Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040965.1

Orthogroup ID

OG0003811

Physical Location & Seq

Genomic Coordinates Reverse (-)

1891 .. 3251

Gene Structure 1361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040965.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

atgaagcgccgccctccgagcaacaccttgtatgacctttttcgttccttccgagaaaacaacccgattgatgacatccccttaccgaacctcccgagctctaacttcgttcatggaagtcgtcgacatcggaaaaactccgtgtccggcgtagctctcacttccttcatcgaagtcgacccgagctctcacttccccatacagaacctcccgttcggagtgttcaagccaaaaccggcttcaacggctcgaccgggcgtggccataggcgattatgtgttggacttgtcagcaatcgccgccgccggtctcttcaacggtccgatcctcagaaactccgattgcttttatcagcctaatttgaacaagttcttggccttgggacgacctgcttggaaggaagcacgtgctacacttcagaagctactttcatctactgagccaacattgcgtgacaatcaaagtttaaagcaggaatcacttattccgttgagcgaggtggaaatgctgcttcctgtggcgattggggactttacagacttcttttcatcaatggatcacgtacacgactgcggggccaagattaattgtaaggcaggtcaggcaattccactgaaatggtacgtgggtttagggtgtcacagcacagaaatttattcctgtatctttgatcgtttacaaattgaacaggttttatttcgtgttaggttggacctaccaattgcatatcatggacgagcttcgtcgattgttatctctggaactgacattactcgacccaggtcaatcagagacgtgtctcttgagacatttttacgtccaaggttggacctaccaattgcatatcatggacgagcttcgtcgattgttatctctggaactgacattactcgacccagttcaatcagagacgtgtctcttgagacatttttacgtccaaggtggggtgttgaacattgctcacttggtggtaatggttcatttctgaagaattggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004334 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016787 GO:0016822 GO:0016823 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0071704 GO:0072329 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

FAA_hydrolase FAA_hydrolase_N

Protein Analysis

332

Amino Acids

36.96

Weight (kDa)

