Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003811

Physical Location & Seq

Genomic Coordinates Reverse (-)

855176 .. 921766

Gene Structure 66591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG012700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCTCTCACTTCCTTCATCGAAGTCGACCCGAGCTCTCACTTCCCCATACAGAACCTCCCCTTCGGAGTGTTCAAGCCCGAACCGGCGTCACCGCCTCGACCGGGCGTGGCCATCGGCGATTACGTCTTGGACTTGTCAGCTATCGCCGCCGCCGGCCTCTTCAACGGTCCGATCCTCAGTAACTCCGATTGCTTTCATCAGCCTAATCTGAACGAGTTCTTGGCCTTGGGACGACCTGCTTGGAAGGAAGCACGTGCCACACTTCAGAAGCTACTTTCATCTACTGAGCCAGCATTGCGTGACAATGAAAGTTTAAAGCAAAGAACTGCGGACAAAATCTCATCATTGAATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004334 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016787 GO:0016822 GO:0016823 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0071704 GO:0072329 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

FAA_hydrolase FAA_hydrolase_N

Protein Analysis

119

Amino Acids

12.86

Weight (kDa)

5.58

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAA_hydrolase_N	PF09298	18 - 115	1.3e-31	Fumarylacetoacetase N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12050
fragaria_vesca	FvH4_3g01030
malus_domestica	MD10G1331100.v1.1
prunus_persica	Prupe.4G011100_v2.0.a1
pyrus_communis	pycom10g28060
rosa_chinensis	RchiOBHm_Chr3g0477951 RchiOBHm_Chr3g0484131 RchiOBHm_Chr5g0001571 RchiOBHm_Chr5g0003621
rosa_laevigata	RLG00000030938 RLG00000030942
rosa_multiflora	Rmu_co8093718.1_g000001 Rmu_sc0003749.1_g000003 Rmu_sc0005991.1_g000008 Rmu_sc0006320.1_g000011 Rmu_sc0029518.1_g000002 Rmu_sc0040965.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074840
rosa_rugosa	Rorug02G0302800 Rorug03G0164100 Rorug04G0391100
rosa_samantha	Rh3AG214900 Rh3AG258900 Rh3BG248500 Rh3CG242500 Rh3DG241900 Rh5AG012300 Rh5BG014900 Rh5BG015100 Rh5CG013300 Rh5DG012600 Rh5DG012700
rosa_wichuraiana	Rw3G019370 Rw5G001170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	247
AccI	GTMKAC	1 cut(s)	27
AciI	CCGC	4 cut(s)	95, 150, 153, 332
AclWI	GGATC	1 cut(s)	169
AcoI	YGGCCR	1 cut(s)	111
AcuI	CTGAAG	1 cut(s)	251
AcvI	CACGTG	1 cut(s)	257
AcyI	GRCGYC	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	3 cut(s)	76, 166, 352
AjuI	GAANNNNNNNTTGG	2 cut(s)	206, 238
AluBI	AGCT	3 cut(s)	36, 143, 274
AluI	AGCT	3 cut(s)	36, 143, 274
Alw21I	GWGCWC	1 cut(s)	38
AlwI	GGATC	1 cut(s)	169
Ama87I	CYCGRG	1 cut(s)	31
AoxI	GGCC	3 cut(s)	111, 157, 225
Asp700I	GAANNNNTTC	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	170
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	1 cut(s)	84
AvaI	CYCGRG	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	170
BalI	TGGCCA	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	38
BbrPI	CACGTG	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	38
BccI	CCATC	1 cut(s)	122
BcnI	CCSGG	1 cut(s)	105
BfuAI	ACCTGC	1 cut(s)	247
BisI	GCNGC	2 cut(s)	150, 153
BlsI	GCNGC	2 cut(s)	151, 154
Bme1390I	CCNGG	1 cut(s)	105
Bme18I	GGWCC	1 cut(s)	170
BmeT110I	CYCGRG	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	170
BmrFI	CCNGG	1 cut(s)	105
BpuMI	CCSGG	1 cut(s)	105
BsaAI	YACGTR	1 cut(s)	257
BsaHI	GRCGYC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	228
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse118I	RCCGGY	2 cut(s)	85, 155
Bse3DI	GCAATG	1 cut(s)	296
BseDI	CCNNGG	1 cut(s)	228
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMI	GCAATG	1 cut(s)	296
BseMII	CTCAG	2 cut(s)	193, 279
Bsh1285I	CGRYCG	1 cut(s)	104
BshFI	GGCC	3 cut(s)	113, 159, 227
BsiEI	CGRYCG	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	31
BsiSI	CCGG	3 cut(s)	86, 104, 156
BslFI	GGGAC	1 cut(s)	246
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	246
BsnI	GGCC	3 cut(s)	113, 159, 227
BsoBI	CYCGRG	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	174
BspACI	CCGC	4 cut(s)	95, 150, 153, 332
BspANI	GGCC	3 cut(s)	113, 159, 227
BspCNI	CTCAG	2 cut(s)	192, 280
BspMI	ACCTGC	1 cut(s)	247
BspPI	GGATC	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	296
BsrFI	RCCGGY	2 cut(s)	85, 155
