cut(s) 231, 797, 810, 909, 1051
TaaI ACNGT 2 cut(s) 1018, 1025
TaiI ACGT 2 cut(s) 669, 1160
TaqI TCGA 6 cut(s) 24, 89, 168, 538, 593, 1164
TasI AATT 6 cut(s) 211, 466, 647, 895, 1030, 1245
TfiI GAWTC 5 cut(s) 58, 86, 276, 944, 1085
Tru1I TTAA 3 cut(s) 183, 924, 1020
Tru9I TTAA 3 cut(s) 183, 924, 1020
TseFI GTSAC 1 cut(s) 1180
TseI GCWGC 5 cut(s) 268, 623, 677, 997, 1000
Tsp45I GTSAC 1 cut(s) 1180
TspDTI ATGAA 5 cut(s) 10, 306, 660, 722, 1077
TspGWI ACGGA 2 cut(s) 428, 1185
Tth111I GACNNNGTC 1 cut(s) 1178
Van91I CCANNNNNTGG 1 cut(s) 584
Vha464I CTTAAG 1 cut(s) 182
VpaK11BI GGWCC 6 cut(s) 136, 587, 635, 758, 987, 1073
XceI RCATGY 1 cut(s) 1236
XmnI GAANNNNTTC 2 cut(s) 17, 221
XspI CTAG 2 cut(s) 723, 1004
Zsp2I ATGCAT 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.