Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003811

Physical Location & Seq

Genomic Coordinates Forward (+)

28683611 .. 28686954

Gene Structure 3344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG258900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGAAGCGCCCTCCGAGCAACACCTTGTACGGCCTTTTTCGTTCCTTCCGAGAAAACAACCCGATTGATCACATCCCCTTACCGAACCTCCCGAGCTCTAACTTCGGTCATGGAAGTCGTCGACATCGGAAAAACTCCGTGTCCGGCGTAGCTCTCACTTCCTTCATCGAAGTCGACCCGAGCTCTCACTTCCCCATACAGCCAAAACCGGCTTCAACGGCTCGACCGGGCGTGGCCATCGGCGATTATGTGTTGGACTTGTCAGCAATCGCCGCCGCCGGTCTTTTCAACGGTCCGATCCTCAGAAACTCCGACTGCTTTTATCAGCCTAATTTGAACAAGTTCTTGGCCTTGGGACGACCTGCTTGGAAGGAAGCACGTGCTACACTTCAGAAGCTACTTTCATCTACTGAGCCAACATTGCGTGACAATCAAAGTTTAAAGCAGGAATCACTTATTCCGTTGAGCGAGGTGGAAATGCTGCTTCCTGTGGCGATTGGGGACTTTACAGACTTCTTTTCATCAATGGATCACGTACACGACTGCGGGGCCAAGATTAGTTATAAGGCAGGTCAGGCAATTCCACTGAAATGGTTGGACCTACCAATTGCATATCATGGACGAGCTTCGTCGATTGTTATCTCTGGAACTGACATTACTCGACCCAGGTCAATCAGAGAGGTGTCTCTTGAGACATTTTTACGTCCAAGACAACCTCCAGGTGGTCTGCTATATTTTGGTCCCGCAACGAAACTAGATTTTGAGCTTAAAATGGCTGCTGTAGTTGGTCCTGGAAATGAATTAGGGAATCCGGTGGATGTGAATGAGGCAGCAGATCACATTTTTGGACTTGTCTTGATGAATGGCTGGATTGCTAGAGATATCCAGGCAAAGGAATTTATTCCCAGTGTGCCTTTCCTAGGAAAAAGTTTTGGAACTACGATATCCACTTGGATAGTGACACTCGAAGCTCTAGAACCATTTTCCTGTGATCCTCCCAAAAAGACGATGATCAAACTTCCTTTTAACTGCAAGGTTCGAATTAAACCAGATGGAGAGAGGCGCTCATCTGTGGTCACAAAGAGTAATTTCAACCACTTAATTTGGACATTGCCTCAGCAGCTAGCACACCTTACCATCAATGGGTGCAACTTAAGGCCTGGAGATCTCTTTGGAACTGGGACCATCAGTGGACCTGAGCCAGAATCTTACGGAAGCTTGCTAGAGCTGACATGGGATAAGCCATTGTCATTAAACGGCGTTACTCGTGAATTTCTTGAAGATGGAGACGAAGTCATCATTACTGGTTTTAGCAAGGGAAATGGCTACAAAGTAGGGTTCGGGAAATGCTCTGGAAAGATTGTTCCACCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004334 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016787 GO:0016822 GO:0016823 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0071704 GO:0072329 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

FAA_hydrolase FAA_hydrolase_N

Protein Analysis

458

Amino Acids

50.12

Weight (kDa)

8.61

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAA_hydrolase_N	PF09298	70 - 163	4.4e-29	Fumarylacetoacetase N-terminal