9.16

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12050
fragaria_vesca	FvH4_3g01030
malus_domestica	MD10G1331100.v1.1
prunus_persica	Prupe.4G011100_v2.0.a1
pyrus_communis	pycom10g28060
rosa_chinensis	RchiOBHm_Chr3g0477951 RchiOBHm_Chr3g0484131 RchiOBHm_Chr5g0001571 RchiOBHm_Chr5g0003621
rosa_laevigata	RLG00000030938 RLG00000030942
rosa_multiflora	Rmu_co8093718.1_g000001 Rmu_sc0003749.1_g000003 Rmu_sc0005991.1_g000008 Rmu_sc0006320.1_g000011 Rmu_sc0029518.1_g000002 Rmu_sc0040965.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074840
rosa_rugosa	Rorug02G0302800 Rorug03G0164100 Rorug04G0391100
rosa_samantha	Rh3AG214900 Rh3AG258900 Rh3BG248500 Rh3CG242500 Rh3DG241900 Rh5AG012300 Rh5BG014900 Rh5BG015100 Rh5CG013300 Rh5DG012600 Rh5DG012700
rosa_wichuraiana	Rw3G019370 Rw5G001170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	397, 587
AccI	GTMKAC	2 cut(s)	124, 177
AciI	CCGC	4 cut(s)	10, 300, 303, 573
AclWI	GGATC	2 cut(s)	319, 564
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	651
AcuI	CTGAAG	1 cut(s)	401
AcvI	CACGTG	1 cut(s)	407
AdeI	CACNNNGTG	1 cut(s)	968
AfaI	GTAC	2 cut(s)	564, 623
AfiI	CCNNNNNNNGG	1 cut(s)	944
AflIII	ACRYGT	2 cut(s)	795, 912
AgsI	TTSAA	7 cut(s)	226, 243, 316, 364, 686, 903, 953
AjiI	CACGTC	2 cut(s)	796, 913
AjnI	CCWGG	1 cut(s)	779
AjuI	GAANNNNNNNTTGG	4 cut(s)	223, 255, 356, 388
AluBI	AGCT	6 cut(s)	99, 155, 186, 424, 740, 857
AluI	AGCT	6 cut(s)	99, 155, 186, 424, 740, 857
Alw21I	GWGCWC	2 cut(s)	101, 188
Alw26I	GTCTC	7 cut(s)	314, 786, 800, 804, 903, 917, 921
AlwI	GGATC	2 cut(s)	319, 564
Ama87I	CYCGRG	2 cut(s)	94, 181
AoxI	GGCC	3 cut(s)	261, 375, 576
ApeKI	GCWGC	1 cut(s)	508
ApoI	RAATTY	1 cut(s)	651
AseI	ATTAAT	1 cut(s)	585
Asp700I	GAANNNNTTC	1 cut(s)	368
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	4 cut(s)	320, 576, 712, 829
AsuC2I	CCSGG	1 cut(s)	255
AvaI	CYCGRG	2 cut(s)	94, 181
AvaII	GGWCC	3 cut(s)	320, 712, 829
BaeI	ACNNNNGTAYC	2 cut(s)	613, 646
BalI	TGGCCA	1 cut(s)	263
BanII	GRGCYC	2 cut(s)	101, 188
BbrPI	CACGTG	1 cut(s)	407
Bbv12I	GWGCWC	2 cut(s)	101, 188
BbvI	GCAGC	1 cut(s)	495
BceAI	ACGGC	1 cut(s)	261
BciT130I	CCWGG	1 cut(s)	781
BcnI	CCSGG	1 cut(s)	255
BcoDI	GTCTC	7 cut(s)	314, 786, 800, 804, 903, 917, 921
BfoI	RGCGCY	1 cut(s)	10
BfuAI	ACCTGC	2 cut(s)	397, 587
BisI	GCNGC	4 cut(s)	10, 300, 303, 509
BlsI	GCNGC	4 cut(s)	11, 301, 304, 510
Bme1390I	CCNGG	2 cut(s)	255, 781
Bme18I	GGWCC	3 cut(s)	320, 712, 829
BmeT110I	CYCGRG	2 cut(s)	94, 181
BmgBI	CACGTC	2 cut(s)	796, 913
BmgT120I	GGNCC	4 cut(s)	320, 576, 712, 829
BmiI	GGNNCC	1 cut(s)	577
BmrFI	CCNGG	2 cut(s)	255, 781
