Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003811

Physical Location & Seq

Genomic Coordinates Reverse (-)

816553 .. 855163

Gene Structure 38611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG012600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGCTGGTTCCTATGGCGATTGGGGACTACACGGACTTCTTTTCATCGATGCATCACGCAAAGAACTGCGGGACCATGTTTCGTGGTCCACAGAATGCAATTCAACCGAACTGGTTTCACCTACCAATTGCATATCATGGACGAGCTTCGTCGATTGTTGTCTCTGGAACGGACATTATTCGACCCAGAGGTCAAGGAGCTCCTAGTGGAAACTCTACACCATATTTTGGTCCCTCACTGAAACTAGATTTTGAGCTTGAAATGGCTGCTGTAGTCGGTCCTGGAAATGAATTAGGAAAGCCGGTGGATGTGAATGAGGCAGCAGATCATATTTTTGGACTTGTCTTGATGAATGACTGGAGTGCTAGAGATATCCAGGCATGGGAATATATTCCCCTTGGTCCTTTCCTTGGAAAAAGTTTTGGAACTACTATATCTCCTTGGATAGTGACACTCGAAGCTCTAGAACCATTTTCCTGTGATGCTCCCAAACAGGACCCCCATCCATTGCCCTATCTGGCTGAAAAGATCTCCAAAAATTATGACATAAAATTGGAGGTTCAAATTAAACCAGCTGGAGAGAAAGACTCATCTGTGGTCACAAAGAGTAATTTCAACCACTTATATTGGACAGTGACTCAGCAGCTGGCACATCATACAATCAATGGTTGTAACTTAAGGCCTGGAGATCTCCTTGGAACTGGGACCATTAGTGGACCTGAGCCAGAATCTTATGGATGCTTGCTGGAGTTGACATGGAATGGACAAAAGCAGTTGTCATTAAATGGCATTACTCGTAAATTCCTTGAAGATGGAGATGAAGTCATCATTACTGGTTTTAGCAAGGGAAATGGCTACAATGTTGGGTTCGGGACATGCTCTGGAAAGATTCTTCCCCCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004334 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016787 GO:0016822 GO:0016823 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0071704 GO:0072329 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

FAA_hydrolase FAA_hydrolase_N

Protein Analysis

301

Amino Acids

32.82

Weight (kDa)

5.56

Isoelectric Point (pI)