FAA_hydrolase	PF01557	175 - 436	5.2e-32	Fumarylacetoacetate (FAA) hydrolase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12050
fragaria_vesca	FvH4_3g01030
malus_domestica	MD10G1331100.v1.1
prunus_persica	Prupe.4G011100_v2.0.a1
pyrus_communis	pycom10g28060
rosa_chinensis	RchiOBHm_Chr3g0477951 RchiOBHm_Chr3g0484131 RchiOBHm_Chr5g0001571 RchiOBHm_Chr5g0003621
rosa_laevigata	RLG00000030938 RLG00000030942
rosa_multiflora	Rmu_co8093718.1_g000001 Rmu_sc0003749.1_g000003 Rmu_sc0005991.1_g000008 Rmu_sc0006320.1_g000011 Rmu_sc0029518.1_g000002 Rmu_sc0040965.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074840
rosa_rugosa	Rorug02G0302800 Rorug03G0164100 Rorug04G0391100
rosa_samantha	Rh3AG214900 Rh3AG258900 Rh3BG248500 Rh3CG242500 Rh3DG241900 Rh5AG012300 Rh5BG014900 Rh5BG015100 Rh5CG013300 Rh5DG012600 Rh5DG012700
rosa_wichuraiana	Rw3G019370 Rw5G001170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	564
Acc36I	ACCTGC	2 cut(s)	370, 560
AccI	GTMKAC	2 cut(s)	121, 174
AciI	CCGC	4 cut(s)	273, 276, 546, 744
AclWI	GGATC	3 cut(s)	292, 537, 986
AcoI	YGGCCR	1 cut(s)	234
AcsI	RAATTY	2 cut(s)	896, 1271
AcuI	CTGAAG	1 cut(s)	374
AcvI	CACGTG	1 cut(s)	380
AfaI	GTAC	2 cut(s)	29, 537
AfiI	CCNNNNNNNGG	4 cut(s)	722, 892, 920, 1143
AflII	CTTAAG	1 cut(s)	1153
AgsI	TTSAA	5 cut(s)	216, 289, 337, 1093, 1280
AjnI	CCWGG	5 cut(s)	665, 718, 790, 885, 1159
AjuI	GAANNNNNNNTTGG	4 cut(s)	196, 228, 329, 361
AloI	GAACNNNNNNTCC	1 cut(s)	1347
Alw21I	GWGCWC	2 cut(s)	98, 185
Alw26I	GTCTC	3 cut(s)	686, 690, 1281
AlwI	GGATC	3 cut(s)	292, 537, 986
Ama87I	CYCGRG	2 cut(s)	91, 178
AoxI	GGCC	5 cut(s)	31, 234, 348, 549, 1157
ApeKI	GCWGC	4 cut(s)	481, 776, 830, 1120
ApoI	RAATTY	2 cut(s)	896, 1271
Asp700I	GAANNNNTTC	2 cut(s)	341, 900
AspA2I	CCTAGG	1 cut(s)	919
AspLEI	GCGC	2 cut(s)	9, 1065
AspS9I	GGNCC	7 cut(s)	293, 549, 598, 740, 788, 1182, 1193
AsuC2I	CCSGG	1 cut(s)	228
AsuII	TTCGAA	1 cut(s)	1039
AsuNHI	GCTAGC	1 cut(s)	1123
AvaI	CYCGRG	2 cut(s)	91, 178
AvaII	GGWCC	6 cut(s)	293, 598, 740, 788, 1182, 1193
AvrII	CCTAGG	1 cut(s)	919
BalI	TGGCCA	1 cut(s)	236
BanII	GRGCYC	2 cut(s)	98, 185
BauI	CACGAG	1 cut(s)	1266
BbrPI	CACGTG	1 cut(s)	380
Bbv12I	GWGCWC	2 cut(s)	98, 185
BbvCI	CCTCAGC	1 cut(s)	1116
BbvI	GCAGC	4 cut(s)	468, 763, 842, 1132
