Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003811

Physical Location & Seq

Genomic Coordinates Reverse (-)

1089274 .. 1091297

Gene Structure 2024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG015100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCTGCTGTAGGCGGTCCTGGAAATGAATTAGGAAAGCCGGTGGATGTGAATGAGGCAGCAGATCATATTTTTGGACTTGTCTTGATGAATGACTGGAGTGCTAGAGATATCCAGGCATGGGAATATATTCCCCTTGGTCCTTTCCTTGGAAAAAGTTTTGGAACTACGATATCTCCTTGGATAGTGACACTCGAAGCTCTAGAACCATTTTCCTGTGATGCTCCCAAACAGGACCCCCATCCATTGCCCTATCTGGCTGAAAAGATCTCCAATAATTATGACATAACATTGGAGGTTCAAATTAAACCAGCTGGAGAGAAAGACTCATCTGTGGTCACAAAGAGTAATTTCAACCACTTATATTGGACAGTGACCCAGCAGCTGGCACATCATACAATCAATGGTTGCAACTTAAGGCCTGGAGATCTCCTTGGAACTGGGACCATTAGTGGACCTGAGCCAGAATCTTGTGGATGCTTGCTAGAGTTGACATGGAATGGACAAAAGCAGTTGTCATTAAATGGCGTTACTCGTAAATTCATTGAAGATGGAGATGAAGTCATCATTACTGGTTTTAGCAAGCCATTTCAGGAGAGTGTAAAGATTAGAAGTAACAAGGGCTCGCAAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004334 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016787 GO:0016822 GO:0016823 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0071704 GO:0072329 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

FAA_hydrolase FAA_hydrolase_N

Protein Analysis

211

Amino Acids

22.99

Weight (kDa)

4.97

Isoelectric Point (pI)