22.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAA_hydrolase	PF01557	12 - 279	6.1e-40	Fumarylacetoacetate (FAA) hydrolase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12050
fragaria_vesca	FvH4_3g01030
malus_domestica	MD10G1331100.v1.1
prunus_persica	Prupe.4G011100_v2.0.a1
pyrus_communis	pycom10g28060
rosa_chinensis	RchiOBHm_Chr3g0477951 RchiOBHm_Chr3g0484131 RchiOBHm_Chr5g0001571 RchiOBHm_Chr5g0003621
rosa_laevigata	RLG00000030938 RLG00000030942
rosa_multiflora	Rmu_co8093718.1_g000001 Rmu_sc0003749.1_g000003 Rmu_sc0005991.1_g000008 Rmu_sc0006320.1_g000011 Rmu_sc0029518.1_g000002 Rmu_sc0040965.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074840
rosa_rugosa	Rorug02G0302800 Rorug03G0164100 Rorug04G0391100
rosa_samantha	Rh3AG214900 Rh3AG258900 Rh3BG248500 Rh3CG242500 Rh3DG241900 Rh5AG012300 Rh5BG014900 Rh5BG015100 Rh5CG013300 Rh5DG012600 Rh5DG012700
rosa_wichuraiana	Rw3G019370 Rw5G001170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	189
AccB7I	CCANNNNNTGG	1 cut(s)	227
AciI	CCGC	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	800
AfiI	CCNNNNNNNGG	3 cut(s)	227, 382, 410
AflII	CTTAAG	1 cut(s)	676
AgsI	TTSAA	5 cut(s)	104, 260, 563, 616, 809
AjnI	CCWGG	3 cut(s)	280, 375, 682
AluBI	AGCT	6 cut(s)	146, 200, 256, 461, 575, 646
AluI	AGCT	6 cut(s)	146, 200, 256, 461, 575, 646
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	1 cut(s)	166
AlwNI	CAGNNNCTG	1 cut(s)	646
AoxI	GGCC	1 cut(s)	680
ApeKI	GCWGC	3 cut(s)	266, 320, 643
ApoI	RAATTY	1 cut(s)	800
Asp700I	GAANNNNTTC	1 cut(s)	390
AspS9I	GGNCC	8 cut(s)	72, 86, 230, 278, 401, 496, 705, 716
AsuHPI	GGTGA	1 cut(s)	110
AvaII	GGWCC	8 cut(s)	72, 86, 230, 278, 401, 496, 705, 716
BanII	GRGCYC	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	202
BbvI	GCAGC	3 cut(s)	253, 332, 655
BccI	CCATC	2 cut(s)	510, 806
BciT130I	CCWGG	3 cut(s)	282, 377, 684
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	4 cut(s)	204, 245, 366, 464
BfmI	CTRYAG	1 cut(s)	270
BfrI	CTTAAG	1 cut(s)	676
BglII	AGATCT	2 cut(s)	528, 688
BisI	GCNGC	3 cut(s)	267, 321, 644
BlsI	GCNGC	3 cut(s)	268, 322, 645
Bme1390I	CCNGG	3 cut(s)	282, 377, 684
Bme18I	GGWCC	8 cut(s)	72, 86, 230, 278, 401, 496, 705, 716
BmgT120I	GGNCC	8 cut(s)	72, 86, 230, 278, 401, 496, 705, 716
BmiI	GGNNCC	5 cut(s)	9, 73, 232, 498, 706
BmrFI	CCNGG	3 cut(s)	282, 377, 684
BmrI	ACTGGG	1 cut(s)	711
BmsI	GCATC	4 cut(s)	39, 61, 472, 728
BmuI	ACTGGG	1 cut(s)	711
BplI	GAGNNNNNCTC	2 cut(s)	572, 604
BpmI	CTGGAG	4 cut(s)	379, 597, 705, 767
Bpu10I	CCTNAGC	1 cut(s)	720
Bsa29I	ATCGAT	1 cut(s)	47
BsaJI	CCNNGG	4 cut(s)	397, 409, 440, 694
BsaXI	ACNNNNNCTCC	4 cut(s)	421, 451, 807, 837
Bsc4I	CCNNNNNNNGG	3 cut(s)	227, 382, 410
Bse118I	RCCGGY	1 cut(s)	301
Bse1I	ACTGG	4 cut(s)	116, 362, 706, 838
Bse3DI	GCAATG	1 cut(s)	506
BseBI	CCWGG	3 cut(s)	282, 377, 684
BseCI	ATCGAT	1 cut(s)	47
BseDI	CCNNGG	4 cut(s)	397, 409, 440, 694
BseGI	GGATG	3 cut(s)	313, 502, 743
BseLI	CCNNNNNNNGG	3 cut(s)	227, 382, 410
BseMI	GCAATG	1 cut(s)	506
BseMII	CTCAG	2 cut(s)	653, 711
BseNI	ACTGG	4 cut(s)	116, 362, 706, 838
BseXI	GCAGC	3 cut(s)	253, 332, 655
BshFI	GGCC	1 cut(s)	682
BshVI	ATCGAT	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	302
BslFI	GGGAC	5 cut(s)	38, 85, 216, 718, 886