BccI	CCATC	5 cut(s)	245, 1046, 1145, 1193, 1277
BceAI	ACGGC	3 cut(s)	46, 234, 1273
BciT130I	CCWGG	5 cut(s)	667, 720, 792, 887, 1161
BclI	TGATCA	2 cut(s)	67, 1011
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	3 cut(s)	686, 690, 1281
BfaI	CTAG	6 cut(s)	755, 876, 920, 974, 1124, 1223
BfmI	CTRYAG	1 cut(s)	780
BfoI	RGCGCY	2 cut(s)	10, 1066
BfrI	CTTAAG	1 cut(s)	1153
BfuAI	ACCTGC	2 cut(s)	370, 560
BglII	AGATCT	1 cut(s)	1165
BisI	GCNGC	6 cut(s)	273, 276, 482, 777, 831, 1121
BlnI	CCTAGG	1 cut(s)	919
BlsI	GCNGC	6 cut(s)	274, 277, 483, 778, 832, 1122
Bme1390I	CCNGG	6 cut(s)	228, 667, 720, 792, 887, 1161
Bme18I	GGWCC	6 cut(s)	293, 598, 740, 788, 1182, 1193
BmeT110I	CYCGRG	2 cut(s)	91, 178
BmgT120I	GGNCC	7 cut(s)	293, 549, 598, 740, 788, 1182, 1193
BmiI	GGNNCC	3 cut(s)	550, 742, 1183
BmrFI	CCNGG	6 cut(s)	228, 667, 720, 792, 887, 1161
BmrI	ACTGGG	2 cut(s)	900, 1188
BmtI	GCTAGC	1 cut(s)	1127
BmuI	ACTGGG	2 cut(s)	900, 1188
BoxI	GACNNNNGTC	1 cut(s)	667
BplI	GAGNNNNNCTC	2 cut(s)	1049, 1081
BpmI	CTGGAG	2 cut(s)	702, 1182
Bpu10I	CCTNAGC	2 cut(s)	1116, 1197
Bpu14I	TTCGAA	1 cut(s)	1039
BpuEI	CTTGAG	1 cut(s)	710
BpuMI	CCSGG	1 cut(s)	228
BsaAI	YACGTR	2 cut(s)	380, 535
BsaBI	GATNNNNATC	1 cut(s)	638
BsaJI	CCNNGG	3 cut(s)	351, 665, 919
BsaWI	WCCGGW	1 cut(s)	811
BsaXI	ACNNNNNCTCC	4 cut(s)	72, 102, 1278, 1308
Bsc4I	CCNNNNNNNGG	4 cut(s)	722, 892, 920, 1143
Bse118I	RCCGGY	2 cut(s)	208, 278
Bse1I	ACTGG	3 cut(s)	906, 1183, 1309
Bse3DI	GCAATG	2 cut(s)	419, 1109
Bse8I	GATNNNNATC	1 cut(s)	638
BseBI	CCWGG	5 cut(s)	667, 720, 792, 887, 1161
BseDI	CCNNGG	3 cut(s)	351, 665, 919
BseGI	GGATG	2 cut(s)	72, 823
BseJI	GATNNNNATC	1 cut(s)	638
BseLI	CCNNNNNNNGG	4 cut(s)	722, 892, 920, 1143
BseMI	GCAATG	2 cut(s)	419, 1109
BseMII	CTCAG	4 cut(s)	316, 402, 1130, 1188
BseNI	ACTGG	3 cut(s)	906, 1183, 1309
BseXI	GCAGC	4 cut(s)	468, 763, 842, 1132
Bsh1285I	CGRYCG	1 cut(s)	227
BshFI	GGCC	5 cut(s)	33, 236, 350, 551, 1159
BsiEI	CGRYCG	1 cut(s)	227
BsiHKAI	GWGCWC	2 cut(s)	98, 185
BsiHKCI	CYCGRG	2 cut(s)	91, 178
BsiSI	CCGG	5 cut(s)	144, 209, 227, 279, 812
BslFI	GGGAC	4 cut(s)	369, 515, 726, 1195
BslI	CCNNNNNNNGG	4 cut(s)	722, 892, 920, 1143
BsmAI	GTCTC	3 cut(s)	686, 690, 1281
BsmBI	CGTCTC	1 cut(s)	1281
