Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003811

Physical Location & Seq

Genomic Coordinates Reverse (-)

2254722 .. 2255576

Gene Structure 855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28492

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTCAAGTACTCTGCTGAAGAAAACCTATGGTTTTGTACTTTTTATTATTTCCAACTGTGTTCCTTTTGTAAATATATGTCAATTATCTGCAACTCATCTACATAATTTGGACATTGCCTCAGCAGCTAGCACACCGTACCTTACTATCAATGGTTGCAACTTAAGGCCTGGAGATCTCCTTGGAACTGGGACCATCAGTGGACCTGAGCCAGAATCTTATGGAAACTTGCTAGAGCTGACATGGGATAAGCCGTTGTCATTAAACGACGTTACTCGTAAATTCCTTGAAGATGGAGACGAAGTCATCATTACTGGTTTTAGCAAGGGAAATGGCTACAAAGTCGGGTTCGGGAAATGCTCCGGAAAGATTGTTCCACCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004334 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016787 GO:0016822 GO:0016823 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0071704 GO:0072329 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

FAA_hydrolase FAA_hydrolase_N

Protein Analysis

128

Amino Acids

13.72

Weight (kDa)

6.05

Isoelectric Point (pI)

19.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12050
fragaria_vesca	FvH4_3g01030
malus_domestica	MD10G1331100.v1.1
prunus_persica	Prupe.4G011100_v2.0.a1
pyrus_communis	pycom10g28060
rosa_chinensis	RchiOBHm_Chr3g0477951 RchiOBHm_Chr3g0484131 RchiOBHm_Chr5g0001571 RchiOBHm_Chr5g0003621
rosa_laevigata	RLG00000030938 RLG00000030942
rosa_multiflora	Rmu_co8093718.1_g000001 Rmu_sc0003749.1_g000003 Rmu_sc0005991.1_g000008 Rmu_sc0006320.1_g000011 Rmu_sc0029518.1_g000002 Rmu_sc0040965.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074840
rosa_rugosa	Rorug02G0302800 Rorug03G0164100 Rorug04G0391100
rosa_samantha	Rh3AG214900 Rh3AG258900 Rh3BG248500 Rh3CG242500 Rh3DG241900 Rh5AG012300 Rh5BG014900 Rh5BG015100 Rh5CG013300 Rh5DG012600 Rh5DG012700
rosa_wichuraiana	Rw3G019370 Rw5G001170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	362
AcsI	RAATTY	1 cut(s)	281
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	3 cut(s)	10, 39, 140
AflII	CTTAAG	1 cut(s)	163
AgsI	TTSAA	1 cut(s)	290
AjnI	CCWGG	1 cut(s)	169
AloI	GAACNNNNNNTCC	1 cut(s)	357
AluBI	AGCT	2 cut(s)	128, 238
AluI	AGCT	2 cut(s)	128, 238
Alw26I	GTCTC	1 cut(s)	291
Aor13HI	TCCGGA	1 cut(s)	362
AoxI	GGCC	1 cut(s)	167
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	1 cut(s)	281
AspS9I	GGNCC	2 cut(s)	192, 203
AsuNHI	GCTAGC	1 cut(s)	128
AvaII	GGWCC	2 cut(s)	192, 203
BbvCI	CCTCAGC	1 cut(s)	121
BbvI	GCAGC	1 cut(s)	137
BccI	CCATC	2 cut(s)	203, 287
BceAI	ACGGC	1 cut(s)	238
BciT130I	CCWGG	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	291
BfaI	CTAG	2 cut(s)	129, 233
BfrI	CTTAAG	1 cut(s)	163
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
BmcAI	AGTACT	1 cut(s)	10
Bme1390I	CCNGG	1 cut(s)	171
Bme18I	GGWCC	2 cut(s)	192, 203
BmgT120I	GGNCC	2 cut(s)	192, 203
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	1 cut(s)	171
BmrI	ACTGGG	1 cut(s)	198
BmtI	GCTAGC	1 cut(s)	132
BmuI	ACTGGG	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	192
Bpu10I	CCTNAGC	2 cut(s)	121, 207
BsaJI	CCNNGG	1 cut(s)	181
BsaWI	WCCGGW	1 cut(s)	362
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bse1I	ACTGG	2 cut(s)	193, 319
Bse3DI	GCAATG	1 cut(s)	114
BseAI	TCCGGA	1 cut(s)	362
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	181
BseMI	GCAATG	1 cut(s)	114
BseMII	CTCAG	2 cut(s)	135, 198
BseNI	ACTGG	2 cut(s)	193, 319
BseXI	GCAGC	1 cut(s)	137
BshFI	GGCC	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	363
BslFI	GGGAC	1 cut(s)	205
BsmAI	GTCTC	1 cut(s)	291
BsmBI	CGTCTC	1 cut(s)	291
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	169
Bsp13I	TCCGGA	1 cut(s)	362
Bsp143I	GATC	1 cut(s)	175
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	2 cut(s)	134, 199
BspEI	TCCGGA	1 cut(s)	362
BspLI	GGNNCC	1 cut(s)	193
BspOI	GCTAGC	1 cut(s)	132