33.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAA_hydrolase	PF01557	15 - 189	8.6e-29	Fumarylacetoacetate (FAA) hydrolase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12050
fragaria_vesca	FvH4_3g01030
malus_domestica	MD10G1331100.v1.1
prunus_persica	Prupe.4G011100_v2.0.a1
pyrus_communis	pycom10g28060
rosa_chinensis	RchiOBHm_Chr3g0477951 RchiOBHm_Chr3g0484131 RchiOBHm_Chr5g0001571 RchiOBHm_Chr5g0003621
rosa_laevigata	RLG00000030938 RLG00000030942
rosa_multiflora	Rmu_co8093718.1_g000001 Rmu_sc0003749.1_g000003 Rmu_sc0005991.1_g000008 Rmu_sc0006320.1_g000011 Rmu_sc0029518.1_g000002 Rmu_sc0040965.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074840
rosa_rugosa	Rorug02G0302800 Rorug03G0164100 Rorug04G0391100
rosa_samantha	Rh3AG214900 Rh3AG258900 Rh3BG248500 Rh3CG242500 Rh3DG241900 Rh5AG012300 Rh5BG014900 Rh5BG015100 Rh5CG013300 Rh5DG012600 Rh5DG012700
rosa_wichuraiana	Rw3G019370 Rw5G001170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	385
AciI	CCGC	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	539
AfiI	CCNNNNNNNGG	3 cut(s)	121, 149, 385
AflII	CTTAAG	1 cut(s)	415
AgsI	TTSAA	3 cut(s)	302, 355, 548
AjnI	CCWGG	3 cut(s)	19, 114, 421
AluBI	AGCT	3 cut(s)	200, 314, 385
AluI	AGCT	3 cut(s)	200, 314, 385
AlwNI	CAGNNNCTG	1 cut(s)	385
AoxI	GGCC	1 cut(s)	419
ApeKI	GCWGC	3 cut(s)	5, 59, 382
ApoI	RAATTY	1 cut(s)	539
Asp700I	GAANNNNTTC	1 cut(s)	129
AspS9I	GGNCC	5 cut(s)	17, 140, 235, 444, 455
AvaII	GGWCC	5 cut(s)	17, 140, 235, 444, 455
BanII	GRGCYC	1 cut(s)	626
BbvI	GCAGC	2 cut(s)	71, 394
BccI	CCATC	2 cut(s)	249, 545
BciT130I	CCWGG	3 cut(s)	21, 116, 423
BfaI	CTAG	3 cut(s)	105, 203, 485
BfmI	CTRYAG	1 cut(s)	9
BfrI	CTTAAG	1 cut(s)	415
BglII	AGATCT	2 cut(s)	267, 427
BisI	GCNGC	3 cut(s)	6, 60, 383
BlsI	GCNGC	3 cut(s)	7, 61, 384
Bme1390I	CCNGG	3 cut(s)	21, 116, 423
Bme18I	GGWCC	5 cut(s)	17, 140, 235, 444, 455
BmgT120I	GGNCC	5 cut(s)	17, 140, 235, 444, 455
BmiI	GGNNCC	2 cut(s)	237, 445
BmrFI	CCNGG	3 cut(s)	21, 116, 423
BmrI	ACTGGG	1 cut(s)	450
BmsI	GCATC	2 cut(s)	211, 467
BmuI	ACTGGG	1 cut(s)	450
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
BpmI	CTGGAG	3 cut(s)	118, 336, 444
Bpu10I	CCTNAGC	1 cut(s)	459
BsaJI	CCNNGG	4 cut(s)	136, 148, 179, 433
BsaXI	ACNNNNNCTCC	4 cut(s)	160, 190, 546, 576
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 149, 385
Bse118I	RCCGGY	1 cut(s)	40
Bse1I	ACTGG	3 cut(s)	101, 445, 577
Bse3DI	GCAATG	1 cut(s)	245
BseBI	CCWGG	3 cut(s)	21, 116, 423
BseDI	CCNNGG	4 cut(s)	136, 148, 179, 433
BseGI	GGATG	3 cut(s)	52, 241, 482
BseLI	CCNNNNNNNGG	3 cut(s)	121, 149, 385
BseMI	GCAATG	1 cut(s)	245
BseMII	CTCAG	1 cut(s)	450
BseNI	ACTGG	3 cut(s)	101, 445, 577
BseXI	GCAGC	2 cut(s)	71, 394