BsmFI	GGGAC	4 cut(s)	369, 515, 726, 1195
BsnI	GGCC	5 cut(s)	33, 236, 350, 551, 1159
BsoBI	CYCGRG	2 cut(s)	91, 178
Bsp119I	TTCGAA	1 cut(s)	1039
Bsp1286I	GDGCHC	2 cut(s)	98, 185
Bsp143I	GATC	7 cut(s)	67, 297, 529, 835, 991, 1011, 1165
BspACI	CCGC	4 cut(s)	273, 276, 546, 744
BspANI	GGCC	5 cut(s)	33, 236, 350, 551, 1159
BspCNI	CTCAG	4 cut(s)	315, 403, 1129, 1189
BspLI	GGNNCC	3 cut(s)	550, 742, 1183
BspMI	ACCTGC	2 cut(s)	370, 560
BspOI	GCTAGC	1 cut(s)	1127
BspPI	GGATC	3 cut(s)	292, 537, 986
BspT104I	TTCGAA	1 cut(s)	1039
BspTI	CTTAAG	1 cut(s)	1153
BsrDI	GCAATG	2 cut(s)	419, 1109
BsrFI	RCCGGY	2 cut(s)	208, 278
BsrI	ACTGG	3 cut(s)	906, 1183, 1309
BssAI	RCCGGY	2 cut(s)	208, 278
BssECI	CCNNGG	3 cut(s)	351, 665, 919
BssMI	GATC	7 cut(s)	67, 297, 529, 835, 991, 1011, 1165
BssSI	CACGAG	1 cut(s)	1266
BssT1I	CCWWGG	2 cut(s)	351, 919
Bst2BI	CACGAG	1 cut(s)	1266
Bst2UI	CCWGG	5 cut(s)	667, 720, 792, 887, 1161
Bst4CI	ACNGT	1 cut(s)	293
BstAFI	CTTAAG	1 cut(s)	1153
BstBAI	YACGTR	2 cut(s)	380, 535
BstBI	TTCGAA	1 cut(s)	1039
BstC8I	GCNNGC	2 cut(s)	1125, 1220
BstDEI	CTNAG	4 cut(s)	302, 411, 1116, 1197
BstENI	CCTNNNNNAGG	1 cut(s)	918
BstF5I	GGATG	2 cut(s)	72, 823
BstH2I	RGCGCY	2 cut(s)	10, 1066
BstHHI	GCGC	2 cut(s)	9, 1065
BstKTI	GATC	7 cut(s)	70, 300, 532, 838, 994, 1014, 1168
BstMAI	GTCTC	3 cut(s)	686, 690, 1281
BstMBI	GATC	7 cut(s)	67, 297, 529, 835, 991, 1011, 1165
BstMCI	CGRYCG	1 cut(s)	227
BstMWI	GCNNNNNNNGC	6 cut(s)	15, 218, 272, 421, 575, 1120
BstNI	CCWGG	5 cut(s)	667, 720, 792, 887, 1161
BstPAI	GACNNNNGTC	1 cut(s)	667
BstSCI	CCNGG	6 cut(s)	226, 665, 718, 790, 885, 1159
BstSFI	CTRYAG	1 cut(s)	780
BstV1I	GCAGC	4 cut(s)	468, 763, 842, 1132
BstX2I	RGATCY	1 cut(s)	1165
BstXI	CCANNNNNNTGG	1 cut(s)	591
BstYI	RGATCY	1 cut(s)	1165
BsuRI	GGCC	5 cut(s)	33, 236, 350, 551, 1159
BtsCI	GGATG	2 cut(s)	72, 823
BtsIMutI	CAGTG	3 cut(s)	584, 913, 1195
BveI	ACCTGC	2 cut(s)	370, 560
Cac8I	GCNNGC	2 cut(s)	1125, 1220
CfoI	GCGC	2 cut(s)	9, 1065
Cfr10I	RCCGGY	2 cut(s)	208, 278
Cfr13I	GGNCC	7 cut(s)	293, 549, 598, 740, 788, 1182, 1193
CpoI	CGGWCCG	1 cut(s)	293
Csp6I	GTAC	2 cut(s)	28, 536
CspCI	CAANNNNNGTGG	2 cut(s)	1085, 1120
CspI	CGGWCCG	1 cut(s)	293
CviAII	CATG	3 cut(s)	110, 617, 1233