BssAI	RCCGGY	2 cut(s)	85, 155
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	1 cut(s)	174
BssNI	GRCGYC	1 cut(s)	89
BssT1I	CCWWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	170
Bst6I	CTCTTC	1 cut(s)	167
BstACI	GRCGYC	1 cut(s)	89
BstBAI	YACGTR	1 cut(s)	257
BstC8I	GCNNGC	2 cut(s)	157, 294
BstDEI	CTNAG	2 cut(s)	179, 288
BstKTI	GATC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	174
BstMCI	CGRYCG	1 cut(s)	104
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 298
BstSCI	CCNGG	1 cut(s)	103
BsuRI	GGCC	3 cut(s)	113, 159, 227
BveI	ACCTGC	1 cut(s)	247
Cac8I	GCNNGC	2 cut(s)	157, 294
Cfr10I	RCCGGY	2 cut(s)	85, 155
Cfr13I	GGNCC	1 cut(s)	170
CpoI	CGGWCCG	1 cut(s)	170
CseI	GACGC	1 cut(s)	78
CspI	CGGWCCG	1 cut(s)	170
DdeI	CTNAG	2 cut(s)	179, 288
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
DraI	TTTAAA	1 cut(s)	318
EaeI	YGGCCR	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
Ecl136II	GAGCTC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	170
Eco53kI	GAGCTC	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	251
Eco72I	CACGTG	1 cut(s)	257
Eco88I	CYCGRG	1 cut(s)	31
EcoICRI	GAGCTC	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	228
FaiI	YATR	1 cut(s)	50
FaqI	GGGAC	1 cut(s)	246
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	2 cut(s)	150, 153
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	2 cut(s)	150, 153
GluI	GCNGC	2 cut(s)	150, 153
HaeIII	GGCC	3 cut(s)	113, 159, 227
HapII	CCGG	3 cut(s)	86, 104, 156
HgaI	GACGC	1 cut(s)	78
Hin1I	GRCGYC	1 cut(s)	89
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HpaII	CCGG	3 cut(s)	86, 104, 156
HphI	GGTGA	1 cut(s)	84
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	5 cut(s)	68, 174, 190, 213, 270
Hpy8I	GTNNAC	1 cut(s)	28
HpyAV	CCTTC	3 cut(s)	25, 73, 241
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4IV	ACGT	2 cut(s)	126, 256
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 298
HpyF3I	CTNAG	2 cut(s)	179, 288
HpySE526I	ACGT	2 cut(s)	126, 256
Hsp92I	GRCGYC	1 cut(s)	89
KroI	GCCGGC	1 cut(s)	155
KroNI	GCCGGC	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	174
LpnPI	CCDG	5 cut(s)	99, 117, 169, 252, 306
MaeII	ACGT	2 cut(s)	126, 256
MaeIII	GTNAC	3 cut(s)	90, 182, 302
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	38
MlsI	TGGCCA	1 cut(s)	113
MluNI	TGGCCA	1 cut(s)	113
MnlI	CCTC	4 cut(s)	68, 108, 170, 188
Mox20I	TGGCCA	1 cut(s)	113
MroNI	GCCGGC	1 cut(s)	155
MroXI	GAANNNNTTC	1 cut(s)	218
MscI	TGGCCA	1 cut(s)	113
MseI	TTAA	1 cut(s)	317
Msp20I	TGGCCA	1 cut(s)	113
MspI	CCGG	3 cut(s)	86, 104, 156
MspR9I	CCNGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	2 cut(s)	149, 298
NaeI	GCCGGC	1 cut(s)	157
NciI	CCSGG	1 cut(s)	105
NdeII	GATC	1 cut(s)	174
NgoMIV	GCCGGC	1 cut(s)	155
NmuCI	GTSAC	2 cut(s)	90, 302
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PdiI	GCCGGC	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	218
PkrI	GCNGC	2 cut(s)	151, 154
PmaCI	CACGTG	1 cut(s)	257
PmlI	CACGTG	1 cut(s)	257
Ppu21I	YACGTR	1 cut(s)	257
Psp124BI	GAGCTC	1 cut(s)	38
PspCI	CACGTG	1 cut(s)	257
PspPI	GGNCC	1 cut(s)	170
Rsr2I	CGGWCCG	1 cut(s)	170
RsrII	CGGWCCG	1 cut(s)	170
SacI	GAGCTC	1 cut(s)	38
SalI	GTCGAC	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	317
SatI	GCNGC	2 cut(s)	150, 153
Sau3AI	GATC	1 cut(s)	174
Sau96I	GGNCC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	105
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	7 cut(s)	38, 60, 129, 145, 241, 259, 276
SinI	GGWCC	1 cut(s)	170
SsiI	CCGC	4 cut(s)	95, 150, 153, 332
SstI	GAGCTC	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	103
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	170
TaiI	ACGT	2 cut(s)	129, 259
TaqI	TCGA	3 cut(s)	21, 27, 100
TauI	GCSGC	2 cut(s)	152, 155
Tru1I	TTAA	1 cut(s)	317
Tru9I	TTAA	1 cut(s)	317
TseFI	GTSAC	2 cut(s)	90, 302
Tsp45I	GTSAC	2 cut(s)	90, 302
TspDTI	ATGAA	4 cut(s)	7, 188, 270, 324
VpaK11BI	GGWCC	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	27
XmnI	GAANNNNTTC	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.