BspTI	CTTAAG	1 cut(s)	163
BsrDI	GCAATG	1 cut(s)	114
BsrI	ACTGG	2 cut(s)	193, 319
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	1 cut(s)	175
BssT1I	CCWWGG	1 cut(s)	181
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	2 cut(s)	59, 138
BstAFI	CTTAAG	1 cut(s)	163
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	2 cut(s)	121, 207
BstKTI	GATC	1 cut(s)	178
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNI	CCWGG	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	169
BstV1I	GCAGC	1 cut(s)	137
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	130
Cfr13I	GGNCC	2 cut(s)	192, 203
Csp6I	GTAC	3 cut(s)	9, 38, 139
CviAII	CATG	1 cut(s)	243
CviJI	RGCY	6 cut(s)	128, 169, 211, 238, 253, 336
CviKI_1	RGCY	6 cut(s)	128, 169, 211, 238, 253, 336
CviQI	GTAC	3 cut(s)	9, 38, 139
DdeI	CTNAG	2 cut(s)	121, 207
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	181
Eco147I	AGGCCT	1 cut(s)	169
Eco47I	GGWCC	2 cut(s)	192, 203
Eco57I	CTGAAG	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	181
Esp3I	CGTCTC	1 cut(s)	291
FaeI	CATG	1 cut(s)	246
FaiI	YATR	6 cut(s)	30, 77, 79, 105, 222, 244
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	1 cut(s)	242
Fnu4HI	GCNGC	1 cut(s)	126
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	2 cut(s)	129, 233
GluI	GCNGC	1 cut(s)	126
GsuI	CTGGAG	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	1 cut(s)	363
Hin1II	CATG	1 cut(s)	246
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	1 cut(s)	363
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188III	TCNNGA	2 cut(s)	352, 363
Hpy8I	GTNNAC	1 cut(s)	203
Hpy99I	CGWCG	1 cut(s)	272
HpyCH4III	ACNGT	2 cut(s)	59, 138
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	2 cut(s)	92, 159
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	2 cut(s)	121, 207
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	246
Kpn2I	TCCGGA	1 cut(s)	362
Kzo9I	GATC	1 cut(s)	175
LmnI	GCTCC	1 cut(s)	365
LpnPI	CCDG	7 cut(s)	156, 174, 183, 219, 225, 300, 376
Lsp1109I	GCAGC	1 cut(s)	137
MaeI	CTAG	2 cut(s)	129, 233
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MboII	GAAGA	2 cut(s)	31, 302
MflI	RGATCY	1 cut(s)	175
MluCI	AATT	3 cut(s)	83, 106, 281
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	1 cut(s)	130
MroI	TCCGGA	1 cut(s)	362
MseI	TTAA	2 cut(s)	164, 263
MspCI	CTTAAG	1 cut(s)	163
MspI	CCGG	1 cut(s)	363
MspR9I	CCNGG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	125
NdeII	GATC	1 cut(s)	175
NheI	GCTAGC	1 cut(s)	128
NlaIII	CATG	1 cut(s)	246
NlaIV	GGNNCC	1 cut(s)	193
PceI	AGGCCT	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	215
PflFI	GACNNNGTC	1 cut(s)	302
PkrI	GCNGC	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	2 cut(s)	192, 203
PsuI	RGATCY	1 cut(s)	175
PsyI	GACNNNGTC	1 cut(s)	302
RsaI	GTAC	3 cut(s)	10, 39, 140
RsaNI	GTAC	3 cut(s)	9, 38, 139
SaqAI	TTAA	2 cut(s)	164, 263
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	1 cut(s)	175
Sau96I	GGNCC	2 cut(s)	192, 203
ScaI	AGTACT	1 cut(s)	10
ScrFI	CCNGG	1 cut(s)	171
SetI	ASST	7 cut(s)	29, 130, 144, 208, 240, 273, 382
SinI	GGWCC	2 cut(s)	192, 203
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
Sse9I	AATT	3 cut(s)	83, 106, 281
SseBI	AGGCCT	1 cut(s)	169
SspMI	CTAG	2 cut(s)	129, 233
StuI	AGGCCT	1 cut(s)	169
StyD4I	CCNGG	1 cut(s)	169
StyI	CCWWGG	1 cut(s)	181
TaaI	ACNGT	2 cut(s)	59, 138
TaiI	ACGT	1 cut(s)	273
TasI	AATT	3 cut(s)	83, 106, 281
TatI	WGTACW	2 cut(s)	8, 37
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	2 cut(s)	164, 263
Tru9I	TTAA	2 cut(s)	164, 263
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	1 cut(s)	125
TspRI	CASTG	1 cut(s)	205
Tth111I	GACNNNGTC	1 cut(s)	302
Vha464I	CTTAAG	1 cut(s)	163
VpaK11BI	GGWCC	2 cut(s)	192, 203
XapI	RAATTY	1 cut(s)	281
XspI	CTAG	2 cut(s)	129, 233
ZrmI	AGTACT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.