CviQI	GTAC	2 cut(s)	28, 536
DdeI	CTNAG	4 cut(s)	302, 411, 1116, 1197
DpnI	GATC	7 cut(s)	69, 299, 531, 837, 993, 1013, 1167
DpnII	GATC	7 cut(s)	67, 297, 529, 835, 991, 1011, 1165
DraI	TTTAAA	1 cut(s)	441
EaeI	YGGCCR	1 cut(s)	234
Ecl136II	GAGCTC	2 cut(s)	96, 183
Eco130I	CCWWGG	2 cut(s)	351, 919
Eco147I	AGGCCT	1 cut(s)	1159
Eco24I	GRGCYC	2 cut(s)	98, 185
Eco32I	GATATC	2 cut(s)	883, 945
Eco47I	GGWCC	6 cut(s)	293, 598, 740, 788, 1182, 1193
Eco53kI	GAGCTC	2 cut(s)	96, 183
Eco57I	CTGAAG	1 cut(s)	374
Eco72I	CACGTG	1 cut(s)	380
Eco88I	CYCGRG	2 cut(s)	91, 178
EcoICRI	GAGCTC	2 cut(s)	96, 183
EcoNI	CCTNNNNNAGG	1 cut(s)	918
EcoRII	CCWGG	5 cut(s)	665, 718, 790, 885, 1159
EcoRV	GATATC	2 cut(s)	883, 945
EcoT14I	CCWWGG	2 cut(s)	351, 919
EcoT38I	GRGCYC	2 cut(s)	98, 185
ErhI	CCWWGG	2 cut(s)	351, 919
Esp3I	CGTCTC	1 cut(s)	1281
FaeI	CATG	3 cut(s)	113, 620, 1236
FaiI	YATR	8 cut(s)	111, 197, 249, 564, 613, 618, 733, 1234
FaqI	GGGAC	4 cut(s)	369, 515, 726, 1195
FatI	CATG	3 cut(s)	109, 616, 1232
FauI	CCCGC	2 cut(s)	539, 751
FbaI	TGATCA	2 cut(s)	67, 1011
FblI	GTMKAC	2 cut(s)	121, 174
Fnu4HI	GCNGC	6 cut(s)	273, 276, 482, 777, 831, 1121
FokI	GGATG	2 cut(s)	59, 830
FriOI	GRGCYC	2 cut(s)	98, 185
Fsp4HI	GCNGC	6 cut(s)	273, 276, 482, 777, 831, 1121
FspBI	CTAG	6 cut(s)	755, 876, 920, 974, 1124, 1223
GlaI	GCGC	2 cut(s)	8, 1064
GluI	GCNGC	6 cut(s)	273, 276, 482, 777, 831, 1121
GsuI	CTGGAG	2 cut(s)	702, 1182
HaeII	RGCGCY	2 cut(s)	10, 1066
HaeIII	GGCC	5 cut(s)	33, 236, 350, 551, 1159
HapII	CCGG	5 cut(s)	144, 209, 227, 279, 812
HhaI	GCGC	2 cut(s)	9, 1065
Hin1II	CATG	3 cut(s)	113, 620, 1236
Hin6I	GCGC	2 cut(s)	7, 1063
HinP1I	GCGC	2 cut(s)	7, 1063
HincII	GTYRAC	2 cut(s)	122, 175
HindII	GTYRAC	2 cut(s)	122, 175
HindIII	AAGCTT	1 cut(s)	1216
HinfI	GANTC	3 cut(s)	449, 808, 1205
HpaII	CCGG	5 cut(s)	144, 209, 227, 279, 812
Hpy166II	GTNNAC	4 cut(s)	122, 175, 538, 1193
Hpy188I	TCNGA	8 cut(s)	15, 50, 129, 297, 305, 313, 393, 677
Hpy188III	TCNNGA	9 cut(s)	91, 645, 689, 856, 974, 1268, 1277, 1342, 1353
Hpy8I	GTNNAC	4 cut(s)	122, 175, 538, 1193
Hpy99I	CGWCG	2 cut(s)	123, 634
HpyAV	CCTTC	3 cut(s)	55, 172, 364
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	3 cut(s)	379, 534, 703