BseYI	CCCAGC	1 cut(s)	378
BshFI	GGCC	1 cut(s)	421
BsiSI	CCGG	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	3 cut(s)	121, 149, 385
BsmFI	GGGAC	1 cut(s)	457
BsnI	GGCC	1 cut(s)	421
Bsp1286I	GDGCHC	1 cut(s)	626
Bsp143I	GATC	3 cut(s)	64, 267, 427
BspACI	CCGC	1 cut(s)	15
BspANI	GGCC	1 cut(s)	421
BspCNI	CTCAG	1 cut(s)	451
BspLI	GGNNCC	2 cut(s)	237, 445
BspTI	CTTAAG	1 cut(s)	415
BsrDI	GCAATG	1 cut(s)	245
BsrFI	RCCGGY	1 cut(s)	40
BsrI	ACTGG	3 cut(s)	101, 445, 577
BssAI	RCCGGY	1 cut(s)	40
BssECI	CCNNGG	4 cut(s)	136, 148, 179, 433
BssMI	GATC	3 cut(s)	64, 267, 427
BssT1I	CCWWGG	4 cut(s)	136, 148, 179, 433
Bst2UI	CCWGG	3 cut(s)	21, 116, 423
Bst4CI	ACNGT	1 cut(s)	373
BstAFI	CTTAAG	1 cut(s)	415
BstC8I	GCNNGC	4 cut(s)	387, 482, 584, 626
BstDEI	CTNAG	1 cut(s)	459
BstF5I	GGATG	3 cut(s)	52, 241, 482
BstKTI	GATC	3 cut(s)	67, 270, 430
BstMBI	GATC	3 cut(s)	64, 267, 427
BstNI	CCWGG	3 cut(s)	21, 116, 423
BstSCI	CCNGG	3 cut(s)	19, 114, 421
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	71, 394
BstX2I	RGATCY	2 cut(s)	267, 427
BstYI	RGATCY	2 cut(s)	267, 427
BsuRI	GGCC	1 cut(s)	421
BtsCI	GGATG	3 cut(s)	52, 241, 482
BtsIMutI	CAGTG	1 cut(s)	378
Cac8I	GCNNGC	4 cut(s)	387, 482, 584, 626
CaiI	CAGNNNCTG	1 cut(s)	385
Cfr10I	RCCGGY	1 cut(s)	40
Cfr13I	GGNCC	5 cut(s)	17, 140, 235, 444, 455
CspCI	CAANNNNNGTGG	2 cut(s)	347, 382
CviAII	CATG	2 cut(s)	120, 495
DdeI	CTNAG	1 cut(s)	459
DpnI	GATC	3 cut(s)	66, 269, 429
DpnII	GATC	3 cut(s)	64, 267, 427
Eco130I	CCWWGG	4 cut(s)	136, 148, 179, 433
Eco147I	AGGCCT	1 cut(s)	421
Eco24I	GRGCYC	1 cut(s)	626
Eco32I	GATATC	2 cut(s)	112, 174
Eco47I	GGWCC	5 cut(s)	17, 140, 235, 444, 455
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRII	CCWGG	3 cut(s)	19, 114, 421
EcoRV	GATATC	2 cut(s)	112, 174
EcoT14I	CCWWGG	4 cut(s)	136, 148, 179, 433
EcoT38I	GRGCYC	1 cut(s)	626
ErhI	CCWWGG	4 cut(s)	136, 148, 179, 433
FaeI	CATG	2 cut(s)	123, 498
FaiI	YATR	8 cut(s)	69, 121, 129, 282, 287, 364, 396, 496
FaqI	GGGAC	1 cut(s)	457
FatI	CATG	2 cut(s)	119, 494
Fnu4HI	GCNGC	3 cut(s)	6, 60, 383
FokI	GGATG	3 cut(s)	59, 228, 489
FriOI	GRGCYC	1 cut(s)	626
Fsp4HI	GCNGC	3 cut(s)	6, 60, 383
FspBI	CTAG	3 cut(s)	105, 203, 485
GluI	GCNGC	3 cut(s)	6, 60, 383
GsaI	CCCAGC	1 cut(s)	382
GsuI	CTGGAG	3 cut(s)	118, 336, 444
HaeIII	GGCC	1 cut(s)	421
HapII	CCGG	1 cut(s)	41
Hin1II	CATG	2 cut(s)	123, 498
HincII	GTYRAC	1 cut(s)	492
HindII	GTYRAC	1 cut(s)	492
HinfI	GANTC	2 cut(s)	326, 467
HpaII	CCGG	1 cut(s)	41
Hpy166II	GTNNAC	2 cut(s)	455, 492
Hpy188III	TCNNGA	3 cut(s)	85, 203, 593
Hpy8I	GTNNAC	2 cut(s)	455, 492
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4V	TGCA	1 cut(s)	411
HpyF3I	CTNAG	1 cut(s)	459
Hsp92II	CATG	2 cut(s)	123, 498