BmrI	ACTGGG	1 cut(s)	891
BmuI	ACTGGG	1 cut(s)	891
BoxI	GACNNNNGTC	1 cut(s)	781
BpuEI	CTTGAG	2 cut(s)	824, 941
BpuMI	CCSGG	1 cut(s)	255
BsaAI	YACGTR	3 cut(s)	407, 562, 625
BsaBI	GATNNNNATC	2 cut(s)	752, 869
BsaI	GGTCTC	1 cut(s)	314
BsaJI	CCNNGG	4 cut(s)	378, 779, 821, 938
BsaXI	ACNNNNNCTCC	4 cut(s)	75, 105, 192, 222
Bsc4I	CCNNNNNNNGG	1 cut(s)	944
Bse118I	RCCGGY	2 cut(s)	235, 305
Bse1I	ACTGG	1 cut(s)	897
Bse3DI	GCAATG	2 cut(s)	446, 955
Bse8I	GATNNNNATC	2 cut(s)	752, 869
BseBI	CCWGG	1 cut(s)	781
BseDI	CCNNGG	4 cut(s)	378, 779, 821, 938
BseGI	GGATG	1 cut(s)	75
BseJI	GATNNNNATC	2 cut(s)	752, 869
BseLI	CCNNNNNNNGG	1 cut(s)	944
BseMI	GCAATG	2 cut(s)	446, 955
BseMII	CTCAG	2 cut(s)	343, 429
BseNI	ACTGG	1 cut(s)	897
BseXI	GCAGC	1 cut(s)	495
Bsh1285I	CGRYCG	1 cut(s)	254
BshFI	GGCC	3 cut(s)	263, 377, 578
BsiEI	CGRYCG	1 cut(s)	254
BsiHKAI	GWGCWC	2 cut(s)	101, 188
BsiHKCI	CYCGRG	2 cut(s)	94, 181
BsiSI	CCGG	4 cut(s)	147, 236, 254, 306
BslFI	GGGAC	2 cut(s)	396, 542
BslI	CCNNNNNNNGG	1 cut(s)	944
BsmAI	GTCTC	7 cut(s)	314, 786, 800, 804, 903, 917, 921
BsmBI	CGTCTC	2 cut(s)	786, 903
BsmFI	GGGAC	2 cut(s)	396, 542
BsnI	GGCC	3 cut(s)	263, 377, 578
Bso31I	GGTCTC	1 cut(s)	314
BsoBI	CYCGRG	2 cut(s)	94, 181
Bsp1286I	GDGCHC	2 cut(s)	101, 188
Bsp143I	GATC	3 cut(s)	324, 556, 670
BspACI	CCGC	4 cut(s)	10, 300, 303, 573
BspANI	GGCC	3 cut(s)	263, 377, 578
BspCNI	CTCAG	2 cut(s)	342, 430
BspLI	GGNNCC	1 cut(s)	577
BspMI	ACCTGC	2 cut(s)	397, 587
BspPI	GGATC	2 cut(s)	319, 564
BspTNI	GGTCTC	1 cut(s)	314
BsrDI	GCAATG	2 cut(s)	446, 955
BsrFI	RCCGGY	2 cut(s)	235, 305
BsrI	ACTGG	1 cut(s)	897
BssAI	RCCGGY	2 cut(s)	235, 305
BssECI	CCNNGG	4 cut(s)	378, 779, 821, 938
BssMI	GATC	3 cut(s)	324, 556, 670
BssT1I	CCWWGG	3 cut(s)	378, 821, 938
Bst2UI	CCWGG	1 cut(s)	781
Bst4CI	ACNGT	1 cut(s)	320
Bst6I	CTCTTC	1 cut(s)	317
BstBAI	YACGTR	3 cut(s)	407, 562, 625
BstDEI	CTNAG	2 cut(s)	329, 438
BstF5I	GGATG	1 cut(s)	75
BstH2I	RGCGCY	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	3 cut(s)	327, 559, 673
BstMAI	GTCTC	7 cut(s)	314, 786, 800, 804, 903, 917, 921
BstMBI	GATC	3 cut(s)	324, 556, 670
BstMCI	CGRYCG	1 cut(s)	254
BstMWI	GCNNNNNNNGC	5 cut(s)	18, 245, 299, 448, 602
BstNI	CCWGG	1 cut(s)	781
BstPAI	GACNNNNGTC	1 cut(s)	781
BstSCI	CCNGG	2 cut(s)	253, 779
BstV1I	GCAGC	1 cut(s)	495
BstXI	CCANNNNNNTGG	1 cut(s)	618
BsuRI	GGCC	3 cut(s)	263, 377, 578
BtrI	CACGTC	2 cut(s)	796, 913
BtsCI	GGATG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	611
BveI	ACCTGC	2 cut(s)	397, 587
CfoI	GCGC	1 cut(s)	9
Cfr10I	RCCGGY	2 cut(s)	235, 305
Cfr13I	GGNCC	4 cut(s)	320, 576, 712, 829