HpyCH4V	TGCA	3 cut(s)	611, 1032, 1149
HpyF10VI	GCNNNNNNNGC	6 cut(s)	15, 218, 272, 421, 575, 1120
HpyF3I	CTNAG	4 cut(s)	302, 411, 1116, 1197
HpySE526I	ACGT	3 cut(s)	379, 534, 703
Hsp92II	CATG	3 cut(s)	113, 620, 1236
HspAI	GCGC	2 cut(s)	7, 1063
Ksp22I	TGATCA	2 cut(s)	67, 1011
Kzo9I	GATC	7 cut(s)	67, 297, 529, 835, 991, 1011, 1165
Lsp1109I	GCAGC	4 cut(s)	468, 763, 842, 1132
MaeI	CTAG	6 cut(s)	755, 876, 920, 974, 1124, 1223
MaeII	ACGT	3 cut(s)	379, 534, 703
MaeIII	GTNAC	4 cut(s)	425, 958, 1075, 1261
MalI	GATC	7 cut(s)	69, 299, 531, 837, 993, 1013, 1167
MboI	GATC	7 cut(s)	67, 297, 529, 835, 991, 1011, 1165
MboII	GAAGA	1 cut(s)	1292
MfeI	CAATTG	1 cut(s)	606
MflI	RGATCY	1 cut(s)	1165
MhlI	GDGCHC	2 cut(s)	98, 185
MlsI	TGGCCA	1 cut(s)	236
MluCI	AATT	9 cut(s)	331, 579, 606, 800, 896, 1041, 1087, 1101, 1271
MluNI	TGGCCA	1 cut(s)	236
MmeI	TCCRAC	3 cut(s)	234, 336, 576
Mox20I	TGGCCA	1 cut(s)	236
MroXI	GAANNNNTTC	2 cut(s)	341, 900
MscI	TGGCCA	1 cut(s)	236
MseI	TTAA	7 cut(s)	440, 768, 1026, 1044, 1100, 1154, 1253
MslI	CAYNNNNRTG	1 cut(s)	589
Msp20I	TGGCCA	1 cut(s)	236
MspCI	CTTAAG	1 cut(s)	1153
MspI	CCGG	5 cut(s)	144, 209, 227, 279, 812
MspR9I	CCNGG	6 cut(s)	228, 667, 720, 792, 887, 1161
MunI	CAATTG	1 cut(s)	606
MvaI	CCWGG	5 cut(s)	667, 720, 792, 887, 1161
MwoI	GCNNNNNNNGC	6 cut(s)	15, 218, 272, 421, 575, 1120
NciI	CCSGG	1 cut(s)	228
NdeII	GATC	7 cut(s)	67, 297, 529, 835, 991, 1011, 1165
NheI	GCTAGC	1 cut(s)	1123
NlaIII	CATG	3 cut(s)	113, 620, 1236
NlaIV	GGNNCC	3 cut(s)	550, 742, 1183
NmuCI	GTSAC	3 cut(s)	425, 958, 1075
NspV	TTCGAA	1 cut(s)	1039
PceI	AGGCCT	1 cut(s)	1159
PcsI	WCGNNNNNNNCGW	1 cut(s)	46
PdmI	GAANNNNTTC	2 cut(s)	341, 900
PfeI	GAWTC	3 cut(s)	449, 808, 1205
PflFI	GACNNNGTC	1 cut(s)	1292
PfoI	TCCNGGA	1 cut(s)	790
PkrI	GCNGC	6 cut(s)	274, 277, 483, 778, 832, 1122
PmaCI	CACGTG	1 cut(s)	380
PmlI	CACGTG	1 cut(s)	380
Ppu21I	YACGTR	2 cut(s)	380, 535
PshAI	GACNNNNGTC	1 cut(s)	667
PsiI	TTATAA	1 cut(s)	564
Psp124BI	GAGCTC	2 cut(s)	98, 185
Psp6I	CCWGG	5 cut(s)	665, 718, 790, 885, 1159
PspCI	CACGTG	1 cut(s)	380
PspGI	CCWGG	5 cut(s)	665, 718, 790, 885, 1159
PspN4I	GGNNCC	3 cut(s)	550, 742, 1183
PspPI	GGNCC	7 cut(s)	293, 549, 598, 740, 788, 1182, 1193
PsrI	GAACNNNNNNTAC	2 cut(s)	640, 672