Kzo9I	GATC	3 cut(s)	64, 267, 427
LmnI	GCTCC	1 cut(s)	229
Lsp1109I	GCAGC	2 cut(s)	71, 394
LweI	GCATC	2 cut(s)	211, 467
MaeI	CTAG	3 cut(s)	105, 203, 485
MaeIII	GTNAC	5 cut(s)	187, 337, 373, 529, 614
MalI	GATC	3 cut(s)	66, 269, 429
MboI	GATC	3 cut(s)	64, 267, 427
MboII	GAAGA	1 cut(s)	560
MflI	RGATCY	2 cut(s)	267, 427
MhlI	GDGCHC	1 cut(s)	626
MluCI	AATT	5 cut(s)	29, 277, 303, 349, 539
MlyI	GAGTC	1 cut(s)	320
MnlI	CCTC	2 cut(s)	49, 289
MroXI	GAANNNNTTC	1 cut(s)	129
MseI	TTAA	3 cut(s)	306, 416, 521
MspA1I	CMGCKG	2 cut(s)	314, 385
MspCI	CTTAAG	1 cut(s)	415
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	3 cut(s)	21, 116, 423
MvaI	CCWGG	3 cut(s)	21, 116, 423
NdeII	GATC	3 cut(s)	64, 267, 427
NlaIII	CATG	2 cut(s)	123, 498
NlaIV	GGNNCC	2 cut(s)	237, 445
NmuCI	GTSAC	3 cut(s)	187, 337, 373
PceI	AGGCCT	1 cut(s)	421
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	467
PflMI	CCANNNNNTGG	1 cut(s)	385
PfoI	TCCNGGA	1 cut(s)	19
PkrI	GCNGC	3 cut(s)	7, 61, 384
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
PpuMI	RGGWCCY	1 cut(s)	235
Psp5II	RGGWCCY	1 cut(s)	235
Psp6I	CCWGG	3 cut(s)	19, 114, 421
PspFI	CCCAGC	1 cut(s)	378
PspGI	CCWGG	3 cut(s)	19, 114, 421
PspN4I	GGNNCC	2 cut(s)	237, 445
PspPI	GGNCC	5 cut(s)	17, 140, 235, 444, 455
PspPPI	RGGWCCY	1 cut(s)	235
PstNI	CAGNNNCTG	1 cut(s)	385
PsuI	RGATCY	2 cut(s)	267, 427
PvuII	CAGCTG	2 cut(s)	314, 385
SaqAI	TTAA	3 cut(s)	306, 416, 521
SatI	GCNGC	3 cut(s)	6, 60, 383
Sau3AI	GATC	3 cut(s)	64, 267, 427
Sau96I	GGNCC	5 cut(s)	17, 140, 235, 444, 455
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	3 cut(s)	21, 116, 423
SduI	GDGCHC	1 cut(s)	626
SetI	ASST	5 cut(s)	202, 300, 316, 387, 460
SfaNI	GCATC	2 cut(s)	211, 467
SfcI	CTRYAG	1 cut(s)	9
SinI	GGWCC	5 cut(s)	17, 140, 235, 444, 455
SmlI	CTYRAG	1 cut(s)	415
SmoI	CTYRAG	1 cut(s)	415
Sse9I	AATT	5 cut(s)	29, 277, 303, 349, 539
SseBI	AGGCCT	1 cut(s)	421
SsiI	CCGC	1 cut(s)	15
SspMI	CTAG	3 cut(s)	105, 203, 485
StuI	AGGCCT	1 cut(s)	421
StyD4I	CCNGG	3 cut(s)	19, 114, 421
StyI	CCWWGG	4 cut(s)	136, 148, 179, 433
TaaI	ACNGT	1 cut(s)	373
TaqI	TCGA	1 cut(s)	195
TasI	AATT	5 cut(s)	29, 277, 303, 349, 539
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	3 cut(s)	306, 416, 521
Tru9I	TTAA	3 cut(s)	306, 416, 521
TscAI	CASTG	1 cut(s)	378
TseFI	GTSAC	3 cut(s)	187, 337, 373
TseI	GCWGC	3 cut(s)	5, 59, 382
Tsp45I	GTSAC	3 cut(s)	187, 337, 373
TspDTI	ATGAA	4 cut(s)	42, 104, 532, 573
TspRI	CASTG	1 cut(s)	378
Van91I	CCANNNNNTGG	1 cut(s)	385
Vha464I	CTTAAG	1 cut(s)	415
VpaK11BI	GGWCC	5 cut(s)	17, 140, 235, 444, 455
XapI	RAATTY	1 cut(s)	539
XbaI	TCTAGA	1 cut(s)	202
XmnI	GAANNNNTTC	1 cut(s)	129
XspI	CTAG	3 cut(s)	105, 203, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.