CpoI	CGGWCCG	1 cut(s)	320
Csp6I	GTAC	2 cut(s)	563, 622
CspI	CGGWCCG	1 cut(s)	320
CviAII	CATG	3 cut(s)	113, 731, 848
CviQI	GTAC	2 cut(s)	563, 622
DdeI	CTNAG	2 cut(s)	329, 438
DpnI	GATC	3 cut(s)	326, 558, 672
DpnII	GATC	3 cut(s)	324, 556, 670
DraI	TTTAAA	1 cut(s)	468
DraIII	CACNNNGTG	1 cut(s)	968
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	317
Ecl136II	GAGCTC	2 cut(s)	99, 186
Eco130I	CCWWGG	3 cut(s)	378, 821, 938
Eco24I	GRGCYC	2 cut(s)	101, 188
Eco31I	GGTCTC	1 cut(s)	314
Eco47I	GGWCC	3 cut(s)	320, 712, 829
Eco53kI	GAGCTC	2 cut(s)	99, 186
Eco57I	CTGAAG	1 cut(s)	401
Eco72I	CACGTG	1 cut(s)	407
Eco88I	CYCGRG	2 cut(s)	94, 181
EcoICRI	GAGCTC	2 cut(s)	99, 186
EcoRII	CCWGG	1 cut(s)	779
EcoT14I	CCWWGG	3 cut(s)	378, 821, 938
EcoT38I	GRGCYC	2 cut(s)	101, 188
ErhI	CCWWGG	3 cut(s)	378, 821, 938
Esp3I	CGTCTC	2 cut(s)	786, 903
FaeI	CATG	3 cut(s)	116, 734, 851
FaiI	YATR	9 cut(s)	33, 114, 200, 266, 276, 727, 732, 844, 849
FaqI	GGGAC	2 cut(s)	396, 542
FatI	CATG	3 cut(s)	112, 730, 847
FauI	CCCGC	1 cut(s)	566
FblI	GTMKAC	2 cut(s)	124, 177
Fnu4HI	GCNGC	4 cut(s)	10, 300, 303, 509
FokI	GGATG	1 cut(s)	62
FriOI	GRGCYC	2 cut(s)	101, 188
Fsp4HI	GCNGC	4 cut(s)	10, 300, 303, 509
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	4 cut(s)	10, 300, 303, 509
HaeII	RGCGCY	1 cut(s)	10
HaeIII	GGCC	3 cut(s)	263, 377, 578
HapII	CCGG	4 cut(s)	147, 236, 254, 306
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	3 cut(s)	116, 734, 851
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HincII	GTYRAC	2 cut(s)	125, 178
HindII	GTYRAC	2 cut(s)	125, 178
HinfI	GANTC	1 cut(s)	476
HpaII	CCGG	4 cut(s)	147, 236, 254, 306
Hpy166II	GTNNAC	4 cut(s)	125, 178, 565, 677
Hpy188III	TCNNGA	5 cut(s)	94, 759, 803, 876, 920
Hpy8I	GTNNAC	4 cut(s)	125, 178, 565, 677
Hpy99I	CGWCG	3 cut(s)	126, 748, 865
HpyAV	CCTTC	3 cut(s)	58, 175, 391
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4IV	ACGT	7 cut(s)	406, 561, 624, 795, 817, 912, 934
HpyCH4V	TGCA	2 cut(s)	725, 842
HpyF10VI	GCNNNNNNNGC	5 cut(s)	18, 245, 299, 448, 602
HpyF3I	CTNAG	2 cut(s)	329, 438
HpySE526I	ACGT	7 cut(s)	406, 561, 624, 795, 817, 912, 934
Hsp92II	CATG	3 cut(s)	116, 734, 851
HspAI	GCGC	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	324, 556, 670
Lsp1109I	GCAGC	1 cut(s)	495
MaeII	ACGT	7 cut(s)	406, 561, 624, 795, 817, 912, 934
MaeIII	GTNAC	2 cut(s)	452, 638
MalI	GATC	3 cut(s)	326, 558, 672
MboI	GATC	3 cut(s)	324, 556, 670
MboII	GAAGA	1 cut(s)	304
MfeI	CAATTG	2 cut(s)	720, 837
MhlI	GDGCHC	2 cut(s)	101, 188
MlsI	TGGCCA	1 cut(s)	263
MluCI	AATT	8 cut(s)	358, 586, 606, 651, 681, 720, 837, 991