BslI	CCNNNNNNNGG	3 cut(s)	227, 382, 410
BsmAI	GTCTC	1 cut(s)	166
BsmFI	GGGAC	5 cut(s)	38, 85, 216, 718, 886
BsmI	GAATGC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	682
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	3 cut(s)	325, 528, 688
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	1 cut(s)	682
BspCNI	CTCAG	2 cut(s)	652, 712
BspDI	ATCGAT	1 cut(s)	47
BspLI	GGNNCC	5 cut(s)	9, 73, 232, 498, 706
BspTI	CTTAAG	1 cut(s)	676
BsrDI	GCAATG	1 cut(s)	506
BsrFI	RCCGGY	1 cut(s)	301
BsrI	ACTGG	4 cut(s)	116, 362, 706, 838
BssAI	RCCGGY	1 cut(s)	301
BssECI	CCNNGG	4 cut(s)	397, 409, 440, 694
BssMI	GATC	3 cut(s)	325, 528, 688
BssT1I	CCWWGG	4 cut(s)	397, 409, 440, 694
Bst2UI	CCWGG	3 cut(s)	282, 377, 684
Bst4CI	ACNGT	1 cut(s)	634
BstAFI	CTTAAG	1 cut(s)	676
BstC8I	GCNNGC	2 cut(s)	648, 743
BstDEI	CTNAG	2 cut(s)	639, 720
BstF5I	GGATG	3 cut(s)	313, 502, 743
BstKTI	GATC	3 cut(s)	328, 531, 691
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	3 cut(s)	325, 528, 688
BstNI	CCWGG	3 cut(s)	282, 377, 684
BstNSI	RCATGY	1 cut(s)	879
BstSCI	CCNGG	3 cut(s)	280, 375, 682
BstSFI	CTRYAG	1 cut(s)	270
BstV1I	GCAGC	3 cut(s)	253, 332, 655
BstX2I	RGATCY	2 cut(s)	528, 688
BstYI	RGATCY	2 cut(s)	528, 688
Bsu15I	ATCGAT	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	682
BsuTUI	ATCGAT	1 cut(s)	47
BtsCI	GGATG	3 cut(s)	313, 502, 743
BtsIMutI	CAGTG	2 cut(s)	236, 639
Cac8I	GCNNGC	2 cut(s)	648, 743
CaiI	CAGNNNCTG	1 cut(s)	646
Cfr10I	RCCGGY	1 cut(s)	301
Cfr13I	GGNCC	8 cut(s)	72, 86, 230, 278, 401, 496, 705, 716
ClaI	ATCGAT	1 cut(s)	47
CspCI	CAANNNNNGTGG	2 cut(s)	608, 643
CviAII	CATG	5 cut(s)	76, 137, 381, 756, 876
DdeI	CTNAG	2 cut(s)	639, 720
DpnI	GATC	3 cut(s)	327, 530, 690
DpnII	GATC	3 cut(s)	325, 528, 688
DrdI	GACNNNNNNGTC	1 cut(s)	189
DseDI	GACNNNNNNGTC	1 cut(s)	189
Ecl136II	GAGCTC	1 cut(s)	200
Eco130I	CCWWGG	4 cut(s)	397, 409, 440, 694
Eco147I	AGGCCT	1 cut(s)	682
Eco24I	GRGCYC	1 cut(s)	202
Eco32I	GATATC	1 cut(s)	373
Eco47I	GGWCC	8 cut(s)	72, 86, 230, 278, 401, 496, 705, 716
Eco53kI	GAGCTC	1 cut(s)	200
EcoICRI	GAGCTC	1 cut(s)	200
EcoO109I	RGGNCCY	1 cut(s)	496
EcoRII	CCWGG	3 cut(s)	280, 375, 682
EcoRV	GATATC	1 cut(s)	373
EcoT14I	CCWWGG	4 cut(s)	397, 409, 440, 694
EcoT22I	ATGCAT	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	202
ErhI	CCWWGG	4 cut(s)	397, 409, 440, 694
FaeI	CATG	5 cut(s)	79, 140, 384, 759, 879
FaqI	GGGAC	5 cut(s)	38, 85, 216, 718, 886
FatI	CATG	5 cut(s)	75, 136, 380, 755, 875
FauI	CCCGC	1 cut(s)	62
Fnu4HI	GCNGC	3 cut(s)	267, 321, 644
FokI	GGATG	3 cut(s)	320, 489, 750
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	3 cut(s)	267, 321, 644
FspBI	CTAG	4 cut(s)	204, 245, 366, 464
GluI	GCNGC	3 cut(s)	267, 321, 644
GsuI	CTGGAG	4 cut(s)	379, 597, 705, 767
HaeIII	GGCC	1 cut(s)	682
HapII	CCGG	1 cut(s)	302
Hin1II	CATG	5 cut(s)	79, 140, 384, 759, 879
HincII	GTYRAC	1 cut(s)	753
HindII	GTYRAC	1 cut(s)	753
HinfI	GANTC	4 cut(s)	587, 637, 728, 889
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	3 cut(s)	89, 716, 753
Hpy188III	TCNNGA	5 cut(s)	165, 346, 464, 871, 882
Hpy8I	GTNNAC	3 cut(s)	89, 716, 753
Hpy99I	CGWCG	1 cut(s)	154
HpyCH4III	ACNGT	1 cut(s)	634
HpyCH4V	TGCA	3 cut(s)	52, 98, 131
HpyF3I	CTNAG	2 cut(s)	639, 720
Hsp92II	CATG	5 cut(s)	79, 140, 384, 759, 879