PsuI	RGATCY	1 cut(s)	1165
PsyI	GACNNNGTC	1 cut(s)	1292
RsaI	GTAC	2 cut(s)	29, 537
RsaNI	GTAC	2 cut(s)	28, 536
RseI	CAYNNNNRTG	1 cut(s)	589
Rsr2I	CGGWCCG	1 cut(s)	293
RsrII	CGGWCCG	1 cut(s)	293
SacI	GAGCTC	2 cut(s)	98, 185
SalI	GTCGAC	2 cut(s)	120, 173
SaqAI	TTAA	7 cut(s)	440, 768, 1026, 1044, 1100, 1154, 1253
SatI	GCNGC	6 cut(s)	273, 276, 482, 777, 831, 1121
Sau3AI	GATC	7 cut(s)	67, 297, 529, 835, 991, 1011, 1165
Sau96I	GGNCC	7 cut(s)	293, 549, 598, 740, 788, 1182, 1193
ScrFI	CCNGG	6 cut(s)	228, 667, 720, 792, 887, 1161
SduI	GDGCHC	2 cut(s)	98, 185
SfcI	CTRYAG	1 cut(s)	780
SfuI	TTCGAA	1 cut(s)	1039
SinI	GGWCC	6 cut(s)	293, 598, 740, 788, 1182, 1193
SmiMI	CAYNNNNRTG	1 cut(s)	589
SmlI	CTYRAG	2 cut(s)	689, 1153
SmoI	CTYRAG	2 cut(s)	689, 1153
Sse9I	AATT	9 cut(s)	331, 579, 606, 800, 896, 1041, 1087, 1101, 1271
SseBI	AGGCCT	1 cut(s)	1159
SsiI	CCGC	4 cut(s)	273, 276, 546, 744
SspMI	CTAG	6 cut(s)	755, 876, 920, 974, 1124, 1223
SstI	GAGCTC	2 cut(s)	98, 185
StuI	AGGCCT	1 cut(s)	1159
StyD4I	CCNGG	6 cut(s)	226, 665, 718, 790, 885, 1159
StyI	CCWWGG	2 cut(s)	351, 919
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	3 cut(s)	382, 537, 706
TaqI	TCGA	8 cut(s)	121, 168, 174, 223, 632, 661, 966, 1039
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	9 cut(s)	331, 579, 606, 800, 896, 1041, 1087, 1101, 1271
TauI	GCSGC	2 cut(s)	275, 278
TfiI	GAWTC	3 cut(s)	449, 808, 1205
Tru1I	TTAA	7 cut(s)	440, 768, 1026, 1044, 1100, 1154, 1253
Tru9I	TTAA	7 cut(s)	440, 768, 1026, 1044, 1100, 1154, 1253
TscAI	CASTG	3 cut(s)	591, 913, 1195
TseFI	GTSAC	3 cut(s)	425, 958, 1075
TseI	GCWGC	4 cut(s)	481, 776, 830, 1120
Tsp45I	GTSAC	3 cut(s)	425, 958, 1075
TspDTI	ATGAA	6 cut(s)	17, 154, 393, 510, 813, 875
TspGWI	ACGGA	3 cut(s)	127, 450, 1227
TspRI	CASTG	3 cut(s)	591, 913, 1195
Tth111I	GACNNNGTC	1 cut(s)	1292
Vha464I	CTTAAG	1 cut(s)	1153
VpaK11BI	GGWCC	6 cut(s)	293, 598, 740, 788, 1182, 1193
XagI	CCTNNNNNAGG	1 cut(s)	918
XapI	RAATTY	2 cut(s)	896, 1271
XbaI	TCTAGA	1 cut(s)	973
XmaJI	CCTAGG	1 cut(s)	919
XmiI	GTMKAC	2 cut(s)	121, 174
XmnI	GAANNNNTTC	2 cut(s)	341, 900
XspI	CTAG	6 cut(s)	755, 876, 920, 974, 1124, 1223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.