MluNI	TGGCCA	1 cut(s)	263
MmeI	TCCRAC	3 cut(s)	261, 690, 807
MnlI	CCTC	5 cut(s)	24, 101, 218, 338, 490
Mox20I	TGGCCA	1 cut(s)	263
MroXI	GAANNNNTTC	1 cut(s)	368
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	2 cut(s)	467, 585
MslI	CAYNNNNRTG	1 cut(s)	616
Msp20I	TGGCCA	1 cut(s)	263
MspI	CCGG	4 cut(s)	147, 236, 254, 306
MspR9I	CCNGG	2 cut(s)	255, 781
MunI	CAATTG	2 cut(s)	720, 837
MvaI	CCWGG	1 cut(s)	781
MwoI	GCNNNNNNNGC	5 cut(s)	18, 245, 299, 448, 602
NciI	CCSGG	1 cut(s)	255
NdeII	GATC	3 cut(s)	324, 556, 670
NlaIII	CATG	3 cut(s)	116, 734, 851
NlaIV	GGNNCC	1 cut(s)	577
NmuCI	GTSAC	2 cut(s)	452, 638
PcsI	WCGNNNNNNNCGW	1 cut(s)	49
PdmI	GAANNNNTTC	1 cut(s)	368
PfeI	GAWTC	1 cut(s)	476
PkrI	GCNGC	4 cut(s)	11, 301, 304, 510
PmaCI	CACGTG	1 cut(s)	407
PmlI	CACGTG	1 cut(s)	407
Ppu21I	YACGTR	3 cut(s)	407, 562, 625
PshAI	GACNNNNGTC	1 cut(s)	781
PshBI	ATTAAT	1 cut(s)	585
Psp124BI	GAGCTC	2 cut(s)	101, 188
Psp6I	CCWGG	1 cut(s)	779
PspCI	CACGTG	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	779
PspN4I	GGNNCC	1 cut(s)	577
PspPI	GGNCC	4 cut(s)	320, 576, 712, 829
PsrI	GAACNNNNNNTAC	4 cut(s)	754, 786, 871, 903
RsaI	GTAC	2 cut(s)	564, 623
RsaNI	GTAC	2 cut(s)	563, 622
RseI	CAYNNNNRTG	1 cut(s)	616
Rsr2I	CGGWCCG	1 cut(s)	320
RsrII	CGGWCCG	1 cut(s)	320
SacI	GAGCTC	2 cut(s)	101, 188
SalI	GTCGAC	2 cut(s)	123, 176
SaqAI	TTAA	2 cut(s)	467, 585
SatI	GCNGC	4 cut(s)	10, 300, 303, 509
Sau3AI	GATC	3 cut(s)	324, 556, 670
Sau96I	GGNCC	4 cut(s)	320, 576, 712, 829
ScrFI	CCNGG	2 cut(s)	255, 781
SduI	GDGCHC	2 cut(s)	101, 188
SinI	GGWCC	3 cut(s)	320, 712, 829
SmiMI	CAYNNNNRTG	1 cut(s)	616
SmlI	CTYRAG	2 cut(s)	803, 920
SmoI	CTYRAG	2 cut(s)	803, 920
Sse9I	AATT	8 cut(s)	358, 586, 606, 651, 681, 720, 837, 991
SsiI	CCGC	4 cut(s)	10, 300, 303, 573
SstI	GAGCTC	2 cut(s)	101, 188
StyD4I	CCNGG	2 cut(s)	253, 779
StyI	CCWWGG	3 cut(s)	378, 821, 938
TaaI	ACNGT	1 cut(s)	320
TaiI	ACGT	7 cut(s)	409, 564, 627, 798, 820, 915, 937
TaqI	TCGA	8 cut(s)	124, 171, 177, 250, 746, 775, 863, 892
TasI	AATT	8 cut(s)	358, 586, 606, 651, 681, 720, 837, 991
TauI	GCSGC	3 cut(s)	12, 302, 305
TfiI	GAWTC	1 cut(s)	476
Tru1I	TTAA	2 cut(s)	467, 585
Tru9I	TTAA	2 cut(s)	467, 585
TscAI	CASTG	1 cut(s)	618
TseFI	GTSAC	2 cut(s)	452, 638
TseI	GCWGC	1 cut(s)	508
Tsp45I	GTSAC	2 cut(s)	452, 638
TspDTI	ATGAA	6 cut(s)	17, 101, 157, 420, 537, 969
TspGWI	ACGGA	2 cut(s)	130, 477
TspRI	CASTG	1 cut(s)	618
VpaK11BI	GGWCC	3 cut(s)	320, 712, 829
VspI	ATTAAT	1 cut(s)	585
XapI	RAATTY	1 cut(s)	651
XmiI	GTMKAC	2 cut(s)	124, 177
XmnI	GAANNNNTTC	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.