Kzo9I	GATC	3 cut(s)	325, 528, 688
LmnI	GCTCC	3 cut(s)	197, 205, 490
Lsp1109I	GCAGC	3 cut(s)	253, 332, 655
LweI	GCATC	4 cut(s)	39, 61, 472, 728
MaeI	CTAG	4 cut(s)	204, 245, 366, 464
MaeIII	GTNAC	4 cut(s)	448, 598, 634, 671
MalI	GATC	3 cut(s)	327, 530, 690
MboI	GATC	3 cut(s)	325, 528, 688
MboII	GAAGA	2 cut(s)	821, 884
MfeI	CAATTG	1 cut(s)	126
MflI	RGATCY	2 cut(s)	528, 688
MhlI	GDGCHC	1 cut(s)	202
MluCI	AATT	8 cut(s)	99, 126, 290, 538, 551, 564, 610, 800
MlyI	GAGTC	2 cut(s)	581, 631
MnlI	CCTC	4 cut(s)	182, 244, 310, 550
Mph1103I	ATGCAT	1 cut(s)	54
MroXI	GAANNNNTTC	1 cut(s)	390
MseI	TTAA	3 cut(s)	567, 677, 782
MspA1I	CMGCKG	2 cut(s)	575, 646
MspCI	CTTAAG	1 cut(s)	676
MspI	CCGG	1 cut(s)	302
MspR9I	CCNGG	3 cut(s)	282, 377, 684
MunI	CAATTG	1 cut(s)	126
Mva1269I	GAATGC	1 cut(s)	100
MvaI	CCWGG	3 cut(s)	282, 377, 684
NdeII	GATC	3 cut(s)	325, 528, 688
NlaIII	CATG	5 cut(s)	79, 140, 384, 759, 879
NlaIV	GGNNCC	5 cut(s)	9, 73, 232, 498, 706
NmuCI	GTSAC	3 cut(s)	448, 598, 634
NsiI	ATGCAT	1 cut(s)	54
NspI	RCATGY	1 cut(s)	879
PceI	AGGCCT	1 cut(s)	682
PctI	GAATGC	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	2 cut(s)	728, 889
PflMI	CCANNNNNTGG	1 cut(s)	227
PfoI	TCCNGGA	1 cut(s)	280
PkrI	GCNGC	3 cut(s)	268, 322, 645
PleI	GAGTC	2 cut(s)	581, 631
PpsI	GAGTC	2 cut(s)	581, 631
PpuMI	RGGWCCY	1 cut(s)	496
Psp124BI	GAGCTC	1 cut(s)	202
Psp5II	RGGWCCY	1 cut(s)	496
Psp6I	CCWGG	3 cut(s)	280, 375, 682
PspGI	CCWGG	3 cut(s)	280, 375, 682
PspN4I	GGNNCC	5 cut(s)	9, 73, 232, 498, 706
PspPI	GGNCC	8 cut(s)	72, 86, 230, 278, 401, 496, 705, 716
PspPPI	RGGWCCY	1 cut(s)	496
PstNI	CAGNNNCTG	1 cut(s)	646
PsuI	RGATCY	2 cut(s)	528, 688
PvuII	CAGCTG	2 cut(s)	575, 646
SacI	GAGCTC	1 cut(s)	202
SaqAI	TTAA	3 cut(s)	567, 677, 782
SatI	GCNGC	3 cut(s)	267, 321, 644
Sau3AI	GATC	3 cut(s)	325, 528, 688
Sau96I	GGNCC	8 cut(s)	72, 86, 230, 278, 401, 496, 705, 716
SchI	GAGTC	2 cut(s)	581, 631
ScrFI	CCNGG	3 cut(s)	282, 377, 684
SduI	GDGCHC	1 cut(s)	202
SfaNI	GCATC	4 cut(s)	39, 61, 472, 728
SfcI	CTRYAG	1 cut(s)	270
SinI	GGWCC	8 cut(s)	72, 86, 230, 278, 401, 496, 705, 716
SmlI	CTYRAG	1 cut(s)	676
SmoI	CTYRAG	1 cut(s)	676
Sse9I	AATT	8 cut(s)	99, 126, 290, 538, 551, 564, 610, 800
SseBI	AGGCCT	1 cut(s)	682
SsiI	CCGC	1 cut(s)	69
SspMI	CTAG	4 cut(s)	204, 245, 366, 464
SstI	GAGCTC	1 cut(s)	202
StuI	AGGCCT	1 cut(s)	682
StyD4I	CCNGG	3 cut(s)	280, 375, 682
StyI	CCWWGG	4 cut(s)	397, 409, 440, 694
TaaI	ACNGT	1 cut(s)	634
TaqI	TCGA	4 cut(s)	47, 152, 181, 456
TaqII	GACCGA	1 cut(s)	266
TasI	AATT	8 cut(s)	99, 126, 290, 538, 551, 564, 610, 800
TfiI	GAWTC	2 cut(s)	728, 889
Tru1I	TTAA	3 cut(s)	567, 677, 782
Tru9I	TTAA	3 cut(s)	567, 677, 782
TscAI	CASTG	2 cut(s)	243, 639
TseFI	GTSAC	3 cut(s)	448, 598, 634
TseI	GCWGC	3 cut(s)	266, 320, 643
Tsp45I	GTSAC	3 cut(s)	448, 598, 634
TspDTI	ATGAA	4 cut(s)	33, 303, 365, 834
TspGWI	ACGGA	2 cut(s)	47, 185
TspRI	CASTG	2 cut(s)	243, 639
Van91I	CCANNNNNTGG	1 cut(s)	227
Vha464I	CTTAAG	1 cut(s)	676
VpaK11BI	GGWCC	8 cut(s)	72, 86, 230, 278, 401, 496, 705, 716
XapI	RAATTY	1 cut(s)	800
XbaI	TCTAGA	1 cut(s)	463
XceI	RCATGY	1 cut(s)	879
XmnI	GAANNNNTTC	1 cut(s)	390
XspI	CTAG	4 cut(s)	204, 245, 366, 464
Zsp2I	ATGCAT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.